[Go-diff] GO update 12/08/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Mon Dec 8 21:30:46 PST 2008 

OBODIFF of gene_ontology_write.obo version 1.342 by 1.345

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0060378
* Created object of type obo:TERM with id GO:0060379
* Created object of type obo:TERM with id GO:0060380
* Created object of type obo:TERM with id GO:0060381
* Created object of type obo:TERM with id GO:0060382
* Created object of type obo:TERM with id GO:0060383
* Created object of type obo:TERM with id GO:0080027
* Created object of type obo:TERM with id GO:0080028
* Populated new object GO:0060378 (macro)
  * Changed name of GO:0060378 from "<new term>" to "regulation of brood size"
  * Set definition of GO:0060378 to "Any process that modulates the extent of brood size. Brood size is the number of progeny that survive embryogenesis and are cared for at one time."
  * Added definition dbxref GOC:dph to GO:0060378
  * Added definition dbxref GOC:tb to GO:0060378
  * Copied GO:0060378 to GO:0065008 with type OBO_REL:is_a
  * Copied GO:0060378 to GO:0048609 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060378
* Populated new object GO:0060379 (macro)
  * Changed name of GO:0060379 from "<new term>" to "cardiac muscle cell myoblast differentiation"
  * Set definition of GO:0060379 to "The process whereby a relatively unspecialized cell acquires specialized features of a cardiac myoblast. A cardiac myoblast is a stem cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into cardiac muscle cells."
  * Added definition dbxref GOC:dph to GO:0060379
  * Added definition dbxref GOC:tb to GO:0060379
  * Added synonym "cardiac myoblast differentiation" to GO:0060379
  * Added general dbxref GOC:tb to synonym cardiac myoblast differentiation of GO:0060379
  * Added general dbxref GOC:dph to synonym cardiac myoblast differentiation of GO:0060379
  * Copied GO:0060379 to GO:0048863 with type OBO_REL:is_a
  * Copied GO:0060379 to GO:0007507 with type part_of
  * Assigned namespace "biological_process" to GO:0060379
* Populated new object GO:0060380 (macro)
  * Changed name of GO:0060380 from "<new term>" to "regulation of single-stranded telomeric DNA binding"
  * Set definition of GO:0060380 to "Any process that modulates the frequency, rate or extent of binding to single-stranded telomeric DNA."
  * Added definition dbxref GOC:dph to GO:0060380
  * Added definition dbxref GOC:tb to GO:0060380
  * Copied GO:0060380 to GO:0051101 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060380
* Populated new object GO:0060381 (macro)
  * Changed name of GO:0060381 from "<new term>" to "positive regulation of single-stranded telomeric DNA binding"
  * Set definition of GO:0060381 to "Any process that increases the frequency, rate or extent of single-stranded telomeric DNA binding."
  * Added definition dbxref GOC:dph to GO:0060381
  * Added definition dbxref GOC:tb to GO:0060381
  * Copied GO:0060381 to GO:0043388 with type OBO_REL:is_a
  * Copied GO:0060381 to GO:0060380 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060381
* Populated new object GO:0060382 (macro)
  * Changed name of GO:0060382 from "<new term>" to "regulation of DNA strand elongation"
  * Set definition of GO:0060382 to "Any process that modulates the rate, frequency or extent of DNA strand elongation. DNA strand elongation is the DNA metabolic process by which a DNA strand is synthesized by adding nucleotides to the 3' end of an existing DNA stand."
  * Added definition dbxref GOC:dph to GO:0060382
  * Added definition dbxref GOC:tb to GO:0060382
  * Copied GO:0060382 to GO:0022616 with type regulates
  * Copied GO:0060382 to GO:0051052 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060382
* Populated new object GO:0060383 (macro)
  * Changed name of GO:0060383 from "<new term>" to "positive regulation of DNA strand elongation"
  * Set definition of GO:0060383 to "Any process that increases the rate, frequency or extent of DNA strand elongation. DNA strand elongation is the DNA metabolic process by which a DNA strand is synthesized by adding nucleotides to the 3' end of an existing DNA stand."
  * Added definition dbxref GOC:dph to GO:0060383
  * Added definition dbxref GOC:tb to GO:0060383
  * Copied GO:0060383 to GO:0022616 with type positively_regulates
  * Copied GO:0060383 to GO:0051054 with type OBO_REL:is_a
  * Copied GO:0060383 to GO:0060382 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060383
* Populated new object GO:0080027 (macro)
  * Changed name of GO:0080027 from "<new term>" to "response to herbivore"
  * Set definition of GO:0080027 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a herbivore."
  * Added definition dbxref PMID:18987211 to GO:0080027
  * Copied GO:0080027 to GO:0051707 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0080027
* Populated new object GO:0080028 (macro)
  * Changed name of GO:0080028 from "<new term>" to "nitrile biosynthetic process"
  * Set definition of GO:0080028 to "The chemical reactions and pathways resulting in the formation of a nitrile, an organic compound containing trivalent nitrogen attached to one carbon atom."
  * Added definition dbxref PMID:18987211 to GO:0080028
  * Copied GO:0080028 to GO:0044271 with type OBO_REL:is_a
  * Copied GO:0080028 to GO:0050898 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0080028
* Deleted GO:0010636 --OBO_REL:is_a--> GO:0010638
* Deleted GO:0010637 --OBO_REL:is_a--> GO:0010639
* Copied GO:0010822 to GO:0010638 with type OBO_REL:is_a
* Copied GO:0010823 to GO:0010639 with type OBO_REL:is_a
* Copied GO:0010825 to GO:0010638 with type OBO_REL:is_a
* Copied GO:0010826 to GO:0010639 with type OBO_REL:is_a
* Deleted GO:0046599 --OBO_REL:is_a--> GO:0046605
* Copied GO:0046599 to GO:0010824 with type OBO_REL:is_a
* Deleted general dbxref GOC:tb from synonym oocyte nucleus localization during oocyte axis determination of GO:0051663
* Deleted general dbxref GOC:dph from synonym oocyte nucleus localization during oocyte axis determination of GO:0051663
* Changed synonym scope of GO:0051663 from "Related" to "Exact"
* Copied GO:0060368 to GO:0009966 with type OBO_REL:is_a
* Copied GO:0060369 to GO:0009967 with type OBO_REL:is_a
* Copied GO:0060371 to GO:0032844 with type OBO_REL:is_a
* Copied GO:0060371 to GO:0050794 with type OBO_REL:is_a
* Copied GO:0060373 to GO:0050794 with type OBO_REL:is_a
* Copied GO:0060373 to GO:0032844 with type OBO_REL:is_a
* Copied GO:0070132 to GO:0070129 with type OBO_REL:is_a

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