[Go-diff] GO update 12/01/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Mon Dec 1 21:30:48 PST 2008 

OBODIFF of gene_ontology_write.obo version 1.335 by 1.337

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0060368
* Created object of type obo:TERM with id GO:0060369
* Created object of type obo:TERM with id GO:0060370
* Created object of type obo:TERM with id GO:0060371
* Created object of type obo:TERM with id GO:0060372
* Created object of type obo:TERM with id GO:0060373
* Created object of type obo:TERM with id GO:0060374
* Created object of type obo:TERM with id GO:0060375
* Created object of type obo:TERM with id GO:0060376
* Created object of type obo:TERM with id GO:0060377
* Populated new object GO:0060368 (macro)
  * Changed name of GO:0060368 from "<new term>" to "regulation of Fc receptor mediated stimulatory signaling pathway"
  * Set definition of GO:0060368 to "Any process that modulates the rate, frequency or extent of the Fc receptor mediated stimulatory signaling pathway. The Fc receptor mediated stimulatory signaling pathway is a series of molecular signals generated as a consequence of a the binding of the Fc portion of an immunoglobulin by an Fc receptor capable of activating or perpetuating an immune response. The Fc portion of an immunoglobulin is its C-terminal constant region."
  * Added definition dbxref GOC:dph to GO:0060368
  * Added definition dbxref GOC:tb to GO:0060368
  * Copied GO:0060368 to GO:0002682 with type OBO_REL:is_a
  * Copied GO:0060368 to GO:0002431 with type regulates
  * Assigned namespace "biological_process" to GO:0060368
* Populated new object GO:0060369 (macro)
  * Changed name of GO:0060369 from "<new term>" to "positive regulation of Fc receptor mediated stimulatory signaling pathway"
  * Set definition of GO:0060369 to "Any process that increases the rate, frequency or extent of the Fc receptor mediated stimulatory signaling pathway. The Fc receptor mediated stimulatory signaling pathway is a series of molecular signals generated as a consequence of a the binding of the Fc portion of an immunoglobulin by an Fc receptor capable of activating or perpetuating an immune response. The Fc portion of an immunoglobulin is its C-terminal constant region."
  * Added definition dbxref GOC:dph to GO:0060369
  * Added definition dbxref GOC:tb to GO:0060369
  * Copied GO:0060369 to GO:0002684 with type OBO_REL:is_a
  * Copied GO:0060369 to GO:0002431 with type positively_regulates
  * Copied GO:0060369 to GO:0060368 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060369
* Populated new object GO:0060370 (macro)
  * Changed name of GO:0060370 from "<new term>" to "susceptibility to T cell mediated cytotoxicity"
  * Set definition of GO:0060370 to "The process of causing a cell to become susceptible to T cell mediated cytotoxicity."
  * Added definition dbxref GOC:dph to GO:0060370
  * Added definition dbxref GOC:tb to GO:0060370
  * Copied GO:0060370 to GO:0001916 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060370
* Populated new object GO:0060371 (macro)
  * Changed name of GO:0060371 from "<new term>" to "regulation of atrial cardiomyocyte membrane depolarization"
  * Set definition of GO:0060371 to "Any process that modulates the establishment or extent of a membrane potential in the depolarizing direction away from the resting potential in an atrial cardiomyocyte."
  * Added definition dbxref GOC:dph to GO:0060371
  * Added definition dbxref GOC:tb to GO:0060371
  * Added synonym "atrial depolarization" to GO:0060371
  * Added general dbxref GOC:tb to synonym atrial depolarization of GO:0060371
  * Added general dbxref GOC:dph to synonym atrial depolarization of GO:0060371
  * Added synonym "electrocardiogram PR interval" to GO:0060371
  * Added general dbxref GOC:tb to synonym electrocardiogram PR interval of GO:0060371
  * Added general dbxref GOC:dph to synonym electrocardiogram PR interval of GO:0060371
  * Added synonym "regulation of atrial cardiac muscle cell depolarization" to GO:0060371
  * Added general dbxref GOC:tb to synonym regulation of atrial cardiac muscle cell depolarization of GO:0060371
  * Added general dbxref GOC:dph to synonym regulation of atrial cardiac muscle cell depolarization of GO:0060371
  * Changed synonym scope of GO:0060371 from "Related" to "Exact"
  * Copied GO:0060371 to GO:0051899 with type regulates
  * Copied GO:0060371 to GO:0055117 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060371
* Populated new object GO:0060372 (macro)
  * Changed name of GO:0060372 from "<new term>" to "regulation of atrial cardiomyocyte membrane repolarization"
  * Set definition of GO:0060372 to "Any process that modulates the establishment or extent of a membrane potential in the polarizing direction towards the resting potential in an atrial cardiomyocyte."
  * Added definition dbxref GOC:dph to GO:0060372
  * Added definition dbxref GOC:tb to GO:0060372
  * Added synonym "atrial repolarization" to GO:0060372
  * Added general dbxref GOC:tb to synonym atrial repolarization of GO:0060372
  * Added general dbxref GOC:dph to synonym atrial repolarization of GO:0060372
  * Added synonym "electrocardiogram QRS complex" to GO:0060372
  * Added general dbxref GOC:tb to synonym electrocardiogram QRS complex of GO:0060372
  * Added general dbxref GOC:dph to synonym electrocardiogram QRS complex of GO:0060372
  * Added synonym "regulation of atrial cardiac muscle cell repolarization" to GO:0060372
  * Added general dbxref GOC:tb to synonym regulation of atrial cardiac muscle cell repolarization of GO:0060372
  * Added general dbxref GOC:dph to synonym regulation of atrial cardiac muscle cell repolarization of GO:0060372
  * Changed synonym scope of GO:0060372 from "Related" to "Exact"
  * Copied GO:0060372 to GO:0055117 with type OBO_REL:is_a
  * Copied GO:0060372 to GO:0060306 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060372
* Populated new object GO:0060373 (macro)
  * Changed name of GO:0060373 from "<new term>" to "regulation of ventricular cardiomyocyte membrane depolarization"
  * Set definition of GO:0060373 to "Any process that modulates the establishment or extent of a membrane potential in the depolarizing direction away from the resting potential in a ventricular cardiomyocyte."
  * Added definition dbxref GOC:dph to GO:0060373
  * Added definition dbxref GOC:tb to GO:0060373
  * Added synonym "electrocardiogram QRS complex" to GO:0060373
  * Added general dbxref GOC:tb to synonym electrocardiogram QRS complex of GO:0060373
  * Added general dbxref GOC:dph to synonym electrocardiogram QRS complex of GO:0060373
  * Added synonym "regulation of ventricular cardiac muscle cell membrane depolarization" to GO:0060373
  * Added synonym "ventricular depolarization" to GO:0060373
  * Added general dbxref GOC:tb to synonym ventricular depolarization of GO:0060373
  * Added general dbxref GOC:dph to synonym ventricular depolarization of GO:0060373
  * Copied GO:0060373 to GO:0051899 with type regulates
  * Copied GO:0060373 to GO:0055117 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060373
* Populated new object GO:0060374 (macro)
  * Changed name of GO:0060374 from "<new term>" to "mast cell differentiation"
  * Set definition of GO:0060374 to "The process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of a mast cell. A mast cell is a cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation."
  * Added definition dbxref GOC:dph to GO:0060374
  * Added definition dbxref GOC:tb to GO:0060374
  * Copied GO:0060374 to GO:0002573 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060374
* Populated new object GO:0060375 (macro)
  * Changed name of GO:0060375 from "<new term>" to "regulation of mast cell differentiation"
  * Set definition of GO:0060375 to "Any process that modulates the rate, frequency or extent of mast cell differentiation, the process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of a mast cell. A mast cell is a cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation."
  * Added definition dbxref GOC:dph to GO:0060375
  * Added definition dbxref GOC:tb to GO:0060375
  * Copied GO:0060375 to GO:0060374 with type regulates
  * Copied GO:0060375 to GO:0002761 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060375
* Populated new object GO:0060376 (macro)
  * Changed name of GO:0060376 from "<new term>" to "positive regulation of mast cell differentiation"
  * Set definition of GO:0060376 to "Any process that increases the rate, frequency or extent of mast cell differentiation, the process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of a mast cell. A mast cell is a cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation."
  * Added definition dbxref GOC:dph to GO:0060376
  * Added definition dbxref GOC:tb to GO:0060376
  * Copied GO:0060376 to GO:0060375 with type OBO_REL:is_a
  * Copied GO:0060376 to GO:0002763 with type OBO_REL:is_a
  * Copied GO:0060376 to GO:0060374 with type positively_regulates
  * Assigned namespace "biological_process" to GO:0060376
* Populated new object GO:0060377 (macro)
  * Changed name of GO:0060377 from "<new term>" to "negative regulation of mast cell differentiation"
  * Set definition of GO:0060377 to "Any process that decreases the rate, frequency or extent of mast cell differentiation, the process whereby a relatively unspecialized myeloid precursor cell acquires the specialized features of a mast cell. A mast cell is a cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation."
  * Added definition dbxref GOC:dph to GO:0060377
  * Added definition dbxref GOC:tb to GO:0060377
  * Copied GO:0060377 to GO:0060374 with type negatively_regulates
  * Copied GO:0060377 to GO:0002762 with type OBO_REL:is_a
  * Copied GO:0060377 to GO:0060375 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060377
* Changed definition of GO:0000183 from "Repression of transcription of ribosomal DNA by the formation of heterochromatin." to "Repression of transcription of ribosomal DNA by altering the structure of chromatin."
* Changed definition of GO:0006348 from "Repression of transcription of telomeric DNA by the formation of heterochromatin." to "Repression of transcription of telomeric DNA by altering the structure of chromatin."
* Deleted GO:0006348 --OBO_REL:is_a--> GO:0031509
* Changed definition of GO:0016477 from "The orderly movement of cells from one site to another, often during the development of a multicellular organism." to "The orderly movement of cells from one site to another, often during the development of a multicellular organism or multicellular structure."
* Added definition dbxref GOC:pf to GO:0016477
* Changed definition of GO:0030466 from "Repression of transcription at silent mating-type loci by the formation of heterochromatin." to "Repression of transcription at silent mating-type loci by altering the structure of chromatin."
* Changed definition of GO:0030702 from "Repression of transcription of centromeric DNA by the formation of heterochromatin." to "Repression of transcription of centromeric DNA by altering the structure of chromatin."
* Deleted GO:0030702 --OBO_REL:is_a--> GO:0031508
* Changed name of GO:0034770 from "histone H3-K20 methylation" to "histone H4-K20 methylation"
* Changed definition of GO:0034770 from "The modification of histone H3 by addition of one or more methyl groups to lysine at position 20 of the histone." to "The modification of histone H4 by addition of one or more methyl groups to lysine at position 20 of the histone."
* Deleted synonym "histone H3 K20 methylation" from GO:0034770
* Deleted synonym "histone H3K20me" from GO:0034770
* Deleted synonym "histone lysine H3 K20 methylation" from GO:0034770
* Added synonym "histone H4 K20 methylation" to GO:0034770
* Changed synonym scope of GO:0034770 from "Related" to "Exact"
* Added synonym "histone H4K20me" to GO:0034770
* Changed synonym scope of GO:0034770 from "Related" to "Exact"
* Added synonym "histone lysine H4 K20 methylation" to GO:0034770
* Changed synonym scope of GO:0034770 from "Related" to "Exact"
* Changed name of GO:0034771 from "histone H3-K20 monomethylation" to "histone H4-K20 monomethylation"
* Changed definition of GO:0034771 from "The modification of histone H3 by addition of one methyl group to lysine at position 20 of the histone." to "The modification of histone H4 by addition of one methyl group to lysine at position 20 of the histone."
* Deleted synonym "histone H3 K20 monomethylation" from GO:0034771
* Deleted synonym "histone lysine H3 K20 monomethylation" from GO:0034771
* Added synonym "histone H4 K20 monomethylation" to GO:0034771
* Changed synonym scope of GO:0034771 from "Related" to "Exact"
* Added synonym "histone lysine H4 K20 monomethylation" to GO:0034771
* Changed synonym scope of GO:0034771 from "Related" to "Exact"
* Changed name of GO:0034772 from "histone H3-K20 dimethylation" to "histone H4-K20 dimethylation"
* Changed definition of GO:0034772 from "The modification of histone H3 by addition of two methyl groups to lysine at position 20 of the histone." to "The modification of histone H4 by addition of two methyl groups to lysine at position 20 of the histone."
* Deleted synonym "histone H3 K20 dimethylation" from GO:0034772
* Deleted synonym "histone lysine H3 K20 dimethylation" from GO:0034772
* Added synonym "histone H4 K20 dimethylation" to GO:0034772
* Changed synonym scope of GO:0034772 from "Related" to "Exact"
* Added synonym "histone lysine H4 K20 dimethylation" to GO:0034772
* Changed synonym scope of GO:0034772 from "Related" to "Exact"
* Added synonym "transendothelial leukocyte migration" to GO:0045123
* Added general dbxref GOC:rl to synonym transendothelial leukocyte migration of GO:0045123
* Changed synonym scope of GO:0045123 from "Related" to "Exact"
* Deleted general dbxref GOC:tb from synonym oocyte nucleus localization during oocyte axis determination of GO:0051663
* Deleted general dbxref GOC:dph from synonym oocyte nucleus localization during oocyte axis determination of GO:0051663
* Changed synonym scope of GO:0051663 from "Related" to "Exact"
* Added synonym "regulation of ventricular cardiac muscle cell repolarization" to GO:0060307
* Added general dbxref GOC:tb to synonym regulation of ventricular cardiac muscle cell repolarization of GO:0060307
* Added general dbxref GOC:dph to synonym regulation of ventricular cardiac muscle cell repolarization of GO:0060307
* Changed synonym scope of GO:0060307 from "Related" to "Exact"
* Added synonym "ventricular repolarization" to GO:0060307
* Added general dbxref GOC:tb to synonym ventricular repolarization of GO:0060307
* Added general dbxref GOC:dph to synonym ventricular repolarization of GO:0060307

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