[Go-diff] GO update 12/11/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Thu Dec 11 21:30:48 PST 2008 

OBODIFF of gene_ontology_write.obo version 1.348 by 1.350

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0060384
* Created object of type obo:TERM with id GO:0060385
* Created object of type obo:TERM with id GO:0060386
* Created object of type obo:TERM with id GO:0060387
* Created object of type obo:TERM with id GO:0060388
* Created object of type obo:TERM with id GO:0070187
* Created object of type obo:TERM with id GO:0070188
* Created object of type obo:TERM with id GO:0070189
* Created object of type obo:TERM with id GO:0070190
* Created object of type obo:TERM with id GO:0070191
* Populated new object GO:0060384 (macro)
  * Changed name of GO:0060384 from "<new term>" to "innervation"
  * Set definition of GO:0060384 to "The process by which a nerve invades a tissue and makes functional synaptic connection within the tissue."
  * Added definition dbxref GOC:dph to GO:0060384
  * Added definition dbxref GOC:sart to GO:0060384
  * Copied GO:0060384 to GO:0032502 with type OBO_REL:is_a
  * Copied GO:0060384 to GO:0021675 with type part_of
  * Assigned namespace "biological_process" to GO:0060384
* Populated new object GO:0060385 (macro)
  * Changed name of GO:0060385 from "<new term>" to "axonogenesis involved in innervation"
  * Set definition of GO:0060385 to "The neurite development process that generates a long process of a neuron, as it invades a target tissue."
  * Added definition dbxref GOC:dph to GO:0060385
  * Added definition dbxref GOC:sart to GO:0060385
  * Copied GO:0060385 to GO:0060384 with type part_of
  * Copied GO:0060385 to GO:0007409 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060385
* Populated new object GO:0060386 (macro)
  * Changed name of GO:0060386 from "<new term>" to "synaptogenesis involved in innervation"
  * Set definition of GO:0060386 to "The biosynthesis of a synapse within a target tissue in which a nerve is invading."
  * Added definition dbxref GOC:dph to GO:0060386
  * Added definition dbxref GOC:sart to GO:0060386
  * Copied GO:0060386 to GO:0060384 with type part_of
  * Copied GO:0060386 to GO:0007416 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060386
* Populated new object GO:0060387 (macro)
  * Changed name of GO:0060387 from "<new term>" to "fertilization envelope"
  * Set definition of GO:0060387 to "A structure that lies outside the plasma membrane and surrounds the egg. The fertilization envelope forms from the vitelline membrane after fertilization as a result of cortical granule release."
  * Added definition dbxref GOC:dph to GO:0060387
  * Added definition dbxref ISBN:0878932437 to GO:0060387
  * Added synonym "fertilization membrane" to GO:0060387
  * Copied GO:0060387 to GO:0030312 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0060387
* Populated new object GO:0060388 (macro)
  * Changed name of GO:0060388 from "<new term>" to "vitelline envelope"
  * Set definition of GO:0060388 to "A glycoprotein-based structure that lies outside the plasma membrane and surrounds the egg before fertilization."
  * Added definition dbxref GOC:dph to GO:0060388
  * Added definition dbxref ISBN:0878932437 to GO:0060388
  * Added synonym "fertilization membrane" to GO:0060388
  * Copied GO:0060388 to GO:0030312 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0060388
* Populated new object GO:0070187 (macro)
  * Changed name of GO:0070187 from "<new term>" to "shelterin complex"
  * Set definition of GO:0070187 to "A nuclear telomere cap complex that is formed by the association of the shelterin protein (POT1 or a homolog thereof) and several other proteins with telomeric DNA. The complex contains TRF1, TRF2, POT1, RAP1, TIN2 and TPP1 in mammalian cells, and Pot1, Tpz1, Ccq1, Poz1, and Rap1 in Schizosaccharomyces."
  * Added definition dbxref GOC:mah to GO:0070187
  * Added definition dbxref GOC:vw to GO:0070187
  * Added definition dbxref PMID:18828880 to GO:0070187
  * Added synonym "Pot1-Tpz1 complex" to GO:0070187
  * Added general dbxref GOC:vw to synonym Pot1-Tpz1 complex of GO:0070187
  * Changed synonym scope of GO:0070187 from "Related" to "Exact"
  * Added synonym "telosome" to GO:0070187
  * Added general dbxref GOC:rl to synonym telosome of GO:0070187
  * Added general dbxref PMID:18828880 to synonym telosome of GO:0070187
  * Changed synonym scope of GO:0070187 from "Related" to "Exact"
  * Copied GO:0070187 to GO:0000783 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070187
* Populated new object GO:0070188 (macro)
  * Changed name of GO:0070188 from "<new term>" to "Stn1-Ten1 complex"
  * Set definition of GO:0070188 to "A nuclear telomere cap complex that is formed by the association of the Stn1 and Ten1 proteins with telomeric DNA; in some species a third protein is present."
  * Added definition dbxref GOC:mah to GO:0070188
  * Added definition dbxref GOC:vw to GO:0070188
  * Added definition dbxref PMID:17715303 to GO:0070188
  * Added definition dbxref PMID:19064932 to GO:0070188
  * Copied GO:0070188 to GO:0000783 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070188
* Populated new object GO:0070189 (macro)
  * Changed name of GO:0070189 from "<new term>" to "kynurenine metabolic process"
  * Set definition of GO:0070189 to "The chemical reactions and pathways involving kynurenine, the amino acid 3-(2-aminobenzoyl)-alanine."
  * Added definition dbxref ChEBI:28683 to GO:0070189
  * Added definition dbxref GOC:mah to GO:0070189
  * Added definition dbxref GOC:rph to GO:0070189
  * Added synonym "kynurenine metabolism" to GO:0070189
  * Changed synonym scope of GO:0070189 from "Related" to "Exact"
  * Copied GO:0070189 to GO:0019794 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070189
* Populated new object GO:0070190 (macro)
  * Changed name of GO:0070190 from "<new term>" to "inositol hexakisphosphate 1-kinase or 3-kinase activity"
  * Set definition of GO:0070190 to "Catalysis of the reaction: Catalysis of the reaction: ATP + 1D-myo-inositol hexakisphosphate = ADP + 1-diphospho-1D-myo-inositol (2,3,4,5,6)pentakisphosphate or ATP + 1D-myo-inositol hexakisphosphate = ADP + 3-diphospho-1D-myo-inositol (1,2,4,5,6)pentakisphosphate."
  * Added definition dbxref GOC:jp to GO:0070190
  * Added definition dbxref PMID:18981179 to GO:0070190
  * Copied GO:0070190 to GO:0000828 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070190
* Populated new object GO:0070191 (macro)
  * Changed name of GO:0070191 from "<new term>" to "methionine-R-sulfoxide reductase activity"
  * Set definition of GO:0070191 to "Catalysis of the reaction: Catalysis of the reaction: L-methionine R-oxide + thioredoxin = L-methionine + thioredoxin disulfide; can act on free oxidized methionine with specificity for the R enantiomer; does not act on oxidized methionine in peptide linkage. Thioredoxin disulfide is the oxidized form of thioredoxin."
  * Added definition dbxref GOC:mcc to GO:0070191
  * Added definition dbxref PMID:17535911 to GO:0070191
  * Added definition dbxref PMID:19049972 to GO:0070191
  * Added general dbxref EC:1.8.4.- to GO:0070191
  * Copied GO:0070191 to GO:0016671 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070191
* Deleted synonym "(protein) methionine-R-sulfoxide reductase activity" from GO:0000318
* Deleted synonym "shelterin complex" from GO:0000783
* Deleted synonym "telosome" from GO:0000783
* Changed name of GO:0005183 from "luteinizing hormone-releasing factor activity" to "gonadotropin hormone-releasing hormone activity"
* Set definition of GO:0005183 to "The action characteristic of gonadotropin hormone-releasing hormone (GnRH), any of a family of decapeptide amide hormones that are released by the eleased by the mammalian hypothalamus into the hypophyseal-portal circulation in response to neural and/or chemical stimuli. Upon receptor binding, GnRH causes the release of follicle-stimulating hormone and luteinizing hormone by the anterior pituitary."
* Added definition dbxref Oxford Dictionary of Biochemistry and Molecular Biology (ISBN:0198506732) to GO:0005183
* Added synonym "GnRH activity" to GO:0005183
* Added general dbxref ISBN:0198506732 to synonym GnRH activity of GO:0005183
* Changed synonym scope of GO:0005183 from "Related" to "Exact"
* Added synonym "LH/FSH-RF" to GO:0005183
* Added general dbxref ISBN:0198506732 to synonym LH/FSH-RF of GO:0005183
* Changed synonym scope of GO:0005183 from "Related" to "Exact"
* Added synonym "LHRH activity" to GO:0005183
* Added general dbxref ISBN:0198506732 to synonym LHRH activity of GO:0005183
* Changed synonym scope of GO:0005183 from "Related" to "Exact"
* Added synonym "luteinizing hormone-releasing factor activity" to GO:0005183
* Added general dbxref ISBN:0198506732 to synonym luteinizing hormone-releasing factor activity of GO:0005183
* Changed synonym scope of GO:0005183 from "Related" to "Exact"
* Added synonym "luteinizing hormone-releasing hormone activity" to GO:0005183
* Added general dbxref ISBN:0198506732 to synonym luteinizing hormone-releasing hormone activity of GO:0005183
* Changed synonym scope of GO:0005183 from "Related" to "Exact"
* Added synonym "luteinizing hormone/follicle-stimulating hormone releasing factor activity" to GO:0005183
* Added general dbxref ISBN:0198506732 to synonym luteinizing hormone/follicle-stimulating hormone releasing factor activity of GO:0005183
* Changed synonym scope of GO:0005183 from "Related" to "Exact"
* Set definition of GO:0008031 to "The action characteristic of eclosion hormone, a peptide hormone that, upon receptor binding, triggers the death of certain muscles and neurons during insect metamorphosis."
* Added definition dbxref GOC:mah to GO:0008031
* Added definition dbxref Oxford Dictionary of Biochemistry and Molecular Biology (ISBN:0198506732) to GO:0008031
* Set definition of GO:0008255 to "The action characteristic of ecdysis-triggering hormone, a peptide hormone that, upon receptor binding,  initiates pre-ecdysis and ecdysis (i.e. cuticle shedding) through direct action on the central nervous system."
* Added definition dbxref GOC:mah to GO:0008255
* Added definition dbxref PMID:9020043 to GO:0008255
* Set definition of GO:0008437 to "The action characteristic of thyrotropin-releasing hormone (TRH), a hormone released by the mammalian hypothalamus into the hypophyseal-portal circulation in response to neural and/or chemical stimuli. Upon receptor binding, TRH increases the secretion of thyroid-stimulating hormone by the anterior pituitary."
* Added definition dbxref Oxford Dictionary of Biochemistry and Molecular Biology (ISBN:0198506732) to GO:0008437
* Added synonym "thyrotropin-releasing hormone activity" to GO:0008437
* Added general dbxref ISBN:0198506732 to synonym thyrotropin-releasing hormone activity of GO:0008437
* Changed synonym scope of GO:0008437 from "Related" to "Exact"
* Added synonym "TRH activity" to GO:0008437
* Added general dbxref ISBN:0198506732 to synonym TRH activity of GO:0008437
* Changed synonym scope of GO:0008437 from "Related" to "Exact"
* Set definition of GO:0008613 to "The action characteristic of a diuretic hormone, any peptide hormone that, upon receptor binding, regulates water balance and fluid secretion."
* Added definition dbxref GOC:mah to GO:0008613
* Added definition dbxref InterPro:IPR003621 to GO:0008613
* Added definition dbxref PMID:8618894 to GO:0008613
* Changed name of GO:0017044 from "alpha-melanocyte stimulating hormone activity" to "melanocyte stimulating hormone activity"
* Set definition of GO:0017044 to "The action characteristic of melanocyte stimulating hormone, any of three peptide hormones that are produced by the intermediate lobe of the pituitary gland and, upon receptor binding, cause dispersal of melanosomes in melanophores of poikilothermic vertebrates."
* Added definition dbxref Oxford Dictionary of Biochemistry and Molecular Biology (ISBN:0198506732) to GO:0017044
* Added general dbxref ISBN:0198506732 to synonym alpha-melanophore stimulating hormone activity of GO:0017044
* Changed synonym scope of GO:0017044 from "Exact" to "Narrow"
* Added synonym "alpha-melanocyte stimulating hormone activity" to GO:0017044
* Added general dbxref ISBN:0198506732 to synonym alpha-melanocyte stimulating hormone activity of GO:0017044
* Changed synonym scope of GO:0017044 from "Related" to "Narrow"
* Changed definition of GO:0017045 from "The action characteristic of adrenocorticotropin-releasing hormone (CRH), any of a number of peptidic mammalian hypothalamic factors released into the hypophyseal-portal circulation in response to neural and/or chemical stimuli. Upon receptor binding, CRH increases the rate of adrenocorticotropin secretion by the anterior pituitary." to "The action characteristic of adrenocorticotropin-releasing hormone (CRH), any of a number of peptides released by the mammalian hypothalamus into the hypophyseal-portal circulation in response to neural and/or chemical stimuli. Upon receptor binding, CRH increases the rate of adrenocorticotropin secretion by the anterior pituitary."
* Set definition of GO:0018445 to "The action characteristic of prothoracicotrophic hormone, a peptide hormone that is secreted by the brain and, upon receptor binding, acts on the prothoracic gland to stimulate the release of ecdysone in insects."
* Added definition dbxref GOC:mah to GO:0018445
* Added definition dbxref PMID:3301403 to GO:0018445
* Set definition of GO:0030354 to "The action characteristic of melanin-concentrating hormone, a cyclic peptide hormone that, upon receptor binding, induces melanin aggregation in melanocytes, and is also involved in regulating food intake and energy balance in mammals."
* Added definition dbxref GOC:mah to GO:0030354
* Added definition dbxref PMID:11416225 to GO:0030354
* Added definition dbxref PMID:9792536 to GO:0030354
* Changed name of GO:0048188 from "COMPASS complex" to "Set1C/COMPASS complex"
* Added definition dbxref PMID:11742990 to GO:0048188
* Added definition dbxref PMID:12488447 to GO:0048188
* Deleted synonym "Set1 complex" from GO:0048188
* Added general dbxref GOC:vw to synonym Set1C of GO:0048188
* Changed synonym scope of GO:0048188 from "Narrow" to "Exact"
* Added synonym "COMPASS complex" to GO:0048188
* Added general dbxref GOC:vw to synonym COMPASS complex of GO:0048188
* Changed synonym scope of GO:0048188 from "Related" to "Exact"
* Deleted general dbxref GOC:tb from synonym oocyte nucleus localization during oocyte axis determination of GO:0051663
* Deleted general dbxref GOC:dph from synonym oocyte nucleus localization during oocyte axis determination of GO:0051663
* Changed synonym scope of GO:0051663 from "Related" to "Exact"

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