[Go-diff] GO update 08/06/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Wed Aug 6 21:30:46 PDT 2008 

OBODIFF of gene_ontology_write.obo version 1.151 by 1.154

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010643
* Created object of type obo:TERM with id GO:0010644
* Created object of type obo:TERM with id GO:0010645
* Created object of type obo:TERM with id GO:0010646
* Created object of type obo:TERM with id GO:0010647
* Created object of type obo:TERM with id GO:0010648
* Created object of type obo:TERM with id GO:0010649
* Created object of type obo:TERM with id GO:0010650
* Created object of type obo:TERM with id GO:0010651
* Created object of type obo:TERM with id GO:0010652
* Created object of type obo:TERM with id GO:0010653
* Created object of type obo:TERM with id GO:0080006
* Populated new object GO:0010643 (macro)
  * Changed name of GO:0010643 from "<new term>" to "cell communication by chemical coupling"
  * Set definition of GO:0010643 to "The process that mediates signaling interactions between one cell and another cell by the transfer of small, water-soluble molecules or metabolites between their adjacent cytoplasms via intercellular protein channels."
  * Added definition dbxref GOC:dph to GO:0010643
  * Added definition dbxref GOC:kva to GO:0010643
  * Added definition dbxref GOC:tb to GO:0010643
  * Copied GO:0010643 to GO:0007154 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010643
* Populated new object GO:0010644 (macro)
  * Changed name of GO:0010644 from "<new term>" to "cell communication by electrical coupling"
  * Set definition of GO:0010644 to "The process that mediates signaling interactions between one cell and another cell by transfer of current between their adjacent cytoplasms via intercellular protein channels."
  * Added definition dbxref GOC:dph to GO:0010644
  * Added definition dbxref GOC:kva to GO:0010644
  * Added definition dbxref GOC:tb to GO:0010644
  * Copied GO:0010644 to GO:0007154 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010644
* Populated new object GO:0010645 (macro)
  * Changed name of GO:0010645 from "<new term>" to "regulation of cell communication by chemical coupling"
  * Set definition of GO:0010645 to "Any process that modulates the frequency, rate or extent of cell communication via chemical coupling. Cell communication by chemical coupling is the process that mediates signaling interactions between one cell and another cell by the transfer of small, water-soluble molecules or metabolites between their adjacent cytoplasms via intercellular protein channels."
  * Added definition dbxref GOC:dph to GO:0010645
  * Added definition dbxref GOC:kva to GO:0010645
  * Added definition dbxref GOC:tb to GO:0010645
  * Copied GO:0010645 to GO:0010646 with type OBO_REL:is_a
  * Copied GO:0010645 to GO:0010643 with type regulates
  * Assigned namespace "biological_process" to GO:0010645
* Populated new object GO:0010646 (macro)
  * Changed name of GO:0010646 from "<new term>" to "regulation of cell communication"
  * Set definition of GO:0010646 to "Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment."
  * Added definition dbxref GOC:dph to GO:0010646
  * Added definition dbxref GOC:tb to GO:0010646
  * Copied GO:0010646 to GO:0050794 with type OBO_REL:is_a
  * Copied GO:0010646 to GO:0007154 with type regulates
  * Assigned namespace "biological_process" to GO:0010646
* Populated new object GO:0010647 (macro)
  * Changed name of GO:0010647 from "<new term>" to "positive regulation of cell communication"
  * Set definition of GO:0010647 to "Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment."
  * Added definition dbxref GOC:dph to GO:0010647
  * Added definition dbxref GOC:tb to GO:0010647
  * Copied GO:0010647 to GO:0048522 with type OBO_REL:is_a
  * Copied GO:0010647 to GO:0010646 with type OBO_REL:is_a
  * Copied GO:0010647 to GO:0007154 with type positively_regulates
  * Assigned namespace "biological_process" to GO:0010647
* Populated new object GO:0010648 (macro)
  * Changed name of GO:0010648 from "<new term>" to "negative regulation of cell communication"
  * Set definition of GO:0010648 to "Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment."
  * Added definition dbxref GOC:dph to GO:0010648
  * Added definition dbxref GOC:tb to GO:0010648
  * Copied GO:0010648 to GO:0048523 with type OBO_REL:is_a
  * Copied GO:0010648 to GO:0007154 with type negatively_regulates
  * Copied GO:0010648 to GO:0010646 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010648
* Populated new object GO:0010649 (macro)
  * Changed name of GO:0010649 from "<new term>" to "regulation of cell communication by electrical coupling"
  * Set definition of GO:0010649 to "Any process that modulates the frequency, rate or extent of cell communication via electrical coupling. Cell communication via electrical coupling is the process that mediates signaling interactions between one cell and another cell by transfer of current between their adjacent cytoplasms via intercellular protein channels."
  * Added definition dbxref GOC:dph to GO:0010649
  * Added definition dbxref GOC:kva to GO:0010649
  * Added definition dbxref GOC:tb to GO:0010649
  * Copied GO:0010649 to GO:0010646 with type OBO_REL:is_a
  * Copied GO:0010649 to GO:0010644 with type regulates
  * Assigned namespace "biological_process" to GO:0010649
* Populated new object GO:0010650 (macro)
  * Changed name of GO:0010650 from "<new term>" to "positive regulation of cell communication by electrical coupling"
  * Set definition of GO:0010650 to "Any process that increases the frequency, rate or extent of cell communication via electrical coupling. Cell communication via electrical coupling is the process that mediates signaling interactions between one cell and another cell by transfer of current between their adjacent cytoplasms via intercellular protein channels."
  * Added definition dbxref GOC:dph to GO:0010650
  * Added definition dbxref GOC:kva to GO:0010650
  * Added definition dbxref GOC:tb to GO:0010650
  * Copied GO:0010650 to GO:0010649 with type OBO_REL:is_a
  * Copied GO:0010650 to GO:0010644 with type positively_regulates
  * Copied GO:0010650 to GO:0010647 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010650
* Populated new object GO:0010651 (macro)
  * Changed name of GO:0010651 from "<new term>" to "negative regulation of cell communication by electrical coupling"
  * Set definition of GO:0010651 to "Any process that decreases the frequency, rate or extent of cell communication via electrical coupling. Cell communication via electrical coupling is the process that mediates signaling interactions between one cell and another cell by transfer of current between their adjacent cytoplasms via intercellular protein channels."
  * Added definition dbxref GOC:dph to GO:0010651
  * Added definition dbxref GOC:kva to GO:0010651
  * Added definition dbxref GOC:tb to GO:0010651
  * Copied GO:0010651 to GO:0010649 with type OBO_REL:is_a
  * Copied GO:0010651 to GO:0010648 with type OBO_REL:is_a
  * Copied GO:0010651 to GO:0010644 with type negatively_regulates
  * Assigned namespace "biological_process" to GO:0010651
* Populated new object GO:0010652 (macro)
  * Changed name of GO:0010652 from "<new term>" to "positive regulation of cell communication by chemical coupling"
  * Set definition of GO:0010652 to "Any process that increases the frequency, rate or extent of cell communication via chemical coupling. Cell communication by chemical coupling is the process that mediates signaling interactions between one cell and another cell by the transfer of small, water-soluble molecules or metabolites between their adjacent cytoplasms via intercellular protein channels."
  * Added definition dbxref GOC:dph to GO:0010652
  * Added definition dbxref GOC:kva to GO:0010652
  * Added definition dbxref GOC:tb to GO:0010652
  * Copied GO:0010652 to GO:0010643 with type negatively_regulates
  * Copied GO:0010652 to GO:0010645 with type OBO_REL:is_a
  * Copied GO:0010652 to GO:0010647 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010652
* Populated new object GO:0010653 (macro)
  * Changed name of GO:0010653 from "<new term>" to "negative regulation of cell communication by chemical coupling"
  * Set definition of GO:0010653 to "Any process that decreases the frequency, rate or extent of cell communication via chemical coupling. Cell communication by chemical coupling is the process that mediates signaling interactions between one cell and another cell by the transfer of small, water-soluble molecules or metabolites between their adjacent cytoplasms via intercellular protein channels."
  * Added definition dbxref GOC:dph to GO:0010653
  * Added definition dbxref GOC:kva to GO:0010653
  * Added definition dbxref GOC:tb to GO:0010653
  * Copied GO:0010653 to GO:0010648 with type OBO_REL:is_a
  * Copied GO:0010653 to GO:0010643 with type negatively_regulates
  * Copied GO:0010653 to GO:0010645 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010653
* Populated new object GO:0080006 (macro)
  * Changed name of GO:0080006 from "<new term>" to "internode patterning"
  * Set definition of GO:0080006 to "Determines the spacing between two shoot nodes. A shoot node is the region of the shoot where the spikelet, flower, floret, branch, bud and/or leaves are attached."
  * Added definition dbxref GOC:tb to GO:0080006
  * Copied GO:0080006 to GO:0048367 with type part_of
  * Copied GO:0080006 to GO:0007389 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0080006
* Changed name of GO:0000045 from "autophagic vacuole formation" to "autophagosome formation"
* Deleted synonym "autophagosome formation" from GO:0000045
* Added synonym "autophagic vacuole formation" to GO:0000045
* Changed synonym scope of GO:0000045 from "Related" to "Exact"
* Added synonym "phagophore assembly site" to GO:0000407
* Deleted GO:0005607 --part_of--> GO:0016011
* Deleted GO:0006914 --OBO_REL:is_a--> GO:0009987
* Copied GO:0006914 to GO:0044248 with type OBO_REL:is_a
* Changed name of GO:0019776 from "APG8 ligase activity" to "Atg8 ligase activity"
* Changed definition of GO:0019776 from "Catalysis of the covalent attachment of the ubiquitin-like protein APG8 to substrate molecules; phosphatidylethanolamine is a known substrate." to "Catalysis of the covalent attachment of the ubiquitin-like protein Atg8 to substrate molecules; phosphatidylethanolamine is a known substrate."
* Added synonym "APG8 ligase activity" to GO:0019776
* Changed synonym scope of GO:0019776 from "Related" to "Exact"
* Added synonym "Atg8 conjugating enzyme activity" to GO:0019776
* Changed synonym scope of GO:0019776 from "Related" to "Exact"
* Changed name of GO:0019777 from "APG12 ligase activity" to "Atg12 ligase activity"
* Changed definition of GO:0019777 from "Catalysis of the covalent attachment of the ubiquitin-like protein APG12 to other proteins." to "Catalysis of the covalent attachment of the ubiquitin-like protein Atg12 to other proteins."
* Added synonym "APG12 ligase activity" to GO:0019777
* Changed synonym scope of GO:0019777 from "Related" to "Exact"
* Added synonym "Atg12 conjugating enzyme activity" to GO:0019777
* Deleted GO:0046536 --OBO_REL:is_a--> GO:0044421

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