[Go-diff] GO update 12/19/2008

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.360 by 1.363

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0060390
* Created object of type obo:TERM with id GO:0060391
* Created object of type obo:TERM with id GO:0060392
* Created object of type obo:TERM with id GO:0060393
* Created object of type obo:TERM with id GO:0060394
* Created object of type obo:TERM with id GO:0060395
* Created object of type obo:TERM with id GO:0070215
* Created object of type obo:TERM with id GO:0070216
* Populated new object GO:0060390 (macro)
  * Changed name of GO:0060390 from "<new term>" to "regulation of SMAD protein nuclear translocation"
  * Set definition of GO:0060390 to "Any process that modulates the rate, frequency or extent of SMAD protein nuclear translocation. SMAD protein nuclear translocation is the vectorial transfer of a SMAD proteins from the cytoplasm into the nucleus, through the nuclear pore. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways."
  * Added definition dbxref GOC:dph to GO:0060390
  * Added definition dbxref GOC:tb to GO:0060390
  * Copied GO:0060390 to GO:0033158 with type OBO_REL:is_a
  * Copied GO:0060390 to GO:0007184 with type regulates
  * Assigned namespace "biological_process" to GO:0060390
* Populated new object GO:0060391 (macro)
  * Changed name of GO:0060391 from "<new term>" to "positive regulation of SMAD protein nuclear translocation"
  * Set definition of GO:0060391 to "Any process that increases the rate, frequency or extent of SMAD protein nuclear translocation. SMAD protein nuclear translocation is the vectorial transfer of a SMAD proteins from the cytoplasm into the nucleus, through the nuclear pore. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways."
  * Added definition dbxref GOC:dph to GO:0060391
  * Added definition dbxref GOC:tb to GO:0060391
  * Copied GO:0060391 to GO:0033160 with type OBO_REL:is_a
  * Copied GO:0060391 to GO:0007184 with type positively_regulates
  * Copied GO:0060391 to GO:0060390 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060391
* Populated new object GO:0060392 (macro)
  * Changed name of GO:0060392 from "<new term>" to "negative regulation of SMAD protein nuclear translocation"
  * Set definition of GO:0060392 to "Any process that decreases the rate, frequency or extent of SMAD protein nuclear translocation. SMAD protein nuclear translocation is the vectorial transfer of a SMAD proteins from the cytoplasm into the nucleus, through the nuclear pore. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways."
  * Added definition dbxref GOC:dph to GO:0060392
  * Added definition dbxref GOC:tb to GO:0060392
  * Copied GO:0060392 to GO:0060390 with type OBO_REL:is_a
  * Copied GO:0060392 to GO:0007184 with type negatively_regulates
  * Copied GO:0060392 to GO:0033159 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060392
* Populated new object GO:0060393 (macro)
  * Changed name of GO:0060393 from "<new term>" to "regulation of pathway-restricted SMAD protein phosphorylation"
  * Set definition of GO:0060393 to "Any process that modulates the rate, frequency or extent of pathway-restricted SMAD protein phosphorylation. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways."
  * Added definition dbxref GOC:dph to GO:0060393
  * Added definition dbxref GOC:tb to GO:0060393
  * Copied GO:0060393 to GO:0060389 with type regulates
  * Copied GO:0060393 to GO:0001932 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060393
* Populated new object GO:0060394 (macro)
  * Changed name of GO:0060394 from "<new term>" to "negative regulation of pathway-restricted SMAD protein phosphorylation"
  * Set definition of GO:0060394 to "Any process that decreases the rate, frequency or extent of SMAD protein nuclear translocation. SMAD protein nuclear translocation is the vectorial transfer of a SMAD proteins from the cytoplasm into the nucleus, through the nuclear pore. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways."
  * Added definition dbxref GOC:dph to GO:0060394
  * Added definition dbxref GOC:tb to GO:0060394
  * Copied GO:0060394 to GO:0060389 with type negatively_regulates
  * Copied GO:0060394 to GO:0001933 with type OBO_REL:is_a
  * Copied GO:0060394 to GO:0060393 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060394
* Populated new object GO:0060395 (macro)
  * Changed name of GO:0060395 from "<new term>" to "SMAD protein signal transduction"
  * Set definition of GO:0060395 to "x."
  * Added definition dbxref GOC:dph to GO:0060395
  * Added definition dbxref GOC:tb to GO:0060395
  * Copied GO:0060395 to GO:0007179 with type part_of
  * Copied GO:0060395 to GO:0007165 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060395
* Populated new object GO:0070215 (macro)
  * Changed name of GO:0070215 from "<new term>" to "MDM2 binding"
  * Set definition of GO:0070215 to "Interacting selectively with any isoform of the MDM2 protein, a negative regulator of p53."
  * Added definition dbxref GOC:mah to GO:0070215
  * Added definition dbxref GOC:nln to GO:0070215
  * Copied GO:0070215 to GO:0005515 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070215
* Populated new object GO:0070216 (macro)
  * Changed name of GO:0070216 from "<new term>" to "MDM4 binding"
  * Set definition of GO:0070216 to "Interacting selectively with any isoform of the MDM4 protein, a negative regulator of p53."
  * Added definition dbxref GOC:mah to GO:0070216
  * Added definition dbxref GOC:nln to GO:0070216
  * Added synonym "MDMX binding" to GO:0070216
  * Added general dbxref GOC:nln to synonym MDMX binding of GO:0070216
  * Changed synonym scope of GO:0070216 from "Related" to "Exact"
  * Copied GO:0070216 to GO:0005515 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070216
* Changed name of GO:0000491 from "snoRNP assembly" to "small nucleolar ribonucleoprotein complex assembly"
* Deleted synonym "small nucleolar ribonucleoprotein complex assembly" from GO:0000491
* Added synonym "snoRNP assembly" to GO:0000491
* Changed synonym scope of GO:0000491 from "Related" to "Exact"
* Changed definition of GO:0005904 from "The phospholipid membrane surrounding a cell that separates the cell from its external environment, excluding intergral and associated proteins." to "The phospholipid membrane surrounding a cell that separates the cell from its external environment, excluding integral and associated proteins."
* Added synonym "SMAD protein import into nucleus, translocation" to GO:0007184
* Added general dbxref GOC:tb to synonym SMAD protein import into nucleus, translocation of GO:0007184
* Added general dbxref GOC:dph to synonym SMAD protein import into nucleus, translocation of GO:0007184
* Changed synonym scope of GO:0007184 from "Related" to "Exact"
* Changed name of GO:0032221 from "Clr6 histone deacetylase complex II'" to "Rpd3/Clr6 histone deacetylase complex II'"
* Added synonym "Clr6 histone deacetylase complex II'" to GO:0032221
* Added general dbxref GOC:vw to synonym Clr6 histone deacetylase complex II' of GO:0032221
* Changed synonym scope of GO:0032221 from "Related" to "Exact"
* Changed name of GO:0033698 from "Clr6 histone deacetylase complex I/I'" to "Rpd3/Clr6 histone deacetylase complex I/I'"
* Added synonym "Clr6 histone deacetylase complex I/I'" to GO:0033698
* Added general dbxref GOC:vw to synonym Clr6 histone deacetylase complex I/I' of GO:0033698
* Added general dbxref GOC:rb to synonym Clr6 histone deacetylase complex I/I' of GO:0033698
* Changed synonym scope of GO:0033698 from "Related" to "Exact"