[Go-diff] GO update 08/29/2008

Fri Aug 29 21:30:46 PDT 2008

OBODIFF of gene_ontology_write.obo version 1.185 by 1.186

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034746
* Created object of type obo:TERM with id GO:0034747
* Created object of type obo:TERM with id GO:0034748
* Created object of type obo:TERM with id GO:0034749
* Created object of type obo:TERM with id GO:0034750
* Created object of type obo:TERM with id GO:0034751
* Created object of type obo:TERM with id GO:0034752
* Created object of type obo:TERM with id GO:0034753
* Populated new object GO:0034746 (macro)
  * Changed name of GO:0034746 from "<new term>" to "APC-IQGAP1-CLIP-170 complex"
  * Added comment "Note that the gene/protein name 'APC' should not be confused with the abbreviation for 'anaphase promoting complex'."
  * Set definition of GO:0034746 to "A protein complex that contains the tumor suppressor protein adenomatous polyposis coli (APC), the small GTPase Cdc42, and CLIP-170; may play a role in cytoskeleton organization and cell migration."
  * Added definition dbxref PMID:15572129 to GO:0034746
  * Copied GO:0034746 to GO:0044444 with type OBO_REL:is_a
  * Copied GO:0034746 to GO:0043234 with type OBO_REL:is_a
  * Copied GO:0034746 to GO:0031252 with type part_of
  * Assigned namespace "cellular_component" to GO:0034746
* Populated new object GO:0034747 (macro)
  * Changed name of GO:0034747 from "<new term>" to "Axin-APC-beta-catenin-GSK3B complex"
  * Added comment "Note that the gene/protein name 'APC' should not be confused with the abbreviation for 'anaphase promoting complex'."
  * Set definition of GO:0034747 to "A protein complex that contains the tumor suppressor protein adenomatous polyposis coli (APC), Axin-1, beta-catenin, and glycogen synthase kinase 3 beta. Formation of this complex leads to phosphorylation of beta-catenin and down-regulation of beta-catenin activity."
  * Added definition dbxref PMID:9601641 to GO:0034747
  * Copied GO:0034747 to GO:0043234 with type OBO_REL:is_a
  * Copied GO:0034747 to GO:0044444 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034747
* Populated new object GO:0034748 (macro)
  * Changed name of GO:0034748 from "<new term>" to "Par3-APC-KIF3A complex"
  * Added comment "Note that the gene/protein name 'APC' should not be confused with the abbreviation for 'anaphase promoting complex'."
  * Set definition of GO:0034748 to "A protein complex that contains Par3, the tumor suppressor protein adenomatous polyposis coli (APC), and the kinesin-related protein KIF3A; involved in establishing neuronal cell polarity."
  * Added definition dbxref PMID:15556865 to GO:0034748
  * Copied GO:0034748 to GO:0044444 with type OBO_REL:is_a
  * Copied GO:0034748 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034748
* Populated new object GO:0034749 (macro)
  * Changed name of GO:0034749 from "<new term>" to "Scrib-APC complex"
  * Added comment "Note that the gene/protein name 'APC' should not be confused with the abbreviation for 'anaphase promoting complex'."
  * Set definition of GO:0034749 to "A protein complex that contains the Scribble protein (a cell polarity determinant) and the tumor suppressor protein adenomatous polyposis coli (APC); may be involved in the control of cell proliferation."
  * Added definition dbxref PMID:16611247 to GO:0034749
  * Added synonym "hScrib-APC complex" to GO:0034749
  * Changed synonym scope of GO:0034749 from "Related" to "Narrow"
  * Copied GO:0034749 to GO:0043234 with type OBO_REL:is_a
  * Copied GO:0034749 to GO:0044444 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034749
* Populated new object GO:0034750 (macro)
  * Changed name of GO:0034750 from "<new term>" to "Scrib-APC-beta-catenin complex"
  * Added comment "Note that the gene/protein name 'APC' should not be confused with the abbreviation for 'anaphase promoting complex'."
  * Set definition of GO:0034750 to "A protein complex that contains the Scribble protein (a cell polarity determinant), the tumor suppressor protein adenomatous polyposis coli (APC), and beta-catenin; may be involved in the control of cell proliferation."
  * Added definition dbxref PMID:16611247 to GO:0034750
  * Added synonym "hScrib-APC-beta-catenin complex" to GO:0034750
  * Changed synonym scope of GO:0034750 from "Related" to "Narrow"
  * Copied GO:0034750 to GO:0044444 with type OBO_REL:is_a
  * Copied GO:0034750 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034750
* Populated new object GO:0034751 (macro)
  * Changed name of GO:0034751 from "<new term>" to "aryl hydrocarbon receptor complex"
  * Set definition of GO:0034751 to "A protein complex that acts as an aryl hydrocarbon (Ah) receptor. Cytosolic and nuclear Ah receptor complexes have different subunit composition, but both contain the ligand-binding subunit AhR."
  * Added definition dbxref GOC:mah to GO:0034751
  * Added definition dbxref PMID:7598497 to GO:0034751
  * Added synonym "AhR complex" to GO:0034751
  * Changed synonym scope of GO:0034751 from "Related" to "Exact"
  * Added synonym "AHRC" to GO:0034751
  * Changed synonym scope of GO:0034751 from "Related" to "Exact"
  * Copied GO:0034751 to GO:0043235 with type OBO_REL:is_a
  * Copied GO:0034751 to GO:0044424 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034751
* Populated new object GO:0034752 (macro)
  * Changed name of GO:0034752 from "<new term>" to "cytosolic aryl hydrocarbon receptor complex"
  * Set definition of GO:0034752 to "An aryl hydrocarbon receptor complex found in the cytosol, in which the ligand-binding subunit AhR is not bound to ligand; consists of AhR, two molecules of HSP90, the protein kinase c-Src, and the immunophilin XAP2/AIP."
  * Added definition dbxref PMID:7598497 to GO:0034752
  * Added definition dbxref PMID:8937476 to GO:0034752
  * Added definition dbxref PMID:9447995 to GO:0034752
  * Added synonym "9S-cytosolic aryl hydrocarbon (Ah) receptor non-ligand activated complex" to GO:0034752
  * Added synonym "cytosolic AhR complex" to GO:0034752
  * Changed synonym scope of GO:0034752 from "Related" to "Exact"
  * Added synonym "cytosolic AHRC" to GO:0034752
  * Changed synonym scope of GO:0034752 from "Related" to "Exact"
  * Copied GO:0034752 to GO:0044445 with type OBO_REL:is_a
  * Copied GO:0034752 to GO:0034751 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034752
* Populated new object GO:0034753 (macro)
  * Changed name of GO:0034753 from "<new term>" to "nuclear aryl hydrocarbon receptor complex"
  * Set definition of GO:0034753 to "An aryl hydrocarbon receptor (AhR) complex found in the nucleus; ; consists of ligand-bound AhR and the aryl hydrocarbon receptor nuclear translocator (ARNT)."
  * Added definition dbxref PMID:7598497 to GO:0034753
  * Added synonym "6S-nuclear aryl hydrocarbon (Ah) receptor ligand-activated complex" to GO:0034753
  * Added synonym "nuclear AhR complex" to GO:0034753
  * Changed synonym scope of GO:0034753 from "Related" to "Exact"
  * Added synonym "nuclear AHRC" to GO:0034753
  * Changed synonym scope of GO:0034753 from "Related" to "Exact"
  * Copied GO:0034753 to GO:0044428 with type OBO_REL:is_a
  * Copied GO:0034753 to GO:0034751 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034753
* Changed definition of GO:0005893 from "Complex that binds interleukin-2; comprises alpha, beta, and gamma subunits." to "A protein complex that binds interleukin-2; comprises alpha, beta, and gamma subunits."
* Changed definition of GO:0005894 from "Complex that binds interleukin-3; comprises an alpha and a beta subunit. The alpha chain is specific to the interleukin-3 receptor, whereas the beta chain is shared with the receptors for granulocyte-macrophage colony-stimulating factor and interleukin-5." to "A protein complex that binds interleukin-3; comprises an alpha and a beta subunit. The alpha chain is specific to the interleukin-3 receptor, whereas the beta chain is shared with the receptors for granulocyte-macrophage colony-stimulating factor and interleukin-5."
* Changed definition of GO:0005895 from "Complex that binds interleukin-3; comprises an alpha and a beta subunit. The alpha chain is specific to the interleukin-5 receptor, whereas the beta chain is shared with the receptors for granulocyte-macrophage colony-stimulating factor and interleukin-3." to "A protein complex that binds interleukin-3; comprises an alpha and a beta subunit. The alpha chain is specific to the interleukin-5 receptor, whereas the beta chain is shared with the receptors for granulocyte-macrophage colony-stimulating factor and interleukin-3."
* Changed definition of GO:0005896 from "A hexameric complex consisting of two molecules each of interleukin-6, interleukin-6 receptor alpha chain, and gp-130." to "A hexameric protein complex consisting of two molecules each of interleukin-6, interleukin-6 receptor alpha chain, and gp-130."
* Changed definition of GO:0005897 from "Complex that binds interleukin-9; comprises an alpha and a beta subunit. The alpha chain is specific to the interleukin-9 receptor, whereas the beta chain is shared with the receptors for several other interleukins." to "A protein complex that binds interleukin-9; comprises an alpha and a beta subunit. The alpha chain is specific to the interleukin-9 receptor, whereas the beta chain is shared with the receptors for several other interleukins."
* Changed definition of GO:0005898 from "A complex that binds interleukin-13; consists of two chains, interleukin-4 receptor alpha chain and interleukin-4 receptor alpha chain." to "A protein complex that binds interleukin-13; consists of two chains, interleukin-4 receptor alpha chain and interleukin-4 receptor alpha chain."
* Changed definition of GO:0016516 from "Complexes that bind interleukin-4; consist of alpha, beta, and gamma chains and exist in three forms, one containing extracellular transmembrane and cytoplasmic domains, one lacking the cytoplasmic domain and a third that is secreted." to "A protein complex that binds interleukin-4, consisting of alpha, beta, and gamma chains; exists in three forms, one containing extracellular transmembrane and cytoplasmic domains, one lacking the cytoplasmic domain and a third that is secreted."
* Changed definition of GO:0030876 from "Complex that binds interleukin-20; comprises an alpha and a beta subunit." to "A protein complex that binds interleukin-20; comprises an alpha and a beta subunit."
* Changed definition of GO:0042022 from "Complex that binds interleukin-12; comprises an alpha and a beta subunit." to "A protein complex that binds interleukin-12; comprises an alpha and a beta subunit."
* Changed definition of GO:0045092 from "Complex that binds interleukin-18; comprises an alpha and a beta subunit." to "A protein complex that binds interleukin-18; comprises an alpha and a beta subunit."
* Changed definition of GO:0045323 from "Complex that binds interleukin-1; comprises an alpha and a beta subunit." to "A protein complex that binds interleukin-1; comprises an alpha and a beta subunit."