[Go-diff] GO update 08/08/2008
Remote CVS for Gene Ontology
gocvs at genome.stanford.edu
Fri Aug 8 21:30:46 PDT 2008
OBODIFF of gene_ontology_write.obo version 1.154 by 1.158
Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010654
* Created object of type obo:TERM with id GO:0010655
* Created object of type obo:TERM with id GO:0010656
* Created object of type obo:TERM with id GO:0010657
* Created object of type obo:TERM with id GO:0010658
* Created object of type obo:TERM with id GO:0010659
* Created object of type obo:TERM with id GO:0010660
* Created object of type obo:TERM with id GO:0010661
* Created object of type obo:TERM with id GO:0010662
* Created object of type obo:TERM with id GO:0010663
* Created object of type obo:TERM with id GO:0010664
* Created object of type obo:TERM with id GO:0010665
* Created object of type obo:TERM with id GO:0010666
* Created object of type obo:TERM with id GO:0010667
* Created object of type obo:TERM with id GO:0034639
* Created object of type obo:TERM with id GO:0034640
* Created object of type obo:TERM with id GO:0034642
* Created object of type obo:TERM with id GO:0034643
* Created object of type obo:TERM with id GO:0060274
* Created object of type obo:TERM with id GO:0060275
* Created object of type obo:TERM with id GO:0060276
* Populated new object GO:0010654 (macro)
* Changed name of GO:0010654 from "<new term>" to "apical cell fate commitment"
* Set definition of GO:0010654 to "The process whereby the developmental fate of a cell becomes restricted such that it will develop into an apical cell. The apical cell is the upper cell formed after the first division of the zygote."
* Added definition dbxref GOC:dph to GO:0010654
* Added definition dbxref GOC:tb to GO:0010654
* Copied GO:0010654 to GO:0045165 with type OBO_REL:is_a
* Copied GO:0010654 to GO:0009793 with type part_of
* Assigned namespace "biological_process" to GO:0010654
* Populated new object GO:0010655 (macro)
* Changed name of GO:0010655 from "<new term>" to "thrombin receptor activity, G-protein coupled"
* Set definition of GO:0010655 to "Combining with thrombin to initiate a G-protein mediated change in cell activity. A G-protein is a signal transduction molecule that alternates between an inactive GDP-bound and an active GTP-bound state."
* Added definition dbxref GOC:dph to GO:0010655
* Added definition dbxref GOC:tb to GO:0010655
* Copied GO:0010655 to GO:0015057 with type OBO_REL:is_a
* Copied GO:0010655 to GO:0008528 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0010655
* Populated new object GO:0010656 (macro)
* Changed name of GO:0010656 from "<new term>" to "negative regulation of muscle cell apoptosis"
* Set definition of GO:0010656 to "Any process that decreases the rate or frequency of muscle cell apoptosis. Muscle cell apoptosis is a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a muscle cell and result in its death."
* Added definition dbxref GOC:dph to GO:0010656
* Added definition dbxref GOC:tb to GO:0010656
* Copied GO:0010656 to GO:0010657 with type negatively_regulates
* Copied GO:0010656 to GO:0010660 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0010656
* Populated new object GO:0010657 (macro)
* Changed name of GO:0010657 from "<new term>" to "muscle cell apoptosis"
* Set definition of GO:0010657 to "A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a muscle cell and result in its death. A muscle cell is a mature contractile cell, commonly known as a myocyte, that forms one of three kinds of muscle."
* Added definition dbxref GOC:dph to GO:0010657
* Added definition dbxref GOC:tb to GO:0010657
* Copied GO:0010657 to GO:0006915 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0010657
* Populated new object GO:0010658 (macro)
* Changed name of GO:0010658 from "<new term>" to "striated muscle cell apoptosis"
* Set definition of GO:0010658 to "A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a striated muscle cell and result in its death. Striated muscle cells make up striated muscle fibers which are divided by transverse bands into striations."
* Added definition dbxref GOC:dph to GO:0010658
* Added definition dbxref GOC:tb to GO:0010658
* Copied GO:0010658 to GO:0010657 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0010658
* Populated new object GO:0010659 (macro)
* Changed name of GO:0010659 from "<new term>" to "cardiac muscle cell apoptosis"
* Set definition of GO:0010659 to "A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a cardiac muscle cell and result in its death. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction."
* Added definition dbxref GOC:dph to GO:0010659
* Added definition dbxref GOC:tb to GO:0010659
* Copied GO:0010659 to GO:0010658 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0010659
* Populated new object GO:0010660 (macro)
* Changed name of GO:0010660 from "<new term>" to "regulation of muscle cell apoptosis"
* Set definition of GO:0010660 to "Any process that modulates the rate or frequency of muscle cell apoptosis. Muscle cell apoptosis is a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a muscle cell and result in its death."
* Added definition dbxref GOC:dph to GO:0010660
* Added definition dbxref GOC:tb to GO:0010660
* Copied GO:0010660 to GO:0042981 with type OBO_REL:is_a
* Copied GO:0010660 to GO:0010657 with type regulates
* Assigned namespace "biological_process" to GO:0010660
* Populated new object GO:0010661 (macro)
* Changed name of GO:0010661 from "<new term>" to "positive regulation of muscle cell apoptosis"
* Set definition of GO:0010661 to "Any process that increases the rate or frequency of muscle cell apoptosis. Muscle cell apoptosis is a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a muscle cell and result in its death."
* Added definition dbxref GOC:dph to GO:0010661
* Added definition dbxref GOC:tb to GO:0010661
* Copied GO:0010661 to GO:0010660 with type OBO_REL:is_a
* Copied GO:0010661 to GO:0010657 with type positively_regulates
* Assigned namespace "biological_process" to GO:0010661
* Populated new object GO:0010662 (macro)
* Changed name of GO:0010662 from "<new term>" to "regulation of striated muscle cell apoptosis"
* Set definition of GO:0010662 to "Any process that modulates the rate or extent of striated muscle cell apoptosis. Striated muscle cell apoptosis is a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a striated muscle cell and result in its death."
* Added definition dbxref GOC:dph to GO:0010662
* Added definition dbxref GOC:tb to GO:0010662
* Copied GO:0010662 to GO:0010658 with type regulates
* Copied GO:0010662 to GO:0010660 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0010662
* Populated new object GO:0010663 (macro)
* Changed name of GO:0010663 from "<new term>" to "positive regulation of striated muscle cell apoptosis"
* Set definition of GO:0010663 to "Any process that increases the rate or extent of striated muscle cell apoptosis. Striated muscle cell apoptosis is a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a striated muscle cell and result in its death."
* Added definition dbxref GOC:dph to GO:0010663
* Added definition dbxref GOC:tb to GO:0010663
* Copied GO:0010663 to GO:0010658 with type positively_regulates
* Copied GO:0010663 to GO:0010662 with type OBO_REL:is_a
* Copied GO:0010663 to GO:0010661 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0010663
* Populated new object GO:0010664 (macro)
* Changed name of GO:0010664 from "<new term>" to "negative regulation of striated muscle cell apoptosis"
* Set definition of GO:0010664 to "Any process that increases the rate or extent of striated muscle cell apoptosis. Striated muscle cell apoptosis is a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a striated muscle cell and result in its death."
* Added definition dbxref GOC:dph to GO:0010664
* Added definition dbxref GOC:rl to GO:0010664
* Added definition dbxref GOC:tb to GO:0010664
* Added synonym "down regulation of striated muscle cell apoptosis " to GO:0010664
* Added general dbxref GOC:tb to synonym down regulation of striated muscle cell apoptosis of GO:0010664
* Added general dbxref GOC:rl to synonym down regulation of striated muscle cell apoptosis of GO:0010664
* Added general dbxref GOC:dph to synonym down regulation of striated muscle cell apoptosis of GO:0010664
* Changed synonym scope of GO:0010664 from "Related" to "Exact"
* Added synonym "down-regulation of striated muscle cell apoptosis" to GO:0010664
* Added general dbxref GOC:tb to synonym down-regulation of striated muscle cell apoptosis of GO:0010664
* Added general dbxref GOC:rl to synonym down-regulation of striated muscle cell apoptosis of GO:0010664
* Added general dbxref GOC:dph to synonym down-regulation of striated muscle cell apoptosis of GO:0010664
* Changed synonym scope of GO:0010664 from "Related" to "Exact"
* Added synonym "downregulation of striated muscle cell apoptosis" to GO:0010664
* Added general dbxref GOC:tb to synonym downregulation of striated muscle cell apoptosis of GO:0010664
* Added general dbxref GOC:rl to synonym downregulation of striated muscle cell apoptosis of GO:0010664
* Added general dbxref GOC:dph to synonym downregulation of striated muscle cell apoptosis of GO:0010664
* Changed synonym scope of GO:0010664 from "Related" to "Exact"
* Added synonym "inhibition of striated muscle cell apoptosis " to GO:0010664
* Added general dbxref GOC:tb to synonym inhibition of striated muscle cell apoptosis of GO:0010664
* Added general dbxref GOC:rl to synonym inhibition of striated muscle cell apoptosis of GO:0010664
* Added general dbxref GOC:dph to synonym inhibition of striated muscle cell apoptosis of GO:0010664
* Changed synonym scope of GO:0010664 from "Related" to "Narrow"
* Copied GO:0010664 to GO:0010656 with type OBO_REL:is_a
* Copied GO:0010664 to GO:0010658 with type negatively_regulates
* Copied GO:0010664 to GO:0010662 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0010664
* Populated new object GO:0010665 (macro)
* Changed name of GO:0010665 from "<new term>" to "regulation of cardiac muscle cell apoptosis"
* Set definition of GO:0010665 to "Any process that modulates the rate or extent of cardiac cell apoptosis. Cardiac cell apoptosis is a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a cardiac muscle cell and result in its death."
* Added definition dbxref GOC:dph to GO:0010665
* Added definition dbxref GOC:tb to GO:0010665
* Copied GO:0010665 to GO:0010659 with type regulates
* Copied GO:0010665 to GO:0010662 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0010665
* Populated new object GO:0010666 (macro)
* Changed name of GO:0010666 from "<new term>" to "positive regulation of cardiac muscle cell apoptosis"
* Set definition of GO:0010666 to "Any process that increases the rate or extent of cardiac cell apoptosis. Cardiac cell apoptosis is a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a cardiac muscle cell and result in its death."
* Added definition dbxref GOC:dph to GO:0010666
* Added definition dbxref GOC:tb to GO:0010666
* Copied GO:0010666 to GO:0010659 with type positively_regulates
* Copied GO:0010666 to GO:0010663 with type OBO_REL:is_a
* Copied GO:0010666 to GO:0010665 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0010666
* Populated new object GO:0010667 (macro)
* Changed name of GO:0010667 from "<new term>" to "negative regulation of cardiac muscle cell apoptosis"
* Set definition of GO:0010667 to "Any process that decreases the rate or extent of cardiac cell apoptosis. Cardiac cell apoptosis is a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle a cardiac muscle cell and result in its death."
* Added definition dbxref GOC:dph to GO:0010667
* Added definition dbxref GOC:rl to GO:0010667
* Added definition dbxref GOC:tb to GO:0010667
* Added synonym "down regulation of cardiac muscle cell apoptosis" to GO:0010667
* Added general dbxref GOC:tb to synonym down regulation of cardiac muscle cell apoptosis of GO:0010667
* Added general dbxref GOC:rl to synonym down regulation of cardiac muscle cell apoptosis of GO:0010667
* Added general dbxref GOC:dph to synonym down regulation of cardiac muscle cell apoptosis of GO:0010667
* Changed synonym scope of GO:0010667 from "Related" to "Exact"
* Added synonym "down-regulation of cardiac muscle cell apoptosis" to GO:0010667
* Added general dbxref GOC:tb to synonym down-regulation of cardiac muscle cell apoptosis of GO:0010667
* Added general dbxref GOC:rl to synonym down-regulation of cardiac muscle cell apoptosis of GO:0010667
* Added general dbxref GOC:dph to synonym down-regulation of cardiac muscle cell apoptosis of GO:0010667
* Changed synonym scope of GO:0010667 from "Related" to "Exact"
* Added synonym "downregulation of cardiac muscle cell apoptosis" to GO:0010667
* Added general dbxref GOC:tb to synonym downregulation of cardiac muscle cell apoptosis of GO:0010667
* Added general dbxref GOC:rl to synonym downregulation of cardiac muscle cell apoptosis of GO:0010667
* Added general dbxref GOC:dph to synonym downregulation of cardiac muscle cell apoptosis of GO:0010667
* Changed synonym scope of GO:0010667 from "Related" to "Exact"
* Added synonym "inhibition of cardiac muscle cell apoptosis " to GO:0010667
* Added general dbxref GOC:tb to synonym inhibition of cardiac muscle cell apoptosis of GO:0010667
* Added general dbxref GOC:rl to synonym inhibition of cardiac muscle cell apoptosis of GO:0010667
* Added general dbxref GOC:dph to synonym inhibition of cardiac muscle cell apoptosis of GO:0010667
* Changed synonym scope of GO:0010667 from "Related" to "Narrow"
* Copied GO:0010667 to GO:0010665 with type OBO_REL:is_a
* Copied GO:0010667 to GO:0010664 with type OBO_REL:is_a
* Copied GO:0010667 to GO:0010659 with type negatively_regulates
* Assigned namespace "biological_process" to GO:0010667
* Populated new object GO:0034639 (macro)
* Changed name of GO:0034639 from "<new term>" to "L-amino acid efflux transmembrane transporter activity"
* Set definition of GO:0034639 to "Catalysis of the transfer of an L-amino acid from the inside of the cell to the outside of the cell across a membrane."
* Added definition dbxref GOC:mah to GO:0034639
* Added synonym "L-amino acid efflux permease activity" to GO:0034639
* Changed synonym scope of GO:0034639 from "Related" to "Exact"
* Added synonym "L-amino acid export transporter activity" to GO:0034639
* Changed synonym scope of GO:0034639 from "Related" to "Exact"
* Copied GO:0034639 to GO:0015179 with type OBO_REL:is_a
* Copied GO:0034639 to GO:0015562 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0034639
* Populated new object GO:0034640 (macro)
* Changed name of GO:0034640 from "<new term>" to "mitochondrion localization by microtubule attachment"
* Set definition of GO:0034640 to "The directed movement of a mitochondrion by attachement to a microtubule, followed by elongation of the microtubule by tubulin polymerization."
* Added definition dbxref GOC:mah to GO:0034640
* Added definition dbxref PMID:12972644 to GO:0034640
* Added synonym "mitochondrial localization by microtubule attachment" to GO:0034640
* Changed synonym scope of GO:0034640 from "Related" to "Exact"
* Added synonym "mitochondrial migration by microtubule attachment" to GO:0034640
* Changed synonym scope of GO:0034640 from "Related" to "Exact"
* Added synonym "mitochondrion migration by microtubule attachment" to GO:0034640
* Changed synonym scope of GO:0034640 from "Related" to "Exact"
* Copied GO:0034640 to GO:0034643 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034640
* Populated new object GO:0034642 (macro)
* Changed name of GO:0034642 from "<new term>" to "mitochondrial migration along actin filament"
* Set definition of GO:0034642 to "The directed movement of a mitochondrion along a microfilament, mediated by motor proteins."
* Added definition dbxref GOC:mah to GO:0034642
* Added definition dbxref PMID:15979253 to GO:0034642
* Added definition dbxref PMID:16306220 to GO:0034642
* Added synonym "mitochondrial migration along microfilament" to GO:0034642
* Changed synonym scope of GO:0034642 from "Related" to "Exact"
* Added synonym "mitochondrial migration, actin-mediated" to GO:0034642
* Changed synonym scope of GO:0034642 from "Related" to "Exact"
* Added synonym "mitochondrion migration along microfilament" to GO:0034642
* Changed synonym scope of GO:0034642 from "Related" to "Exact"
* Added synonym "mitochondrion transport along actin filament" to GO:0034642
* Changed synonym scope of GO:0034642 from "Related" to "Exact"
* Copied GO:0034642 to GO:0030048 with type OBO_REL:is_a
* Copied GO:0034642 to GO:0051654 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034642
* Populated new object GO:0034643 (macro)
* Changed name of GO:0034643 from "<new term>" to "mitochondrion localization, microtubule-mediated"
* Set definition of GO:0034643 to "The directed movement of the mitochondrion to a specific location, by a process involving microtubules."
* Added definition dbxref GOC:mah to GO:0034643
* Added definition dbxref PMID:12972644 to GO:0034643
* Added definition dbxref PMID:15979253 to GO:0034643
* Added definition dbxref PMID:16306220 to GO:0034643
* Added synonym "microtubule-mediated mitochondrion localization" to GO:0034643
* Changed synonym scope of GO:0034643 from "Related" to "Exact"
* Added synonym "mitochondrial localization, microtubule-mediated" to GO:0034643
* Changed synonym scope of GO:0034643 from "Related" to "Exact"
* Copied GO:0034643 to GO:0051654 with type OBO_REL:is_a
* Copied GO:0034643 to GO:0007017 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034643
* Populated new object GO:0060274 (macro)
* Changed name of GO:0060274 from "<new term>" to "maintenance of stationary phase"
* Set definition of GO:0060274 to "The homeostatic process by which a population of cells changes its metabolic activity resulting in the rate of death in the population equaling the rate of reproduction. Stationary phase can be in response to limited nutrientsor a build-up of toxic substances in the environment."
* Added definition dbxref GOC:dph to GO:0060274
* Copied GO:0060274 to GO:0048874 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060274
* Populated new object GO:0060275 (macro)
* Changed name of GO:0060275 from "<new term>" to "maintenance of stationary phase in response to starvation"
* Set definition of GO:0060275 to "The homeostatic process by which a population of cells changes its metabolic activity resulting in the rate of death in the population equaling the rate of reproduction in response to limited nutrients in the environment."
* Added definition dbxref GOC:dph to GO:0060275
* Copied GO:0060275 to GO:0060274 with type OBO_REL:is_a
* Copied GO:0060275 to GO:0042594 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060275
* Populated new object GO:0060276 (macro)
* Changed name of GO:0060276 from "<new term>" to "maintenance of stationary phase in response to toxin"
* Set definition of GO:0060276 to "The homeostatic process by which a population of cells changes its metabolic activity resulting in the rate of death in the population equaling the rate of reproduction in response to a build-up of toxins in the environment."
* Added definition dbxref GOC:dph to GO:0060276
* Copied GO:0060276 to GO:0060274 with type OBO_REL:is_a
* Copied GO:0060276 to GO:0009636 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060276
* Set definition of GO:0000036 to "Enables the directed movement of acyl groups into, out of, within or between cells."
* Added definition dbxref ChEBI:22221 to GO:0000036
* Added definition dbxref GOC:cb to GO:0000036
* Set definition of GO:0008528 to "Combining with an extracellular or intracellular peptide to initiate a G-protein mediated change in cell activity. A G-protein is a signal transduction molecule that alternates between an inactive GDP-bound and an active GTP-bound state."
* Added definition dbxref GOC:dph to GO:0008528
* Added definition dbxref GOC:tb to GO:0008528
* Changed definition of GO:0009372 from "The process in which single-celled organisms, usually bacteria, monitor population density by detecting the concentration of small diffusible signal molecules." to "The cell-cell signaling process in which single-celled organisms, usually bacteria, monitor population density by detecting the concentration of small diffusible signal molecules."
* Deleted GO:0009372 --OBO_REL:is_a--> GO:0009373
* Deleted GO:0009372 --OBO_REL:is_a--> GO:0051704
* Copied GO:0009372 to GO:0007267 with type OBO_REL:is_a
* Copied GO:0009372 to GO:0048874 with type part_of
* Deleted GO:0015057 --OBO_REL:is_a--> GO:0008528
* Copied GO:0015057 to GO:0001653 with type OBO_REL:is_a
* Deleted GO:0015565 --OBO_REL:is_a--> GO:0015562
* Copied GO:0015565 to GO:0034639 with type OBO_REL:is_a
* Changed name of GO:0030473 from "nuclear migration, microtubule-mediated" to "nuclear migration along microtubule"
* Added synonym "nuclear migration, microtubule-mediated" to GO:0030473
* Changed synonym scope of GO:0030473 from "Related" to "Exact"
* Added synonym "nuclear migration, microfilament-mediated" to GO:0031022
* Changed synonym scope of GO:0031022 from "Related" to "Exact"
* Deleted GO:0034390 --OBO_REL:is_a--> GO:0006915
* Copied GO:0034390 to GO:0010657 with type OBO_REL:is_a
* Deleted GO:0034391 --OBO_REL:is_a--> GO:0042981
* Copied GO:0034391 to GO:0010660 with type OBO_REL:is_a
* Deleted GO:0034392 --OBO_REL:is_a--> GO:0043066
* Copied GO:0034392 to GO:0010656 with type OBO_REL:is_a
* Deleted GO:0034393 --OBO_REL:is_a--> GO:0043065
* Copied GO:0034393 to GO:0010661 with type OBO_REL:is_a
* Added synonym "mitochondrial migration along microtubule" to GO:0047497
* Changed synonym scope of GO:0047497 from "Related" to "Exact"
* Copied GO:0047497 to GO:0034643 with type OBO_REL:is_a
* Added synonym "homeostasis of cell number" to GO:0048872
* Added general dbxref GOC:dph to synonym homeostasis of cell number of GO:0048872
* Changed synonym scope of GO:0048872 from "Related" to "Exact"
* Copied GO:0048874 to GO:0051704 with type OBO_REL:is_a
* Added synonym "mitochondrial migration" to GO:0051654
* Changed synonym scope of GO:0051654 from "Related" to "Exact"
* Changed name of GO:0052546 from "plant-type cell wall pectin metabolic process" to "cell wall pectin metabolic process"
* Added synonym "plant-type cell wall pectin metabolic process" to GO:0052546
* Changed synonym scope of GO:0052546 from "Related" to "Exact"
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