[go-diff] GO update 02/07/2008

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_edit.obo version 5.680 by 5.681

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034245
* Created object of type obo:TERM with id GO:0034246
* Created object of type obo:TERM with id GO:0034247
* Populated new object GO:0034245 (macro)
  * Changed name of GO:0034245 from "<new term>" to "mitochondrial DNA-directed RNA polymerase complex"
  * Set definition of GO:0034245 to "A DNA-directed RNA polymerase complex located in the mitochondrion. Mitochondrial RNA polymerase is composed of two subunits, a catalytic core, which resembles the enzymes from bacteriophage T7 and T3, and a
specificity factor required for promoter recognition, which is similar to members of the eubacterial sigma factor family. In S. cerevisiae, these are encoded by the nuclear genes RPO41 and MTF1 and the specificity factor, required for promoter recognition and initiation, is not present in the elongating form."
  * Added definition dbxref GOC:krc to GO:0034245
  * Added definition dbxref GOC:mah to GO:0034245
  * Added definition dbxref PMID:7929382 to GO:0034245
  * Added synonym "itochondrial RNA polymerase holoenzyme complex" to GO:0034245
  * Added synonym "mitochondrial RNA polymerase complex" to GO:0034245
  * Changed synonym scope of GO:0034245 from "Related" to "Broad"
  * Copied GO:0034245 to GO:0044429 with type OBO_REL:is_a
  * Copied GO:0034245 to GO:0000428 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034245
* Populated new object GO:0034246 (macro)
  * Changed name of GO:0034246 from "<new term>" to "mitochondrial transcription initiation factor activity"
  * Set definition of GO:0034246 to "A transcription factor activity that confers promoter specificity upon mitochondrial RNA polymerase, in a manner analogous to eubacterial sigma factors."
  * Added definition dbxref GOC:mah to GO:0034246
  * Added synonym "mitochondrial polymerase transcription factor activity" to GO:0034246
  * Changed synonym scope of GO:0034246 from "Related" to "Exact"
  * Added synonym "mitochondrial transcription factor activity" to GO:0034246
  * Copied GO:0034246 to GO:0016986 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034246
* Populated new object GO:0034247 (macro)
  * Changed name of GO:0034247 from "<new term>" to "snoRNA splicing"
  * Set definition of GO:0034247 to "The process of removing sections of a primary snoRNA transcript to remove sequences not present in the mature form of the snoRNA and joining the remaining sections to form the mature form of the snoRNA."
  * Added definition dbxref GOC:mah to GO:0034247
  * Copied GO:0034247 to GO:0008380 with type OBO_REL:is_a
  * Copied GO:0034247 to GO:0043144 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034247
* Changed synonym scope of GO:0003916 from "Exact" to "Related"
* Deleted GO:0005760 --OBO_REL:is_a--> GO:0043234
* Copied GO:0005760 to GO:0042575 with type OBO_REL:is_a
* Added synonym "sigma transcription factor" to GO:0016987
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"
* Added synonym "isotype switch recombination" to GO:0045190
* Changed synonym scope of GO:0045190 from "Related" to "Exact"
* Added synonym "regulation of isotype switch recombination" to GO:0045191
* Changed synonym scope of GO:0045191 from "Related" to "Exact"
* Added synonym "negative regulation of isotype switch recombination" to GO:0045829
* Changed synonym scope of GO:0045829 from "Related" to "Exact"
* Added synonym "positive regulation of isotype switch recombination" to GO:0045830
* Changed synonym scope of GO:0045830 from "Related" to "Exact"
* Added synonym "isotype switch recombination to IgE isotypes" to GO:0048289
* Changed synonym scope of GO:0048289 from "Related" to "Exact"
* Added synonym "isotype switch recombination to IgA isotypes" to GO:0048290
* Changed synonym scope of GO:0048290 from "Related" to "Exact"
* Added synonym "isotype switch recombination to IgG isotypes" to GO:0048291
* Changed synonym scope of GO:0048291 from "Related" to "Exact"
* Added synonym "isotype switch recombination to IgD isotypes" to GO:0048292
* Changed synonym scope of GO:0048292 from "Related" to "Exact"
* Added synonym "regulation of isotype switch recombination to IgE isotypes" to GO:0048293
* Changed synonym scope of GO:0048293 from "Related" to "Exact"
* Added synonym "negative regulation of isotype switch recombination to IgE isotypes" to GO:0048294
* Changed synonym scope of GO:0048294 from "Related" to "Exact"
* Added synonym "positive regulation of isotype switch recombination to IgE isotypes" to GO:0048295
* Changed synonym scope of GO:0048295 from "Related" to "Exact"
* Added synonym "regulation of isotype switch recombination to IgA isotypes" to GO:0048296
* Changed synonym scope of GO:0048296 from "Related" to "Exact"
* Added synonym "negative regulation of isotype switch recombination to IgA isotypes" to GO:0048297
* Changed synonym scope of GO:0048297 from "Related" to "Exact"
* Added synonym "positive regulation of isotype switch recombination to IgA isotypes" to GO:0048298
* Changed synonym scope of GO:0048298 from "Related" to "Exact"
* Added synonym "regulation of isotype switch recombination to IgD isotypes" to GO:0048299
* Changed synonym scope of GO:0048299 from "Related" to "Exact"
* Added synonym "negative regulation of isotype switch recombination to IgD isotypes" to GO:0048300
* Changed synonym scope of GO:0048300 from "Related" to "Exact"
* Added synonym "positive regulation of isotype switch recombination to IgD isotypes" to GO:0048301
* Changed synonym scope of GO:0048301 from "Related" to "Exact"
* Added synonym "regulation of isotype switch recombination to IgG isotypes" to GO:0048302
* Changed synonym scope of GO:0048302 from "Related" to "Exact"
* Added synonym "negative regulation of isotype switch recombination to IgG isotypes" to GO:0048303
* Changed synonym scope of GO:0048303 from "Related" to "Exact"
* Added synonym "positive regulation of isotype switch recombination to IgG isotypes" to GO:0048304
* Changed synonym scope of GO:0048304 from "Related" to "Exact"