[Go-diff] GO update 08/11/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Mon Aug 11 21:30:47 PDT 2008 

OBODIFF of gene_ontology_write.obo version 1.158 by 1.161

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0002115
* Created object of type obo:TERM with id GO:0034641
* Created object of type obo:TERM with id GO:0034644
* Created object of type obo:TERM with id GO:0034645
* Populated new object GO:0002115 (macro)
  * Changed name of GO:0002115 from "<new term>" to "store-operated calcium entry"
  * Added comment "SOCE is initiated by response to stiumlation of membrane receptors leading to the hydrolysis ofphosphatidylinositol bisphosphate (PIP2) , inositol 1,4,5-trisphosphate (IP3) generation, and IP3-mediated calcium ion release from the endoplasmic reticulum."
  * Set definition of GO:0002115 to "A calcium ion entry mechanism in the plasma membrane activated by the depletion of calcium ion from the internal calcium ion store in the endoplasmic reticulum."
  * Added definition dbxref GOC:hjd to GO:0002115
  * Added definition dbxref PMID:11120592 to GO:0002115
  * Added definition dbxref PMID:17956991 to GO:0002115
  * Added synonym "<new synonym>" to GO:0002115
  * Added synonym "calcium ion import" to GO:0002115
  * Changed synonym scope of GO:0002115 from "Related" to "Broad"
  * Added synonym "capacitative calcium entry" to GO:0002115
  * Changed synonym scope of GO:0002115 from "Related" to "Exact"
  * Added synonym "SOCE" to GO:0002115
  * Changed synonym scope of GO:0002115 from "Related" to "Exact"
  * Copied GO:0002115 to GO:0006816 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0002115
* Populated new object GO:0034641 (macro)
  * Changed name of GO:0034641 from "<new term>" to "cellular nitrogen compound metabolic process"
  * Set definition of GO:0034641 to "The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells."
  * Added definition dbxref GOC:mah to GO:0034641
  * Added synonym "cellular nitrogen compound metabolism" to GO:0034641
  * Changed synonym scope of GO:0034641 from "Related" to "Exact"
  * Copied GO:0034641 to GO:0044237 with type OBO_REL:is_a
  * Copied GO:0034641 to GO:0006807 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034641
* Populated new object GO:0034644 (macro)
  * Changed name of GO:0034644 from "<new term>" to "cellular response to UV"
  * Set definition of GO:0034644 to "A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers."
  * Added definition dbxref GOC:mah to GO:0034644
  * Added GO:0034644 to category gosubset_prok
  * Added synonym "cellular response to ultraviolet light stimulus" to GO:0034644
  * Changed synonym scope of GO:0034644 from "Related" to "Exact"
  * Added synonym "cellular response to ultraviolet radiation stimulus" to GO:0034644
  * Changed synonym scope of GO:0034644 from "Related" to "Exact"
  * Added synonym "cellular response to UV light stimulus" to GO:0034644
  * Changed synonym scope of GO:0034644 from "Related" to "Exact"
  * Added synonym "cellular response to UV radiation stimulus" to GO:0034644
  * Changed synonym scope of GO:0034644 from "Related" to "Exact"
  * Copied GO:0034644 to GO:0051716 with type OBO_REL:is_a
  * Copied GO:0034644 to GO:0009411 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034644
* Populated new object GO:0034645 (macro)
  * Changed name of GO:0034645 from "<new term>" to "cellular macromolecule biosynthetic process"
  * Set definition of GO:0034645 to "The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, carried out by individual cells."
  * Added definition dbxref GOC:mah to GO:0034645
  * Copied GO:0034645 to GO:0009059 with type OBO_REL:is_a
  * Copied GO:0034645 to GO:0044260 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034645
* Changed definition of GO:0001548 from "Formation of one central cavity separating the oocyte/cumulus complex from mural granulosa and theca cells." to "The menstrual cycle process by which one central cavity separating the oocyte/cumulus complex from mural granulosa and theca cells is formed during the various stages of oogenesis."
* Added definition dbxref GOC:dph to GO:0001548
* Added definition dbxref GOC:tb to GO:0001548
* Deleted GO:0001548 --part_of--> GO:0048164
* Deleted GO:0001548 --part_of--> GO:0048163
* Deleted GO:0001548 --part_of--> GO:0048165
* Changed definition of GO:0003003 from "The menstual cycle process by which one central cavity separating the oocyte/cumulus complex from mural granulosa and theca cells is formed during the fused antrum stage of oogenesis." to "The menstrual cycle process by which one central cavity separating the oocyte/cumulus complex from mural granulosa and theca cells is formed during the fused antrum stage of oogenesis."
* Deleted GO:0003003 --OBO_REL:is_a--> GO:0022602
* Deleted GO:0003003 --part_of--> GO:0001548
* Copied GO:0003003 to GO:0048165 with type part_of
* Copied GO:0003003 to GO:0001548 with type OBO_REL:is_a
* Changed definition of GO:0003004 from "The menstual cycle process by which one central cavity separating the oocyte/cumulus complex from mural granulosa and theca cells is formed during the antral spaces stage of oogenesis." to "The menstrual cycle process by which one central cavity separating the oocyte/cumulus complex from mural granulosa and theca cells is formed during the antral spaces stage of oogenesis."
* Deleted GO:0003004 --OBO_REL:is_a--> GO:0022602
* Deleted GO:0003004 --part_of--> GO:0001548
* Copied GO:0003004 to GO:0001548 with type OBO_REL:is_a
* Copied GO:0003004 to GO:0048164 with type part_of
* Changed definition of GO:0003005 from "The menstual cycle process by which one central cavity separating the oocyte/cumulus complex from mural granulosa and theca cells is formed during the scattered antral spaces stage of oogenesis." to "The menstrual cycle process by which one central cavity separating the oocyte/cumulus complex from mural granulosa and theca cells is formed during the scattered antral spaces stage of oogenesis."
* Deleted GO:0003005 --OBO_REL:is_a--> GO:0022602
* Deleted GO:0003005 --part_of--> GO:0001548
* Copied GO:0003005 to GO:0048163 with type part_of
* Copied GO:0003005 to GO:0001548 with type OBO_REL:is_a
* Changed definition of GO:0006189 from "The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, beginning with the synthesis of a purine ring from simpler precursors." to "The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate."
* Copied GO:0006412 to GO:0034645 with type OBO_REL:is_a
* Deleted GO:0009101 --OBO_REL:is_a--> GO:0009059
* Copied GO:0009101 to GO:0034645 with type OBO_REL:is_a
* Deleted GO:0009308 --OBO_REL:is_a--> GO:0006807
* Deleted GO:0009308 --OBO_REL:is_a--> GO:0044237
* Copied GO:0009308 to GO:0034641 with type OBO_REL:is_a
* Deleted GO:0009439 --OBO_REL:is_a--> GO:0006807
* Copied GO:0009439 to GO:0034641 with type OBO_REL:is_a
* Deleted GO:0016458 --OBO_REL:is_a--> GO:0010468
* Copied GO:0016458 to GO:0010629 with type OBO_REL:is_a
* Deleted GO:0018876 --OBO_REL:is_a--> GO:0006807
* Copied GO:0018876 to GO:0034641 with type OBO_REL:is_a
* Deleted GO:0018938 --OBO_REL:is_a--> GO:0006807
* Copied GO:0018938 to GO:0034641 with type OBO_REL:is_a
* Deleted GO:0019332 --OBO_REL:is_a--> GO:0006807
* Copied GO:0019332 to GO:0034641 with type OBO_REL:is_a
* Deleted GO:0019499 --OBO_REL:is_a--> GO:0006807
* Copied GO:0019499 to GO:0034641 with type OBO_REL:is_a
* Copied GO:0030995 to GO:0044248 with type OBO_REL:is_a
* Changed definition of GO:0034075 from "Catalysis of the reaction: oxidosqualene = arabidiol ((3S,13R,14R)-malabarica-17E,21-dien-3beta,14-diol)." to "Catalysis of the reaction: oxidosqualene + H2O= arabidiol ((13R,14R,17E)-malabarica-17,21-diene-3beta,14-diol)."
* Deleted definition dbxref PMID:18033581 from GO:0034075
* Added definition dbxref PMID:16774269 to GO:0034075
* Added definition dbxref PMID:17474751 to GO:0034075
* Deleted GO:0042089 --OBO_REL:is_a--> GO:0009059
* Copied GO:0042089 to GO:0034645 with type OBO_REL:is_a
* Deleted GO:0042158 --OBO_REL:is_a--> GO:0009059
* Copied GO:0042158 to GO:0034645 with type OBO_REL:is_a
* Deleted GO:0042541 --OBO_REL:is_a--> GO:0009059
* Copied GO:0042541 to GO:0034645 with type OBO_REL:is_a
* Copied GO:0042770 to GO:0033554 with type OBO_REL:is_a
* Deleted GO:0043172 --OBO_REL:is_a--> GO:0009059
* Copied GO:0043172 to GO:0034645 with type OBO_REL:is_a
* Deleted GO:0043603 --OBO_REL:is_a--> GO:0044237
* Deleted GO:0043603 --OBO_REL:is_a--> GO:0006807
* Copied GO:0043603 to GO:0034641 with type OBO_REL:is_a
* Copied GO:0044265 to GO:0044260 with type OBO_REL:is_a
* Added synonym "cellular nitrogen compound catabolic process" to GO:0044270
* Changed synonym scope of GO:0044270 from "Related" to "Exact"
* Deleted GO:0044270 --OBO_REL:is_a--> GO:0006807
* Copied GO:0044270 to GO:0034641 with type OBO_REL:is_a
* Added synonym "cellular nitrogen compound biosynthetic process" to GO:0044271
* Changed synonym scope of GO:0044271 from "Related" to "Exact"
* Deleted GO:0044271 --OBO_REL:is_a--> GO:0006807
* Copied GO:0044271 to GO:0034641 with type OBO_REL:is_a
* Deleted GO:0046415 --OBO_REL:is_a--> GO:0006807
* Copied GO:0046415 to GO:0034641 with type OBO_REL:is_a

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