[go-diff] GO update 02/04/2008

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_edit.obo version 5.678 by 5.679

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034236
* Created object of type obo:TERM with id GO:0034237
* Created object of type obo:TERM with id GO:0034238
* Created object of type obo:TERM with id GO:0034239
* Created object of type obo:TERM with id GO:0034240
* Created object of type obo:TERM with id GO:0034241
* Created object of type obo:TERM with id GO:0034242
* Created object of type obo:TERM with id GO:0034243
* Created object of type obo:TERM with id GO:0034244
* Populated new object GO:0034236 (macro)
  * Changed name of GO:0034236 from "<new term>" to "protein kinase A catalytic subunit binding"
  * Set definition of GO:0034236 to "Interacting selectively with one or both of the catalytic subunits of protein kinase A."
  * Added definition dbxref GOC:mah to GO:0034236
  * Added synonym "PKA catalytic subunit binding" to GO:0034236
  * Changed synonym scope of GO:0034236 from "Related" to "Exact"
  * Copied GO:0034236 to GO:0051018 with type OBO_REL:is_a
  * Copied GO:0034236 to GO:0019901 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034236
* Populated new object GO:0034237 (macro)
  * Changed name of GO:0034237 from "<new term>" to "protein kinase A regulatory subunit binding"
  * Set definition of GO:0034237 to "Interacting selectively with one or both of the regulatory subunits of protein kinase A."
  * Added definition dbxref GOC:mah to GO:0034237
  * Added synonym "PKA regulatory subunit binding" to GO:0034237
  * Changed synonym scope of GO:0034237 from "Related" to "Exact"
  * Added synonym "protein kinase A anchoring activity" to GO:0034237
  * Copied GO:0034237 to GO:0051018 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034237
* Populated new object GO:0034238 (macro)
  * Changed name of GO:0034238 from "<new term>" to "macrophage fusion"
  * Set definition of GO:0034238 to "The binding and fusion of a macrophage to one or more other cells to form a multinucleated cell."
  * Added definition dbxref GOC:sl to GO:0034238
  * Copied GO:0034238 to GO:0000768 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034238
* Populated new object GO:0034239 (macro)
  * Changed name of GO:0034239 from "<new term>" to "regulation of macrophage fusion"
  * Set definition of GO:0034239 to "Any process that modulates the frequency, rate or extent of macrophage fusion."
  * Added definition dbxref GOC:mah to GO:0034239
  * Copied GO:0034239 to GO:0060142 with type OBO_REL:is_a
  * Copied GO:0034239 to GO:0034238 with type part_of
  * Assigned namespace "biological_process" to GO:0034239
* Populated new object GO:0034240 (macro)
  * Changed name of GO:0034240 from "<new term>" to "negative regulation of macrophage fusion"
  * Set definition of GO:0034240 to "Any process that stops, prevents, or decreases the frequency, rate or extent of macrophage fusion."
  * Added definition dbxref GOC:mah to GO:0034240
  * Copied GO:0034240 to GO:0034242 with type OBO_REL:is_a
  * Copied GO:0034240 to GO:0034239 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034240
* Populated new object GO:0034241 (macro)
  * Changed name of GO:0034241 from "<new term>" to "positive regulation of macrophage fusion"
  * Set definition of GO:0034241 to "Any process that activates or increases the frequency, rate or extent of macrophage fusion."
  * Added definition dbxref GOC:mah to GO:0034241
  * Copied GO:0034241 to GO:0034239 with type OBO_REL:is_a
  * Copied GO:0034241 to GO:0060143 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034241
* Populated new object GO:0034242 (macro)
  * Changed name of GO:0034242 from "<new term>" to "negative regulation of syncytium formation by plasma membrane fusion"
  * Set definition of GO:0034242 to "Any process that decreases the frequency, rate or extent of the formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells."
  * Added definition dbxref GOC:mah to GO:0034242
  * Copied GO:0034242 to GO:0060142 with type OBO_REL:is_a
  * Copied GO:0034242 to GO:0051130 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034242
* Populated new object GO:0034243 (macro)
  * Changed name of GO:0034243 from "<new term>" to "regulation of RNA elongation from RNA polymerase II promoter"
  * Set definition of GO:0034243 to "Any process that modulates the frequency, rate or extent of RNA elongation, the extension of an RNA molecule after transcription initiation by the addition of ribonucleotides, catalyzed by RNA polymerase II."
  * Added definition dbxref GOC:mah to GO:0034243
  * Added synonym "regulation of transcription elongation from RNA polymerase II promoter" to GO:0034243
  * Changed synonym scope of GO:0034243 from "Related" to "Broad"
  * Copied GO:0034243 to GO:0006368 with type part_of
  * Copied GO:0034243 to GO:0032784 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034243
* Populated new object GO:0034244 (macro)
  * Changed name of GO:0034244 from "<new term>" to "negative regulation of RNA elongation from RNA polymerase II promoter"
  * Set definition of GO:0034244 to "Any process that stops, prevents, or reduces the frequency, rate or extent of RNA elongation, the extension of an RNA molecule after transcription initiation by the addition of ribonucleotides, catalyzed by RNA polymerase II."
  * Added definition dbxref GOC:mah to GO:0034244
  * Added synonym "negative regulation of transcription elongation from RNA polymerase II promoter" to GO:0034244
  * Changed synonym scope of GO:0034244 from "Related" to "Broad"
  * Copied GO:0034244 to GO:0032785 with type OBO_REL:is_a
  * Copied GO:0034244 to GO:0034243 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034244
* Set definition of GO:0003078 to "Any process that modulates the frequency, rate, or extent of natriuresis, the process of renal sodium excretion."
* Added definition dbxref GOC:mah to GO:0003078
* Set definition of GO:0003080 to "Any process that stops, prevents, or decreases the frequency, rate, or extent of natriuresis, the process of renal sodium excretion."
* Added definition dbxref GOC:mah to GO:0003080
* Set definition of GO:0003106 to "The process by which angiotensin directly decreases the rate of glomerular filtration in the kidney. Glomerular filtration is the processs whereby blood is filtered by the glomerulus into the renal tubule."
* Added definition dbxref GOC:mah to GO:0003106
* Set definition of GO:0003996 to "Catalysis of the reaction: an acyl + ATP + CoASH = AMP + diphosphate + acyl-CoA."
* Added definition dbxref GOC:mah to GO:0003996
* Deleted GO:0005991 --OBO_REL:is_a--> GO:0006112
* Deleted GO:0031566 --part_of--> GO:0031565
* Copied GO:0032968 to GO:0034243 with type OBO_REL:is_a
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"
* Deleted synonym "regulation of cell wall chitin formation" from GO:0034233
* Added synonym "regulation of cell wall chitin degradation" to GO:0034233
* Changed synonym scope of GO:0034233 from "Related" to "Exact"
* Deleted synonym "regulation of spore wall chitin formation" from GO:0034234
* Added synonym "regulation of spore wall chitin degradation" to GO:0034234
* Changed synonym scope of GO:0034234 from "Related" to "Exact"
* Added comment "Note that this term is a direct child of 'protein binding ; GO:0005515' because it encompasses binding to either the catalytic or regulatory subunit of protein kinase A, and the latter does not have kinase activity."
* Changed definition of GO:0051018 from "Interacting selectively with protein kinase A." to "Interacting selectively with any subunit of protein kinase A."
* Deleted GO:0051018 --OBO_REL:is_a--> GO:0019901
* Copied GO:0051018 to GO:0005515 with type OBO_REL:is_a