[Go-diff] GO update 08/14/2008

Thu Aug 14 21:30:46 PDT 2008

OBODIFF of gene_ontology_write.obo version 1.164 by 1.166

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034654
* Created object of type obo:TERM with id GO:0034655
* Created object of type obo:TERM with id GO:0034656
* Created object of type obo:TERM with id GO:0034657
* Created object of type obo:TERM with id GO:0034658
* Created object of type obo:TERM with id GO:0034659
* Created object of type obo:TERM with id GO:0080007
* Created object of type obo:TERM with id GO:0080008
* Created object of type obo:TERM with id GO:0080009
* Created object of type obo:TERM with id GO:0080010
* Populated new object GO:0034654 (macro)
  * Changed name of GO:0034654 from "<new term>" to "nucleobase, nucleoside, nucleotide and nucleic acid biosynthetic process"
  * Set definition of GO:0034654 to "The chemical reactions and pathways resulting in the formation of nucleobases, nucleosides, nucleotides and nucleic acids."
  * Added definition dbxref GOC:mah to GO:0034654
  * Added GO:0034654 to category gosubset_prok
  * Added synonym "nucleobase, nucleoside, nucleotide and nucleic acid anabolism" to GO:0034654
  * Changed synonym scope of GO:0034654 from "Related" to "Exact"
  * Added synonym "nucleobase, nucleoside, nucleotide and nucleic acid biosynthesis" to GO:0034654
  * Changed synonym scope of GO:0034654 from "Related" to "Exact"
  * Added synonym "nucleobase, nucleoside, nucleotide and nucleic acid formation" to GO:0034654
  * Changed synonym scope of GO:0034654 from "Related" to "Exact"
  * Added synonym "nucleobase, nucleoside, nucleotide and nucleic acid synthesis" to GO:0034654
  * Changed synonym scope of GO:0034654 from "Related" to "Exact"
  * Copied GO:0034654 to GO:0044249 with type OBO_REL:is_a
  * Copied GO:0034654 to GO:0006139 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034654
* Populated new object GO:0034655 (macro)
  * Changed name of GO:0034655 from "<new term>" to "nucleobase, nucleoside, nucleotide and nucleic acid catabolic process"
  * Set definition of GO:0034655 to "The chemical reactions and pathways resulting in the breakdown of nucleobases, nucleosides, nucleotides and nucleic acids."
  * Added definition dbxref GOC:mah to GO:0034655
  * Added GO:0034655 to category gosubset_prok
  * Added synonym "nucleobase, nucleoside, nucleotide and nucleic acid breakdown" to GO:0034655
  * Changed synonym scope of GO:0034655 from "Related" to "Exact"
  * Added synonym "nucleobase, nucleoside, nucleotide and nucleic acid catabolism" to GO:0034655
  * Changed synonym scope of GO:0034655 from "Related" to "Exact"
  * Added synonym "nucleobase, nucleoside, nucleotide and nucleic acid degradation" to GO:0034655
  * Changed synonym scope of GO:0034655 from "Related" to "Exact"
  * Copied GO:0034655 to GO:0006139 with type OBO_REL:is_a
  * Copied GO:0034655 to GO:0044248 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034655
* Populated new object GO:0034656 (macro)
  * Changed name of GO:0034656 from "<new term>" to "nucleobase, nucleoside and nucleotide catabolic process"
  * Set definition of GO:0034656 to "The chemical reactions and pathways resulting in the breakdown of nucleobases, nucleosides and nucleotides."
  * Added definition dbxref GOC:mah to GO:0034656
  * Added synonym "nucleobase, nucleoside and nucleotide breakdown" to GO:0034656
  * Changed synonym scope of GO:0034656 from "Related" to "Exact"
  * Added synonym "nucleobase, nucleoside and nucleotide catabolism" to GO:0034656
  * Changed synonym scope of GO:0034656 from "Related" to "Exact"
  * Added synonym "nucleobase, nucleoside and nucleotide degradation" to GO:0034656
  * Changed synonym scope of GO:0034656 from "Related" to "Exact"
  * Copied GO:0034656 to GO:0034655 with type OBO_REL:is_a
  * Copied GO:0034656 to GO:0055086 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034656
* Populated new object GO:0034657 (macro)
  * Changed name of GO:0034657 from "<new term>" to "GID complex"
  * Set definition of GO:0034657 to "A protein complex with ubiquitin ligase activity that is involved in proteasomal degradation of fructose-1,6-bisphosphatase (FBPase) and phosphoenolpyruvate carboxykinase during the transition from gluconeogenic to glycolytic growth conditions. In S. cerevisiae, the GID (Glucose Induced degradation Deficient) complex consists of Vid30p, Rmd5p, Vid24p, Vid28p, Gid7p, Gid8p, and Fyv10p."
  * Added definition dbxref PMID:12686616 to GO:0034657
  * Added definition dbxref PMID:18508925 to GO:0034657
  * Copied GO:0034657 to GO:0043234 with type OBO_REL:is_a
  * Copied GO:0034657 to GO:0044424 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034657
* Populated new object GO:0034658 (macro)
  * Changed name of GO:0034658 from "<new term>" to "isopropylmalate transmembrane transporter activity"
  * Set definition of GO:0034658 to "Catalysis of the transfer of isopropylmalate from one side of the membrane to the other."
  * Added definition dbxref GOC:mah to GO:0034658
  * Copied GO:0034658 to GO:0005310 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034658
* Populated new object GO:0034659 (macro)
  * Changed name of GO:0034659 from "<new term>" to "isopropylmalate transport"
  * Set definition of GO:0034659 to "The directed movement of isopropylmalate into, out of, within or between cells."
  * Added definition dbxref GOC:mah to GO:0034659
  * Copied GO:0034659 to GO:0006835 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034659
* Populated new object GO:0080007 (macro)
  * Changed name of GO:0080007 from "<new term>" to "S-nitrosoglutathione reductase activity"
  * Set definition of GO:0080007 to "Catalysis of the reaction: S-nitrosoglutathione (GSNO) + NADH = GSNHOH + NAD, GSNHOH can be further metabolized to ammonia (NH3) and glutathione disulphide (GSSG)."
  * Added definition dbxref PMID:11260719 to GO:0080007
  * Copied GO:0080007 to GO:0016657 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0080007
* Populated new object GO:0080008 (macro)
  * Changed name of GO:0080008 from "<new term>" to "CUL4 RING ubiquitin ligase complex"
  * Set definition of GO:0080008 to "A ubiquitin ligase complex in which a cullin from the Cul4 family and a RING domain protein form the catalytic core; substrate specificity is conferred by an adaptor protein."
  * Added definition dbxref PMID:16792691 to GO:0080008
  * Added definition dbxref PMID:18223036 to GO:0080008
  * Added definition dbxref PMID:18552200 to GO:0080008
  * Copied GO:0080008 to GO:0031461 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0080008
* Populated new object GO:0080009 (macro)
  * Changed name of GO:0080009 from "<new term>" to "mRNA methylation"
  * Set definition of GO:0080009 to "The posttranscriptional addition of methyl groups to specific residues in an mRNA molecule."
  * Added definition dbxref PMID:18505803 to GO:0080009
  * Copied GO:0080009 to GO:0016556 with type OBO_REL:is_a
  * Copied GO:0080009 to GO:0001510 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0080009
* Populated new object GO:0080010 (macro)
  * Changed name of GO:0080010 from "<new term>" to "regulation of oxygen and reactive oxygen species metabolic process"
  * Set definition of GO:0080010 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH)."
  * Added definition dbxref PMID:18450450 to GO:0080010
  * Copied GO:0080010 to GO:0031323 with type OBO_REL:is_a
  * Copied GO:0080010 to GO:0006800 with type regulates
  * Assigned namespace "biological_process" to GO:0080010
* Changed definition of GO:0000031 from "Catalysis of the transfer of an mannosylphosphate group from one compound to another." to "Catalysis of the transfer of a mannosylphosphate group from one compound to another."
* Changed definition of GO:0000405 from "Interacting selective with DNA that contains a bubble. A bubble occurs when DNA contains an region of unpaired, single-stranded DNA flanked on both sides by regions of paired, double-stranded DNA." to "Interacting selective with DNA that contains a bubble. A bubble occurs when DNA contains a region of unpaired, single-stranded DNA flanked on both sides by regions of paired, double-stranded DNA."
* Changed definition of GO:0001510 from "Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in an polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor." to "Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor."
* Changed definition of GO:0002054 from "Interacting selectively with an nucleobase, any of a class of pyrmidines or purines, organic nitrogenous bases." to "Interacting selectively with a nucleobase, any of a class of pyrmidines or purines, organic nitrogenous bases."
* Changed definition of GO:0002066 from "The process whose specific outcome is the progression of an columnar/cuboidal epithelial cell over time, from its formation to the mature structure. A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube." to "The process whose specific outcome is the progression of a columnar/cuboidal epithelial cell over time, from its formation to the mature structure. A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube."
* Changed definition of GO:0002295 from "The process whereby an CD4-positive, alpha-beta T cell becomes committed to becoming a T-helper cell, a CD4-positive, alpha-beta T cell specialized to promote various immunological processes." to "The process whereby a CD4-positive, alpha-beta T cell becomes committed to becoming a T-helper cell, a CD4-positive, alpha-beta T cell specialized to promote various immunological processes."
* Changed definition of GO:0002296 from "The process whereby an CD4-positive, alpha-beta T cell becomes committed to becoming a T-helper 1 cell, a CD4-positive, alpha-beta T cell specialized to promote immunological processes often associated with resistance to intracellular bacteria, fungi, and protozoa, and pathological conditions such as arthritis." to "The process whereby a CD4-positive, alpha-beta T cell becomes committed to becoming a T-helper 1 cell, a CD4-positive, alpha-beta T cell specialized to promote immunological processes often associated with resistance to intracellular bacteria, fungi, and protozoa, and pathological conditions such as arthritis."
* Changed definition of GO:0002297 from "The process whereby an CD4-positive, alpha-beta T cell becomes committed to becoming a T-helper 2 cell, a CD4-positive, alpha-beta T cell specialized to promote immunological processes often associated with resistance to extracellular organisms such as helminths, enhanced production of particular antibody isotypes, and pathological conditions such as allergy." to "The process whereby a CD4-positive, alpha-beta T cell becomes committed to becoming a T-helper 2 cell, a CD4-positive, alpha-beta T cell specialized to promote immunological processes often associated with resistance to extracellular organisms such as helminths, enhanced production of particular antibody isotypes, and pathological conditions such as allergy."
* Changed definition of GO:0002298 from "The process whereby an antigenically nave CD4-positive, alpha-beta T cell acquires the specialized features of an CD4-positive, CD25-positive, alpha-beta regulatory T cell during an immune response." to "The process whereby an antigenically nave CD4-positive, alpha-beta T cell acquires the specialized features of a CD4-positive, CD25-positive, alpha-beta regulatory T cell during an immune response."
* Changed definition of GO:0002304 from "The process whereby a precursor cell type acquires the specialized features of an gamma-delta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways." to "The process whereby a precursor cell type acquires the specialized features of a gamma-delta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways."
* Changed definition of GO:0002311 from "The expansion of an gamma-delta T cell population by cell division during an immune response." to "The expansion of a gamma-delta T cell population by cell division during an immune response."
* Changed definition of GO:0002491 from "The process by which an antigen-presenting cell expresses an peptide antigen of endogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein." to "The process by which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein."
* Changed definition of GO:0002495 from "The process by which an antigen-presenting cell expresses an peptide antigen on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein." to "The process by which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein."
* Changed comment from "Note that the bond resulting from this reaction is an carboxylic acid ester bond, linking the alpha carboxyl group of the amino acid to either the 2' or 3' hydroxyl of the 3'- terminal adenyl residue of the tRNA." to "Note that the bond resulting from this reaction is a carboxylic acid ester bond, linking the alpha carboxyl group of the amino acid to either the 2' or 3' hydroxyl of the 3'- terminal adenyl residue of the tRNA."
* Changed definition of GO:0005254 from "Catalysis of facilitated diffusion of an chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism." to "Catalysis of facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism."
* Changed definition of GO:0005262 from "Catalysis of facilitated diffusion of an calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism." to "Catalysis of facilitated diffusion of a calcium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism."
* Changed definition of GO:0006496 from "The glycosylation of an N atom of a free alpha amino terminal of a peptide." to "The glycosylation of a nitrogen atom of a free alpha amino terminal of a peptide."
* Changed definition of GO:0007499 from "A cell-cell signaling process occuring between the two gastrulation-generated layers of the ectoderm and the mesoderm." to "A cell-cell signaling process occurring between the two gastrulation-generated layers of the ectoderm and the mesoderm."
* Changed definition of GO:0008011 from "The action of a molecule that contributes to the structural integrity of the chitin-based cuticle of an pupa." to "The action of a molecule that contributes to the structural integrity of the chitin-based cuticle of a pupa."
* Deleted GO:0008054 --OBO_REL:is_a--> GO:0051726
* Copied GO:0009164 to GO:0034656 with type OBO_REL:is_a
* Changed definition of GO:0009341 from "A multimeric enzyme complex that in E. coli is an heterooctamer made up of four alpha subunits and four beta subunits. Catalyzes the hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides." to "A multimeric enzyme complex that in E. coli is a heterooctamer made up of four alpha subunits and four beta subunits. Catalyzes the hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides."
* Changed definition of GO:0009767 from "A process, occuring as part of photosynthesis, whereby light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient." to "A process, occurring as part of photosynthesis, whereby light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient."
* Changed definition of GO:0009814 from "A response of an plant to a pathogenic agent that prevents the occurrence or spread of disease." to "A response of a plant to a pathogenic agent that prevents the occurrence or spread of disease."
* Changed definition of GO:0014870 from "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an muscle inactivity stimulus." to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muscle inactivity stimulus."
* Changed definition of GO:0015254 from "Catalysis of facilitated diffusion of an glycerol (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism." to "Catalysis of facilitated diffusion of glycerol (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism."
* Changed definition of GO:0015264 from "Catalysis of facilitated diffusion of an methylammonium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. Methylammonium is CH3NH2." to "Catalysis of facilitated diffusion of methylammonium (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. Methylammonium is CH3NH2."
* Changed definition of GO:0015333 from "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: peptide(out) + H+(out) = peptide(in) + H+(in). Catalysis of the transfer of an peptide from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by hydrogen ion movement." to "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: peptide(out) + H+(out) = peptide(in) + H+(in). Catalysis of the transfer of a peptide from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by hydrogen ion movement."
* Changed definition of GO:0016416 from "Catalysis of the transfer of an palmitoyl group to an oxygen atom on the acceptor molecule." to "Catalysis of the transfer of a palmitoyl group to an oxygen atom on the acceptor molecule."
* Changed definition of GO:0016419 from "Catalysis of the transfer of an malonyl group to a sulfur atom on the acceptor molecule." to "Catalysis of the transfer of a malonyl group to a sulfur atom on the acceptor molecule."
* Changed definition of GO:0016420 from "Catalysis of the transfer of an malonyl (HOOC-CH2-CO-) group to an acceptor molecule." to "Catalysis of the transfer of a malonyl (HOOC-CH2-CO-) group to an acceptor molecule."
* Changed definition of GO:0016748 from "Catalysis of the transfer of an succinyl (3-carboxypropanoyl) group to an acceptor molecule." to "Catalysis of the transfer of a succinyl (3-carboxypropanoyl) group to an acceptor molecule."
* Changed definition of GO:0016749 from "Catalysis of the transfer of an succinyl group to a nitrogen atom on the acceptor molecule." to "Catalysis of the transfer of a succinyl group to a nitrogen atom on the acceptor molecule."
* Changed definition of GO:0016750 from "Catalysis of the transfer of an succinyl group to an oxygen atom on the acceptor molecule." to "Catalysis of the transfer of a succinyl group to an oxygen atom on the acceptor molecule."
* Changed definition of GO:0016751 from "Catalysis of the transfer of an succinyl group to a sulfur atom on the acceptor molecule." to "Catalysis of the transfer of a succinyl group to a sulfur atom on the acceptor molecule."
* Changed definition of GO:0016752 from "Catalysis of the transfer of an sinapoyl group to an acceptor molecule." to "Catalysis of the transfer of a sinapoyl group to an acceptor molecule."
* Changed definition of GO:0016753 from "Catalysis of the transfer of an sinapoyl group to an oxygen atom on the acceptor molecule." to "Catalysis of the transfer of a sinapoyl group to an oxygen atom on the acceptor molecule."
* Changed definition of GO:0019107 from "Catalysis of the transfer of an myristoyl (CH3-[CH2]12-CO-) group to an acceptor molecule." to "Catalysis of the transfer of a myristoyl (CH3-[CH2]12-CO-) group to an acceptor molecule."
* Changed definition of GO:0019187 from "Catalysis of the transfer of a mannose residue from GDP-mannose to an oligosaccharide, forming an beta-1,4-linkage." to "Catalysis of the transfer of a mannose residue from GDP-mannose to an oligosaccharide, forming a beta-1,4-linkage."
* Changed definition of GO:0019706 from "Catalysis of the transfer of an palmitoleyl group to a sulfur atom on the cysteine of a protein molecule." to "Catalysis of the transfer of a palmitoleyl group to a sulfur atom on the cysteine of a protein molecule."
* Changed definition of GO:0019886 from "The process by which an antigen-presenting cell expresses an peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein." to "The process by which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein."
* Changed definition of GO:0031076 from "The process occuring during the embryonic phase whose specific outcome is the progression of the eye over time, from its formation to the mature structure." to "The process occurring during the embryonic phase whose specific outcome is the progression of the eye over time, from its formation to the mature structure."
* Changed definition of GO:0031077 from "The process occuring during the post-embryonic phase whose specific outcome is the progression of the eye over time, from its formation to the mature structure." to "The process occurring during the post-embryonic phase whose specific outcome is the progression of the eye over time, from its formation to the mature structure."
* Changed definition of GO:0031389 from "A pentameric complex related to replication factor C, which loads a trimeric complex of checkpoint proteins (known as the checkpoint clamp or 9-1-1 complex) onto DNA at damage sites; functions in DNA damage cell cycle checkpoints. In Saccharomyces the subunits are known as Rad17p, Rfc2p, Rfc3p, Rfc4p, and Rfc5p." to "A pentameric  protein complex related to replication factor C, which loads a trimeric complex of checkpoint proteins (known as the checkpoint clamp or 9-1-1 complex) onto DNA at damage sites; functions in DNA damage cell cycle checkpoints. In Schizosaccharomyces pombe the subunits are known as Rad17,
Rfc2, Rfc3, Rfc4, and Rfc5, while in Saccharomyces cerevisiae the subunits are known as Rad24p, Rfc2p, Rfc3p, Rfc4p, and Rfc5p."
* Added synonym "Rad24p RFC-like complex" to GO:0031389
* Changed synonym scope of GO:0031389 from "Related" to "Exact"
* Deleted GO:0031464 --OBO_REL:is_a--> GO:0031461
* Copied GO:0031464 to GO:0080008 with type OBO_REL:is_a
* Deleted GO:0031465 --OBO_REL:is_a--> GO:0031461
* Copied GO:0031465 to GO:0080008 with type OBO_REL:is_a
* Changed definition of GO:0032089 from "Interacting selectively with a NACHT (NAIP, CIITA, HET-E and TP1) domain. The NACHT domain consists of seven distinct conserved motifs, including an ATP/GTPase specific P-loop, an Mg(2+)-binding site and five more specific motifs." to "Interacting selectively with a NACHT (NAIP, CIITA, HET-E and TP1) domain. The NACHT domain consists of seven distinct conserved motifs, including an ATP/GTPase specific P-loop, a Mg(2+)-binding site and five more specific motifs."
* Changed definition of GO:0032137 from "Interacting selectively with double-stranded DNA containing an G/T mispair." to "Interacting selectively with double-stranded DNA containing a G/T mispair."
* Changed definition of GO:0033059 from "The deposition or aggregation of coloring matter in an cell." to "The deposition or aggregation of coloring matter in a cell."
* Changed definition of GO:0033217 from "Modulation of the frequency, rate or extent of transcription from an from RNA polymerase II promoter as a result of a stimulus indicating the organism is deprived of iron ions." to "Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is deprived of iron ions."
* Changed definition of GO:0033820 from "Catalysis of the reaction: Transfers an alpha-D-glucosyl residue from UDP-glucose to an hydroxymethylcytosine residue in DNA." to "Catalysis of the reaction: Transfers an alpha-D-glucosyl residue from UDP-glucose to a hydroxymethylcytosine residue in DNA."
* Changed definition of GO:0033821 from "Catalysis of the reaction: Transfers a beta-D-glucosyl residue from UDP-glucose to an hydroxymethylcytosine residue in DNA." to "Catalysis of the reaction: Transfers a beta-D-glucosyl residue from UDP-glucose to a hydroxymethylcytosine residue in DNA."
* Changed definition of GO:0034225 from "Modulation of the frequency, rate or extent of transcription from an from RNA polymerase II promoter as a result of a stimulus indicating the organism is deprived of zinc ions." to "Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is deprived of zinc ions."
* Changed definition of GO:0034260 from "Any process that stops or reduces the rate of GTP hydrolysis by an GTPase." to "Any process that stops or reduces the rate of GTP hydrolysis by a GTPase."
* Deleted GO:0034404 --OBO_REL:is_a--> GO:0044249
* Copied GO:0034404 to GO:0034654 with type OBO_REL:is_a
* Changed definition of GO:0034650 from "The chemical reactions and pathways involving cortisol, the steroid hormone 11-beta-17,21-trihydroxypregn-4-ene-3,20-dione. Cortisol is synthesized from cholesterol in the adrenal gland and controls carbohydrate, fat and protein metabolism and has anti-inflammatory
properties." to "The chemical reactions and pathways involving cortisol, the steroid hormone 11-beta-17,21-trihydroxypregn-4-ene-3,20-dione. Cortisol is synthesized from cholesterol in the adrenal gland and controls carbohydrate, fat and protein metabolism and has anti-inflammatory properties."
* Changed definition of GO:0034651 from "The chemical reactions and pathways resulting in the formation of cortisol, the steroid hormone 11-beta-17,21-trihydroxypregn-4-ene-3,20-dione. Cortisol is synthesized from cholesterol in the adrenal gland and controls carbohydrate, fat and protein metabolism and has anti-inflammatory
properties." to "The chemical reactions and pathways resulting in the formation of cortisol, the steroid hormone 11-beta-17,21-trihydroxypregn-4-ene-3,20-dione. Cortisol is synthesized from cholesterol in the adrenal gland and controls carbohydrate, fat and protein metabolism and has anti-inflammatory properties."
* Changed definition of GO:0042150 from "A process of DNA recombination occuring within a plasmid or between plasmids and other plasmids or DNA molecules." to "A process of DNA recombination occurring within a plasmid or between plasmids and other plasmids or DNA molecules."
* Changed definition of GO:0042539 from "A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment." to "A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment."
* Changed definition of GO:0042671 from "Process by which a cell becomes capable of differentiating autonomously into an retinal cone cell regardless of its environment; upon determination, the cell fate cannot be reversed." to "Process by which a cell becomes capable of differentiating autonomously into a retinal cone cell regardless of its environment; upon determination, the cell fate cannot be reversed."
* Changed definition of GO:0043619 from "Modulation of the frequency, rate or extent of transcription from an from RNA polymerase II promoter as a result of a stimulus indicating the organism is under oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals." to "Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals."
* Copied GO:0046113 to GO:0034656 with type OBO_REL:is_a
* Changed definition of GO:0048761 from "The process whereby a relatively unspecialized cell acquires specialized features of a collenchyma cell. This is a plant cell in which the primary cell walls are unevenly thickened, with most thickening occuring at the cell corners. Cells are living and able to grow, they are elongated, and lignin and secondary walls absent. Collenchyma cells make up collenchyma tissue which acts as a supporting tissue in growing shoots, leaves and petioles. This tissue is often arranged in cortical ribs, as seen prominently in celery and rhubarb petioles." to "The process whereby a relatively unspecialized cell acquires specialized features of a collenchyma cell. This is a plant cell in which the primary cell walls are unevenly thickened, with most thickening occurring at the cell corners. Cells are living and able to grow, they are elongated, and lignin and secondary walls absent. Collenchyma cells make up collenchyma tissue which acts as a supporting tissue in growing shoots, leaves and petioles. This tissue is often arranged in cortical ribs, as seen prominently in celery and rhubarb petioles."
* Changed definition of GO:0050735 from "Catalysis of the transfer of an malonyl group to a nitrogen atom on the acceptor molecule." to "Catalysis of the transfer of a malonyl group to a nitrogen atom on the acceptor molecule."
* Changed definition of GO:0050736 from "Catalysis of the transfer of an malonyl group to an oxygen atom on the acceptor molecule." to "Catalysis of the transfer of a malonyl group to an oxygen atom on the acceptor molecule."
* Changed definition of GO:0051361 from "The formation of a fluorescent protein chromophore cross-link from the alpha-carboxyl carbon of residue n, an lysine, to the alpha-amino nitrogen of residue n+2, a glycine, and a dehydration to form a double bond to the alpha-amino nitrogen of residue n+1. This cross-linking is coupled with a dehydrogenation of residue n+1 to form a double bond between the alpha and beta carbons." to "The formation of a fluorescent protein chromophore cross-link from the alpha-carboxyl carbon of residue n, a lysine, to the alpha-amino nitrogen of residue n+2, a glycine, and a dehydration to form a double bond to the alpha-amino nitrogen of residue n+1. This cross-linking is coupled with a dehydrogenation of residue n+1 to form a double bond between the alpha and beta carbons."
* Changed definition of GO:0055015 from "The process whose specific outcome is the progression of an ventricular cardiac muscle cell over time, from its formation to the mature state. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood away from the organ." to "The process whose specific outcome is the progression of a ventricular cardiac muscle cell over time, from its formation to the mature state. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood away from the organ."
* Changed definition of GO:0060135 from "A reproductive process occuring in the mother that allows an embryo or fetus to develop within it." to "A reproductive process occurring in the mother that allows an embryo or fetus to develop within it."
* Changed definition of GO:0060136 from "A reproductive process occuring in the embryo or fetus that allows the embryo or fetus to develop within the mother." to "A reproductive process occurring in the embryo or fetus that allows the embryo or fetus to develop within the mother."
* Changed definition of GO:0060137 from "A reproductive process occuring in the mother that results in birth." to "A reproductive process occurring in the mother that results in birth."
* Changed definition of GO:0060138 from "A reproductive process occuring in the embryo that results in birth." to "A reproductive process occurring in the embryo that results in birth."
* Changed definition of GO:0060144 from "The set of cellular processes occuring in the host cell that contribute to the process of posttranscriptional gene inactivation ('silencing') both of viral gene(s), and host gene(s) homologous to the viral genes." to "The set of cellular processes occurring in the host cell that contribute to the process of posttranscriptional gene inactivation ('silencing') both of viral gene(s), and host gene(s) homologous to the viral genes."