[Go-diff] GO update 08/22/2008

Fri Aug 22 21:30:45 PDT 2008

OBODIFF of gene_ontology_write.obo version 1.179 by 1.181

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0060291
* Created object of type obo:TERM with id GO:0060292
* Created object of type obo:TERM with id GO:0060293
* Created object of type obo:TERM with id GO:0060294
* Created object of type obo:TERM with id GO:0060295
* Created object of type obo:TERM with id GO:0060296
* Created object of type obo:TERM with id GO:0060297
* Created object of type obo:TERM with id GO:0060298
* Created object of type obo:TERM with id GO:0060299
* Created object of type obo:TERM with id GO:0060300
* Created object of type obo:TERM with id GO:0060301
* Created object of type obo:TERM with id GO:0060302
* Populated new object GO:0060291 (macro)
  * Changed name of GO:0060291 from "<new term>" to "long-term synaptic potentiation"
  * Set definition of GO:0060291 to "A process that modulates synaptic plasticity such that synapses are changed resulting in the increase in the rate, or frequency of synaptic transmission at the synapse."
  * Added definition dbxref GOC:dgh to GO:0060291
  * Added definition dbxref GOC:dph to GO:0060291
  * Added synonym "long-term potentiation" to GO:0060291
  * Added general dbxref GOC:dph to synonym long-term potentiation of GO:0060291
  * Changed synonym scope of GO:0060291 from "Related" to "Broad"
  * Added synonym "LTP" to GO:0060291
  * Added general dbxref GOC:dph to synonym LTP of GO:0060291
  * Copied GO:0060291 to GO:0048167 with type OBO_REL:is_a
  * Copied GO:0060291 to GO:0050806 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060291
* Populated new object GO:0060292 (macro)
  * Changed name of GO:0060292 from "<new term>" to "long term synaptic depression"
  * Set definition of GO:0060292 to "A process that modulates synaptic plasticity such that synapses are changed resulting in the decrease in the rate, or frequency of synaptic transmission at the synapse."
  * Added definition dbxref GOC:dgh to GO:0060292
  * Added definition dbxref GOC:dph to GO:0060292
  * Added synonym "long term depression" to GO:0060292
  * Added general dbxref GOC:dph to synonym long term depression of GO:0060292
  * Changed synonym scope of GO:0060292 from "Related" to "Broad"
  * Added synonym "LTD" to GO:0060292
  * Added general dbxref GOC:dph to synonym LTD of GO:0060292
  * Copied GO:0060292 to GO:0048167 with type OBO_REL:is_a
  * Copied GO:0060292 to GO:0050805 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060292
* Populated new object GO:0060293 (macro)
  * Changed name of GO:0060293 from "<new term>" to "germ plasm"
  * Set definition of GO:0060293 to "Differentiated cytoplasm associated with a pole of an oocyte, egg or early embryo that will be inherited by the cells that will give rise to the germ line."
  * Added definition dbxref GOC:dph to GO:0060293
  * Copied GO:0060293 to GO:0045495 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0060293
* Populated new object GO:0060294 (macro)
  * Changed name of GO:0060294 from "<new term>" to "cilium movement involved in ciliary motility"
  * Set definition of GO:0060294 to "Movement of cilia mediated by motor proteins that contributes to the movement of a cell."
  * Added definition dbxref GOC:dph to GO:0060294
  * Added definition dbxref GOC:tb to GO:0060294
  * Copied GO:0060294 to GO:0060285 with type part_of
  * Copied GO:0060294 to GO:0007018 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060294
* Populated new object GO:0060295 (macro)
  * Changed name of GO:0060295 from "<new term>" to "regulation of cilium movement involved in ciliary motility"
  * Set definition of GO:0060295 to "Any process that modulates the rate frequency or extent of cilium movement involved in ciliary motility."
  * Added definition dbxref GOC:dph to GO:0060295
  * Added definition dbxref GOC:tb to GO:0060295
  * Copied GO:0060295 to GO:0032886 with type OBO_REL:is_a
  * Copied GO:0060295 to GO:0060294 with type regulates
  * Assigned namespace "biological_process" to GO:0060295
* Populated new object GO:0060296 (macro)
  * Changed name of GO:0060296 from "<new term>" to "regulation of cilium beat frequency involved in ciliary motility"
  * Set definition of GO:0060296 to "Any process that modulates the frequency of cilium beating involved in ciliary motility."
  * Added definition dbxref GOC:dph to GO:0060296
  * Added definition dbxref GOC:tb to GO:0060296
  * Copied GO:0060296 to GO:0060295 with type OBO_REL:is_a
  * Copied GO:0060296 to GO:0065008 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060296
* Populated new object GO:0060297 (macro)
  * Changed name of GO:0060297 from "<new term>" to "regulation of sarcomere organization"
  * Set definition of GO:0060297 to "Any process that modulates the rate, frequency or extent myofibril assambly by organization of muscle actomyosin into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs."
  * Added definition dbxref GOC:dph to GO:0060297
  * Added definition dbxref GOC:tb to GO:0060297
  * Copied GO:0060297 to GO:0045214 with type regulates
  * Copied GO:0060297 to GO:0032956 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060297
* Populated new object GO:0060298 (macro)
  * Changed name of GO:0060298 from "<new term>" to "positive regulation of sarcomere organization"
  * Set definition of GO:0060298 to "Any process that increases the rate, frequency or extent myofibril assambly by organization of muscle actomyosin into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs."
  * Added definition dbxref GOC:dph to GO:0060298
  * Added definition dbxref GOC:tb to GO:0060298
  * Copied GO:0060298 to GO:0051495 with type OBO_REL:is_a
  * Copied GO:0060298 to GO:0045214 with type positively_regulates
  * Copied GO:0060298 to GO:0060297 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060298
* Populated new object GO:0060299 (macro)
  * Changed name of GO:0060299 from "<new term>" to "negative regulation of sarcomere organization"
  * Set definition of GO:0060299 to "Any process that decreases the rate, frequency or extent myofibril assambly by organization of muscle actomyosin into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs."
  * Added definition dbxref GOC:dph to GO:0060299
  * Added definition dbxref GOC:tb to GO:0060299
  * Copied GO:0060299 to GO:0051494 with type OBO_REL:is_a
  * Copied GO:0060299 to GO:0045214 with type negatively_regulates
  * Copied GO:0060299 to GO:0060297 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060299
* Populated new object GO:0060300 (macro)
  * Changed name of GO:0060300 from "<new term>" to "regulation of cytokine activity"
  * Set definition of GO:0060300 to "Any process that modulates the rate, frequency or extent of the activity of a molecule that controls the survival, growth, differentiation and effector function of tissues and cells."
  * Added definition dbxref GOC:dph to GO:0060300
  * Added definition dbxref GOC:tb to GO:0060300
  * Copied GO:0060300 to GO:0065009 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060300
* Populated new object GO:0060301 (macro)
  * Changed name of GO:0060301 from "<new term>" to "positive regulation of cytokine activity"
  * Set definition of GO:0060301 to "Any process that increases the rate, frequency or extent of the activity of a molecule that controls the survival, growth, differentiation and effector function of tissues and cells."
  * Added definition dbxref GOC:dph to GO:0060301
  * Added definition dbxref GOC:tb to GO:0060301
  * Copied GO:0060301 to GO:0060300 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060301
* Populated new object GO:0060302 (macro)
  * Changed name of GO:0060302 from "<new term>" to "negative regulation of cytokine activity"
  * Set definition of GO:0060302 to "Any process that decreases the rate, frequency or extent of the activity of a molecule that controls the survival, growth, differentiation and effector function of tissues and cells."
  * Added definition dbxref GOC:dph to GO:0060302
  * Added definition dbxref GOC:tb to GO:0060302
  * Copied GO:0060302 to GO:0060300 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060302
* Deleted GO:0007600 --OBO_REL:is_a--> GO:0050877
* Copied GO:0007600 to GO:0050890 with type OBO_REL:is_a
* Deleted GO:0007611 --OBO_REL:is_a--> GO:0032501
* Copied GO:0007611 to GO:0050890 with type OBO_REL:is_a
* Deleted GO:0018994 --OBO_REL:is_a--> GO:0043232
* Deleted GO:0018994 --part_of--> GO:0045495
* Deleted GO:0018994 --OBO_REL:is_a--> GO:0044444
* Destroyed object GO:0018994
* Deleted GO:0031914 --OBO_REL:is_a--> GO:0050805
* Copied GO:0031914 to GO:0050804 with type OBO_REL:is_a
* Deleted GO:0031915 --OBO_REL:is_a--> GO:0050806
* Copied GO:0031915 to GO:0050804 with type OBO_REL:is_a
* Changed name of GO:0042463 from "non-eye photoreceptor cell development" to "ocellus photoreceptor cell development"
* Changed definition of GO:0042463 from "Development of non-eye photoreceptors, sensory cells that react to the presence of light, found outside of the eye." to "Development of photoreceptors, sensory cells that react to the presence of light, found in the ocellus."
* Changed name of GO:0042705 from "non-eye photoreceptor cell differentiation" to "ocellus photoreceptor cell differentiation"
* Changed definition of GO:0042705 from "The process whereby a relatively unspecialized cell acquires specialized features of a photoreceptor cell found outside of the eye." to "The process whereby a relatively unspecialized cell acquires specialized features of a photoreceptor cell found in the ocellus."
* Changed name of GO:0042707 from "non-eye photoreceptor cell fate commitment" to "ocellus photoreceptor cell fate commitment"
* Changed definition of GO:0042707 from "The process whereby the developmental fate of a cell becomes restricted such that it will develop into a non-eye photoreceptor cell. A photoreceptor cell is a cell that responds to incident electromagnetic radiation. Different classes of photoreceptor have different spectral sensitivities and express different photosensitive pigments." to "The process whereby the developmental fate of a cell becomes restricted such that it will develop into photoreceptor cell in the ocellus. A photoreceptor cell is a cell that responds to incident electromagnetic radiation. Different classes of photoreceptor have different spectral sensitivities and express different photosensitive pigments."
* added secondary id GO:0018994 to GO:0043186
* Changed definition of GO:0043186 from "A small protein and RNA containing electron dense organelle, not surrounded by a membrane, that is associated with germ nuclei in the gonad and localized to germ cells and their precursors throughout development." to "A small protein and RNA containing electron dense organelle, not surrounded by a membrane, that is associated with germ nuclei in the nematode gonad and localized to germ cells and their precursors throughout development."
* Added synonym "germline granule" to GO:0043186
* Changed synonym scope of GO:0043186 from "Related" to "Exact"
* Added synonym "nuage" to GO:0043186
* Changed synonym scope of GO:0043186 from "Related" to "Broad"
* Added synonym "polar granule" to GO:0043186
* Changed synonym scope of GO:0043186 from "Related" to "Exact"
* Deleted GO:0043186 --part_of--> GO:0045495
* Copied GO:0043186 to GO:0060293 with type part_of
* Changed definition of GO:0045214 from "The organization of the muscle actomyosin into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs." to "The myofibril assembly process by which the muscle actomyosin is organized into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs."