[Go-diff] GO update 12/23/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Tue Dec 23 21:30:48 PST 2008 

OBODIFF of gene_ontology_write.obo version 1.365 by 1.367

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0060396
* Created object of type obo:TERM with id GO:0060397
* Created object of type obo:TERM with id GO:0060398
* Created object of type obo:TERM with id GO:0060399
* Created object of type obo:TERM with id GO:0060400
* Created object of type obo:TERM with id GO:0060401
* Created object of type obo:TERM with id GO:0060402
* Created object of type obo:TERM with id GO:0060403
* Created object of type obo:TERM with id GO:0060404
* Populated new object GO:0060396 (macro)
  * Changed name of GO:0060396 from "<new term>" to "growth hormone receptor signaling pathway"
  * Set definition of GO:0060396 to "The series of molecular signals generated as a consequence of growth hormone receptor binding to its physiological ligand."
  * Added definition dbxref GOC:dph to GO:0060396
  * Added definition dbxref PMID:11445442 to GO:0060396
  * Added synonym "GH receptor signaling pathway" to GO:0060396
  * Added general dbxref GOC:dph to synonym GH receptor signaling pathway of GO:0060396
  * Added synonym "growth hormone receptor signalling pathway" to GO:0060396
  * Added general dbxref GOC:dph to synonym growth hormone receptor signalling pathway of GO:0060396
  * Changed synonym scope of GO:0060396 from "Related" to "Exact"
  * Copied GO:0060396 to GO:0007169 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060396
* Populated new object GO:0060397 (macro)
  * Changed name of GO:0060397 from "<new term>" to "JAK-STAT cascade involved in growth hormone signaling pathway"
  * Set definition of GO:0060397 to "The process by which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of physiological ligands to the growth hormone receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes."
  * Added definition dbxref GOC:dph to GO:0060397
  * Added definition dbxref PMID:11445442 to GO:0060397
  * Added synonym "JAK-STAT cascade involved in growth hormone signalling pathway" to GO:0060397
  * Added general dbxref GOC:dph to synonym JAK-STAT cascade involved in growth hormone signalling pathway of GO:0060397
  * Changed synonym scope of GO:0060397 from "Related" to "Exact"
  * Copied GO:0060397 to GO:0007259 with type OBO_REL:is_a
  * Copied GO:0060397 to GO:0060396 with type part_of
  * Assigned namespace "biological_process" to GO:0060397
* Populated new object GO:0060398 (macro)
  * Changed name of GO:0060398 from "<new term>" to "regulation of growth hormone receptor signaling pathway"
  * Set definition of GO:0060398 to "Any process that modulates the rate, frequency or extent of the growth hormone receptor signaling pathway. The growth hormone receptor signaling pathway is the series of molecular signals generated as a consequence of growth hormone receptor binding to its physiological ligand."
  * Added definition dbxref GOC:dph to GO:0060398
  * Copied GO:0060398 to GO:0060396 with type regulates
  * Copied GO:0060398 to GO:0009966 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060398
* Populated new object GO:0060399 (macro)
  * Changed name of GO:0060399 from "<new term>" to "positive regulation of growth hormone receptor signaling pathway"
  * Set definition of GO:0060399 to "Any process that increases the rate, frequency or extent of the growth hormone receptor signaling pathway. The growth hormone receptor signaling pathway is the series of molecular signals generated as a consequence of growth hormone receptor binding to its physiological ligand."
  * Added definition dbxref GOC:dph to GO:0060399
  * Copied GO:0060399 to GO:0060396 with type positively_regulates
  * Copied GO:0060399 to GO:0009967 with type OBO_REL:is_a
  * Copied GO:0060399 to GO:0060398 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060399
* Populated new object GO:0060400 (macro)
  * Changed name of GO:0060400 from "<new term>" to "negative regulation of growth hormone receptor signaling pathway"
  * Set definition of GO:0060400 to "Any process that decreases the rate, frequency or extent of the growth hormone receptor signaling pathway. The growth hormone receptor signaling pathway is the series of molecular signals generated as a consequence of growth hormone receptor binding to its physiological ligand."
  * Added definition dbxref GOC:dph to GO:0060400
  * Copied GO:0060400 to GO:0009968 with type OBO_REL:is_a
  * Copied GO:0060400 to GO:0060398 with type OBO_REL:is_a
  * Copied GO:0060400 to GO:0060396 with type negatively_regulates
  * Assigned namespace "biological_process" to GO:0060400
* Populated new object GO:0060401 (macro)
  * Changed name of GO:0060401 from "<new term>" to "cytosolic calcium ion transport"
  * Set definition of GO:0060401 to "The directed movement of calcium ions (Ca2+) into, out of or within the cytosol."
  * Added definition dbxref GOC:dph to GO:0060401
  * Added definition dbxref GOC:tb to GO:0060401
  * Copied GO:0060401 to GO:0006816 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060401
* Populated new object GO:0060402 (macro)
  * Changed name of GO:0060402 from "<new term>" to "calcium ion transport into cytosol"
  * Set definition of GO:0060402 to "The directed movement of calcium ions (Ca2+) into the cytosol."
  * Added definition dbxref GOC:dph to GO:0060402
  * Added definition dbxref GOC:tb to GO:0060402
  * Copied GO:0060402 to GO:0060401 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060402
* Populated new object GO:0060403 (macro)
  * Changed name of GO:0060403 from "<new term>" to "post-mating oviposition"
  * Set definition of GO:0060403 to "The deposition of eggs, either fertilized or not, upon a surface or into a medium, following mating."
  * Added definition dbxref GOC:dph to GO:0060403
  * Added definition dbxref GOC:tb to GO:0060403
  * Copied GO:0060403 to GO:0018991 with type OBO_REL:is_a
  * Copied GO:0060403 to GO:0045297 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060403
* Populated new object GO:0060404 (macro)
  * Changed name of GO:0060404 from "<new term>" to "axonemal microtubule depolymerization"
  * Set definition of GO:0060404 to "The removal of tubulin heterodimers from one or both ends of an axonemal microtubule. An axonemal microtubule is a microtubule in the axoneme of a cilium or flagellum; an axoneme contains nine modified doublet microtubules surrounding a pair of single microtubules."
  * Added definition dbxref GOC:dph to GO:0060404
  * Added definition dbxref GOC:tb to GO:0060404
  * Copied GO:0060404 to GO:0007019 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060404
* Changed name of GO:0007027 from "negative regulation of microtubule depolymerization in axoneme" to "negative regulation of axonemal microtubule depolymerization"
* Deleted synonym "negative regulation of axonemal microtubule depolymerization" from GO:0007027
* Added synonym "negative regulation of microtubule depolymerization in axoneme" to GO:0007027
* Added general dbxref GOC:dph to synonym negative regulation of microtubule depolymerization in axoneme of GO:0007027
* Copied GO:0007027 to GO:0060404 with type negatively_regulates
* Added synonym "negative regulation of transcription during mitosis" to GO:0007068
* Added general dbxref GOC:tb to synonym negative regulation of transcription during mitosis of GO:0007068
* Added general dbxref GOC:dph to synonym negative regulation of transcription during mitosis of GO:0007068
* Changed synonym scope of GO:0007068 from "Related" to "Exact"
* Added synonym "negative regulation of transcription from RNA polymerase I promoter during mitosis" to GO:0007069
* Added general dbxref GOC:tb to synonym negative regulation of transcription from RNA polymerase I promoter during mitosis of GO:0007069
* Added general dbxref GOC:dph to synonym negative regulation of transcription from RNA polymerase I promoter during mitosis of GO:0007069
* Changed synonym scope of GO:0007069 from "Related" to "Exact"
* Added synonym "negative regulation of transcription from RNA polymerase II promoter during mitosis" to GO:0007070
* Added general dbxref GOC:tb to synonym negative regulation of transcription from RNA polymerase II promoter during mitosis of GO:0007070
* Added general dbxref GOC:dph to synonym negative regulation of transcription from RNA polymerase II promoter during mitosis of GO:0007070
* Changed synonym scope of GO:0007070 from "Related" to "Exact"
* Added synonym "negative regulation of transcription from RNA polymerase III promoter during mitosis" to GO:0007071
* Added general dbxref GOC:tb to synonym negative regulation of transcription from RNA polymerase III promoter during mitosis of GO:0007071
* Added general dbxref GOC:dph to synonym negative regulation of transcription from RNA polymerase III promoter during mitosis of GO:0007071
* Changed synonym scope of GO:0007071 from "Related" to "Exact"
* Deleted GO:0007621 --OBO_REL:is_a--> GO:0048521
* Deleted GO:0007621 --negatively_regulates--> GO:0060181
* Deleted GO:0007621 --OBO_REL:is_a--> GO:0051241
* Copied GO:0010522 to GO:0060402 with type regulates
* Added synonym "regulation of transcription from RNA polymerase II promoter during meiosis" to GO:0010672
* Added general dbxref GOC:tb to synonym regulation of transcription from RNA polymerase II promoter during meiosis of GO:0010672
* Added general dbxref GOC:dph to synonym regulation of transcription from RNA polymerase II promoter during meiosis of GO:0010672
* Changed synonym scope of GO:0010672 from "Related" to "Exact"
* Copied GO:0010672 to GO:0051037 with type OBO_REL:is_a
* Added synonym "positive regulation of transcription from RNA polymerase II promoter during meiosis" to GO:0010673
* Added general dbxref GOC:tb to synonym positive regulation of transcription from RNA polymerase II promoter during meiosis of GO:0010673
* Added general dbxref GOC:dph to synonym positive regulation of transcription from RNA polymerase II promoter during meiosis of GO:0010673
* Changed synonym scope of GO:0010673 from "Related" to "Exact"
* Copied GO:0010673 to GO:0051039 with type OBO_REL:is_a
* Added synonym "negative regulation of transcription from RNA polymerase II promoter during meiosis" to GO:0010674
* Added general dbxref GOC:tb to synonym negative regulation of transcription from RNA polymerase II promoter during meiosis of GO:0010674
* Added general dbxref GOC:dph to synonym negative regulation of transcription from RNA polymerase II promoter during meiosis of GO:0010674
* Changed synonym scope of GO:0010674 from "Related" to "Exact"
* Copied GO:0010674 to GO:0051038 with type OBO_REL:is_a
* Deleted GO:0032538 --part_of--> GO:0018991
* Added synonym "regulation of transcription during mitosis" to GO:0045896
* Changed synonym scope of GO:0045896 from "Related" to "Exact"
* Added synonym "positive regulation of transcription during mitosis" to GO:0045897
* Added general dbxref GOC:tb to synonym positive regulation of transcription during mitosis of GO:0045897
* Added general dbxref GOC:dph to synonym positive regulation of transcription during mitosis of GO:0045897
* Changed synonym scope of GO:0045897 from "Related" to "Exact"
* added secondary id GO:0060181 to GO:0045924
* Added definition dbxref GOC:dph to GO:0045924
* Added definition dbxref GOC:tb to GO:0045924
* Added synonym "female receptivity" to GO:0045924
* Added general dbxref GOC:tb to synonym female receptivity of GO:0045924
* Added general dbxref GOC:dph to synonym female receptivity of GO:0045924
* Deleted GO:0045924 --OBO_REL:is_a--> GO:0050795
* Deleted GO:0045924 --OBO_REL:is_a--> GO:0051239
* Deleted GO:0045924 --OBO_REL:is_a--> GO:0043900
* Deleted GO:0045924 --regulates--> GO:0060181
* Copied GO:0045924 to GO:0065008 with type OBO_REL:is_a
* Copied GO:0045924 to GO:0060180 with type OBO_REL:is_a
* Deleted GO:0045925 --OBO_REL:is_a--> GO:0048520
* Deleted GO:0045925 --OBO_REL:is_a--> GO:0051240
* Deleted GO:0045925 --positively_regulates--> GO:0060181
* Deleted GO:0046008 --part_of--> GO:0045297
* Copied GO:0046008 to GO:0045297 with type OBO_REL:is_a
* Deleted synonym "regulation of transcription from Pol I promoter, mitotic" from GO:0046017
* Added synonym "regulation of transcription from Pol I promoter during mitosis" to GO:0046017
* Added general dbxref GOC:tb to synonym regulation of transcription from Pol I promoter during mitosis of GO:0046017
* Added general dbxref GOC:dph to synonym regulation of transcription from Pol I promoter during mitosis of GO:0046017
* Changed synonym scope of GO:0046017 from "Related" to "Exact"
* Added synonym "regulation of transcription from RNA polymerase I promoter during mitosis" to GO:0046017
* Added general dbxref GOC:tb to synonym regulation of transcription from RNA polymerase I promoter during mitosis of GO:0046017
* Added general dbxref GOC:dph to synonym regulation of transcription from RNA polymerase I promoter during mitosis of GO:0046017
* Changed synonym scope of GO:0046017 from "Related" to "Exact"
* Added synonym "positive regulation of transcription from RNA polymerase I promoter during mitosis" to GO:0046018
* Added general dbxref GOC:tb to synonym positive regulation of transcription from RNA polymerase I promoter during mitosis of GO:0046018
* Added general dbxref GOC:dph to synonym positive regulation of transcription from RNA polymerase I promoter during mitosis of GO:0046018
* Changed synonym scope of GO:0046018 from "Related" to "Exact"
* Added synonym "regulation of transcription from RNA polymerase II promoter during mitosis" to GO:0046021
* Added general dbxref GOC:tb to synonym regulation of transcription from RNA polymerase II promoter during mitosis of GO:0046021
* Added general dbxref GOC:dph to synonym regulation of transcription from RNA polymerase II promoter during mitosis of GO:0046021
* Changed synonym scope of GO:0046021 from "Related" to "Exact"
* Added synonym "positive regulation of transcription from RNA polymerase II promoter during mitosis" to GO:0046022
* Added general dbxref GOC:tb to synonym positive regulation of transcription from RNA polymerase II promoter during mitosis of GO:0046022
* Added general dbxref GOC:dph to synonym positive regulation of transcription from RNA polymerase II promoter during mitosis of GO:0046022
* Changed synonym scope of GO:0046022 from "Related" to "Exact"
* Added synonym "regulation of transcription from RNA polymerase III promoter during mitosis" to GO:0046023
* Added general dbxref GOC:tb to synonym regulation of transcription from RNA polymerase III promoter during mitosis of GO:0046023
* Added general dbxref GOC:dph to synonym regulation of transcription from RNA polymerase III promoter during mitosis of GO:0046023
* Changed synonym scope of GO:0046023 from "Related" to "Exact"
* Added synonym "positive regulation of transcription from RNA polymerase III promoter during mitosis" to GO:0046024
* Added general dbxref GOC:tb to synonym positive regulation of transcription from RNA polymerase III promoter during mitosis of GO:0046024
* Added general dbxref GOC:dph to synonym positive regulation of transcription from RNA polymerase III promoter during mitosis of GO:0046024
* Changed synonym scope of GO:0046024 from "Related" to "Exact"
* Changed name of GO:0048042 from "regulation of oviposition, post-mating" to "regulation of post-mating oviposition"
* Changed definition of GO:0048042 from "Any process that modulates the frequency, rate or extent of egg-laying, following mating." to "Any process that modulates the frequency, rate or extent of the deposition of eggs, either fertilized or not, upon a surface or into a medium, following mating."
* Added definition dbxref GOC:dph to GO:0048042
* Added definition dbxref GOC:tb to GO:0048042
* Added synonym "regulation of oviposition, post-mating" to GO:0048042
* Added general dbxref GOC:tb to synonym regulation of oviposition, post-mating of GO:0048042
* Added general dbxref GOC:dph to synonym regulation of oviposition, post-mating of GO:0048042
* Changed synonym scope of GO:0048042 from "Related" to "Exact"
* Deleted GO:0048042 --part_of--> GO:0045297
* Copied GO:0048042 to GO:0060403 with type regulates
* Added synonym "regulation of transcription during meiosis" to GO:0051037
* Added general dbxref GOC:tb to synonym regulation of transcription during meiosis of GO:0051037
* Added general dbxref GOC:dph to synonym regulation of transcription during meiosis of GO:0051037
* Changed synonym scope of GO:0051037 from "Related" to "Exact"
* Added synonym "negative regulation of transcription during meiosis" to GO:0051038
* Added general dbxref GOC:tb to synonym negative regulation of transcription during meiosis of GO:0051038
* Added general dbxref GOC:dph to synonym negative regulation of transcription during meiosis of GO:0051038
* Changed synonym scope of GO:0051038 from "Related" to "Exact"
* Added synonym "positive regulation of transcription during meiosis" to GO:0051039
* Added general dbxref GOC:tb to synonym positive regulation of transcription during meiosis of GO:0051039
* Added general dbxref GOC:dph to synonym positive regulation of transcription during meiosis of GO:0051039
* Changed synonym scope of GO:0051039 from "Related" to "Exact"
* Deleted GO:0060181 --OBO_REL:is_a--> GO:0060180
* Deleted GO:0007621 --negatively_regulates--> GO:0060181
* Deleted GO:0045925 --positively_regulates--> GO:0060181
* Deleted GO:0045924 --regulates--> GO:0060181
* Destroyed object GO:0060181

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