[Go-diff] GO update 12/12/2008

Fri Dec 12 21:30:48 PST 2008

OBODIFF of gene_ontology_write.obo version 1.350 by 1.352

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0070192
* Created object of type obo:TERM with id GO:0070193
* Created object of type obo:TERM with id GO:0070194
* Created object of type obo:TERM with id GO:0070195
* Created object of type obo:TERM with id GO:0070196
* Created object of type obo:TERM with id GO:0070197
* Populated new object GO:0070192 (macro)
  * Changed name of GO:0070192 from "<new term>" to "chromosome organization involved in meiosis"
  * Set definition of GO:0070192 to "A process of chromosome organization that is involved in meiosis."
  * Added definition dbxref GOC:mah to GO:0070192
  * Added synonym "meiotic chromosome organization" to GO:0070192
  * Added general dbxref GOC:mah to synonym meiotic chromosome organization of GO:0070192
  * Changed synonym scope of GO:0070192 from "Related" to "Exact"
  * Copied GO:0070192 to GO:0051276 with type OBO_REL:is_a
  * Copied GO:0070192 to GO:0022402 with type OBO_REL:is_a
  * Copied GO:0070192 to GO:0007126 with type part_of
  * Assigned namespace "biological_process" to GO:0070192
* Populated new object GO:0070193 (macro)
  * Changed name of GO:0070193 from "<new term>" to "synaptonemal complex organization"
  * Set definition of GO:0070193 to "A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a synaptonemal complex. A synaptonemal complex is a proteinaceous scaffold formed between homologous chromosomes during meiosis."
  * Added definition dbxref GOC:mah to GO:0070193
  * Copied GO:0070193 to GO:0016043 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070193
* Populated new object GO:0070194 (macro)
  * Changed name of GO:0070194 from "<new term>" to "synaptonemal complex disassembly"
  * Set definition of GO:0070194 to "The controlled breakdown of a synaptonemal complex."
  * Added definition dbxref GOC:mah to GO:0070194
  * Copied GO:0070194 to GO:0070193 with type OBO_REL:is_a
  * Copied GO:0070194 to GO:0022411 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070194
* Populated new object GO:0070195 (macro)
  * Changed name of GO:0070195 from "<new term>" to "growth hormone receptor complex"
  * Set definition of GO:0070195 to "A receptor complex that consists of two identical subunits and binds growth hormone."
  * Added definition dbxref GOC:mah to GO:0070195
  * Added definition dbxref GOC:vk to GO:0070195
  * Added definition dbxref PMID:11445442 to GO:0070195
  * Copied GO:0070195 to GO:0043235 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070195
* Populated new object GO:0070196 (macro)
  * Changed name of GO:0070196 from "<new term>" to "eukaryotic translation initiation factor 3 complex assembly"
  * Set definition of GO:0070196 to "The aggregation, arrangement and bonding together of a set of components to form the eukaryotic translation initiation factor 3 complex."
  * Added definition dbxref GOC:mah to GO:0070196
  * Added synonym "eIF-3 assembly" to GO:0070196
  * Added general dbxref GOC:mah to synonym eIF-3 assembly of GO:0070196
  * Changed synonym scope of GO:0070196 from "Related" to "Exact"
  * Added synonym "eIF3 assembly" to GO:0070196
  * Added general dbxref GOC:mah to synonym eIF3 assembly of GO:0070196
  * Changed synonym scope of GO:0070196 from "Related" to "Exact"
  * Copied GO:0070196 to GO:0043623 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070196
* Populated new object GO:0070197 (macro)
  * Changed name of GO:0070197 from "<new term>" to "attachment of telomeres to nuclear envelope"
  * Set definition of GO:0070197 to "The cell cycle process whereby physical connections are formed between telomeres and the nuclear envelope, facilitating bouquet formation."
  * Added definition dbxref GOC:jp to GO:0070197
  * Added definition dbxref PMID:18818742 to GO:0070197
  * Copied GO:0070197 to GO:0022402 with type OBO_REL:is_a
  * Copied GO:0070197 to GO:0045141 with type part_of
  * Assigned namespace "biological_process" to GO:0070197
* Copied GO:0000331 to GO:0031988 with type OBO_REL:is_a
* Deleted GO:0001309 --OBO_REL:is_a--> GO:0032200
* Deleted GO:0002116 --OBO_REL:is_a--> GO:0043234
* Copied GO:0002116 to GO:0043235 with type OBO_REL:is_a
* Added synonym "10-formyl-THF synthetase activity" to GO:0004329
* Added general dbxref GOC:vw to synonym 10-formyl-THF synthetase activity of GO:0004329
* Changed synonym scope of GO:0004329 from "Related" to "Exact"
* Added synonym "5,10-methenyl-THF cyclohydrolase activity" to GO:0004477
* Added general dbxref GOC:vw to synonym 5,10-methenyl-THF cyclohydrolase activity of GO:0004477
* Changed synonym scope of GO:0004477 from "Related" to "Exact"
* Added synonym "5,10-methylene-THF dehydrogenase activity" to GO:0004486
* Added general dbxref GOC:vw to synonym 5,10-methylene-THF dehydrogenase activity of GO:0004486
* Changed synonym scope of GO:0004486 from "Related" to "Exact"
* Deleted GO:0007129 --OBO_REL:is_a--> GO:0022402
* Deleted GO:0007129 --OBO_REL:is_a--> GO:0051276
* Copied GO:0007129 to GO:0070192 with type OBO_REL:is_a
* Deleted GO:0007130 --OBO_REL:is_a--> GO:0022402
* Deleted GO:0007130 --OBO_REL:is_a--> GO:0051276
* Copied GO:0007130 to GO:0070193 with type OBO_REL:is_a
* Copied GO:0007130 to GO:0070192 with type OBO_REL:is_a
* Changed definition of GO:0030324 from "The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the oesophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax." to "The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the esophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax."
* Deleted GO:0042478 --OBO_REL:is_a--> GO:0060284
* Changed definition of GO:0043235 from "Any protein group composed of two or more subunits, which may or may not be identical, which undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function." to "Any protein complex that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function."
* Deleted GO:0045664 --OBO_REL:is_a--> GO:0045595
* Deleted general dbxref EC:6.3.5.8 from GO:0046820
* Added general dbxref EC:2.6.1.85 to GO:0046820
* Deleted general dbxref EC:6.3.5.8 from synonym ADC synthase activity of GO:0046820
* Added general dbxref EC:2.6.1.85 to synonym ADC synthase activity of GO:0046820
* Deleted general dbxref EC:6.3.5.8 from synonym chorismate:L-glutamine amido-ligase activity of GO:0046820
* Added general dbxref EC:2.6.1.85 to synonym chorismate:L-glutamine amido-ligase activity of GO:0046820
* Deleted general dbxref EC:6.3.5.8 from synonym PabB activity of GO:0046820
* Added general dbxref EC:2.6.1.85 to synonym PabB activity of GO:0046820
* Deleted GO:0046820 --OBO_REL:is_a--> GO:0016884
* Copied GO:0046820 to GO:0008483 with type OBO_REL:is_a
* Deleted general dbxref GOC:tb from synonym oocyte nucleus localization during oocyte axis determination of GO:0051663
* Deleted general dbxref GOC:dph from synonym oocyte nucleus localization during oocyte axis determination of GO:0051663
* Changed synonym scope of GO:0051663 from "Related" to "Exact"
* Copied GO:0070177 to GO:0016192 with type OBO_REL:is_a