[go-diff] GO update 02/08/2008

Fri Feb 8 21:30:44 PST 2008

OBODIFF of gene_ontology_edit.obo version 5.681 by 5.684

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010531
* Created object of type obo:TERM with id GO:0010532
* Created object of type obo:TERM with id GO:0010533
* Created object of type obo:TERM with id GO:0010534
* Created object of type obo:TERM with id GO:0010535
* Created object of type obo:TERM with id GO:0010536
* Created object of type obo:TERM with id GO:0010537
* Created object of type obo:TERM with id GO:0010538
* Created object of type obo:TERM with id GO:0010539
* Populated new object GO:0010531 (macro)
  * Changed name of GO:0010531 from "<new term>" to "activation of JAK1 protein"
  * Set definition of GO:0010531 to "The process of introducing a phosphate group to a tyrosine residue of a JAK1 (Janus Activated Kinase 1) protein, thereby activating it."
  * Added definition dbxref GOC:dph to GO:0010531
  * Added definition dbxref GOC:tb to GO:0010531
  * Added definition dbxref PMID:9135582 to GO:0010531
  * Added synonym "tyrosine phosphorylation of JAK1 protein" to GO:0010531
  * Added general dbxref GOC:tb to synonym tyrosine phosphorylation of JAK1 protein of GO:0010531
  * Added general dbxref GOC:dph to synonym tyrosine phosphorylation of JAK1 protein of GO:0010531
  * Copied GO:0010531 to GO:0042976 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010531
* Populated new object GO:0010532 (macro)
  * Changed name of GO:0010532 from "<new term>" to "regulation of activation of JAK1 protein"
  * Set definition of GO:0010532 to "Any process that modulates the frequency or rate of activation of JAK1 protein. The activation of JAK1 protein is the process of introducing a phosphate group to a tyrosine residue of a JAK1 (Janus Activated Kinase 1) protein, thereby activating it."
  * Added definition dbxref GOC:dph to GO:0010532
  * Added definition dbxref GOC:tb to GO:0010532
  * Added definition dbxref PMID:9135582 to GO:0010532
  * Added synonym "regulation of tyrosine phosphorylation of JAK1 protein" to GO:0010532
  * Added general dbxref GOC:tb to synonym regulation of tyrosine phosphorylation of JAK1 protein of GO:0010532
  * Added general dbxref GOC:dph to synonym regulation of tyrosine phosphorylation of JAK1 protein of GO:0010532
  * Copied GO:0010532 to GO:0010531 with type part_of
  * Copied GO:0010532 to GO:0010533 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010532
* Populated new object GO:0010533 (macro)
  * Changed name of GO:0010533 from "<new term>" to "regulation of activation of JAK protein"
  * Set definition of GO:0010533 to "Any process that modulates the frequency or rate of activation of JAK protein. The activation of JAK protein is the process of introducing a phosphate group to a tyrosine residue of a JAK (Janus Activated Kinase) protein, thereby activating it."
  * Added definition dbxref GOC:dph to GO:0010533
  * Added definition dbxref GOC:tb to GO:0010533
  * Added definition dbxref PMID:9135582 to GO:0010533
  * Added general dbxref PMID:17190829 to GO:0010533
  * Added synonym "regulation of tyrosine phosphorylation of JAK protein" to GO:0010533
  * Added general dbxref GOC:tb to synonym regulation of tyrosine phosphorylation of JAK protein of GO:0010533
  * Added general dbxref GOC:dph to synonym regulation of tyrosine phosphorylation of JAK protein of GO:0010533
  * Copied GO:0010533 to GO:0050730 with type OBO_REL:is_a
  * Copied GO:0010533 to GO:0042976 with type part_of
  * Assigned namespace "biological_process" to GO:0010533
* Populated new object GO:0010534 (macro)
  * Changed name of GO:0010534 from "<new term>" to "regulation of activation of JAK2 protein"
  * Set definition of GO:0010534 to "Any process that modulates the frequency or rate of activation of JAK2 protein. The activation of JAK2 protein is the process of introducing a phosphate group to a tyrosine residue of a JAK2 (Janus Activated Kinase 2) protein, thereby activating it."
  * Added definition dbxref GOC:dph to GO:0010534
  * Added definition dbxref GOC:tb to GO:0010534
  * Added definition dbxref PMID:9135582 to GO:0010534
  * Added synonym "regulation of tyrosine phosphorylation of JAK2 protein" to GO:0010534
  * Added general dbxref GOC:tb to synonym regulation of tyrosine phosphorylation of JAK2 protein of GO:0010534
  * Added general dbxref GOC:dph to synonym regulation of tyrosine phosphorylation of JAK2 protein of GO:0010534
  * Copied GO:0010534 to GO:0010533 with type OBO_REL:is_a
  * Copied GO:0010534 to GO:0042977 with type part_of
  * Assigned namespace "biological_process" to GO:0010534
* Populated new object GO:0010535 (macro)
  * Changed name of GO:0010535 from "<new term>" to "positive regulation of activation of JAK2 protein"
  * Set definition of GO:0010535 to "Any process that increase the frequency or rate of activation of JAK2 protein. The activation of JAK2 protein is the process of introducing a phosphate group to a tyrosine residue of a JAK2 (Janus Activated Kinase 2) protein, thereby activating it."
  * Added definition dbxref GOC:dph to GO:0010535
  * Added definition dbxref GOC:tb to GO:0010535
  * Added definition dbxref PMID:9135582 to GO:0010535
  * Added synonym "positive regulation of tyrosine phosphorylation of JAK2 protein" to GO:0010535
  * Added general dbxref GOC:tb to synonym positive regulation of tyrosine phosphorylation of JAK2 protein of GO:0010535
  * Added general dbxref GOC:dph to synonym positive regulation of tyrosine phosphorylation of JAK2 protein of GO:0010535
  * Copied GO:0010535 to GO:0050731 with type OBO_REL:is_a
  * Copied GO:0010535 to GO:0010536 with type OBO_REL:is_a
  * Copied GO:0010535 to GO:0010534 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010535
* Populated new object GO:0010536 (macro)
  * Changed name of GO:0010536 from "<new term>" to "positive regulation of activation of JAK protein"
  * Set definition of GO:0010536 to "Any process that increases the frequency or rate of activation of JAK protein. The activation of JAK protein is the process of introducing a phosphate group to a tyrosine residue of a JAK (Janus Activated Kinase) protein, thereby activating it."
  * Added definition dbxref GOC:dph to GO:0010536
  * Added definition dbxref GOC:tb to GO:0010536
  * Added definition dbxref PMID:9135582 to GO:0010536
  * Added synonym "positive regulation of tyrosine phosphorylation of JAK protein" to GO:0010536
  * Added general dbxref GOC:tb to synonym positive regulation of tyrosine phosphorylation of JAK protein of GO:0010536
  * Added general dbxref GOC:dph to synonym positive regulation of tyrosine phosphorylation of JAK protein of GO:0010536
  * Copied GO:0010536 to GO:0010533 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010536
* Populated new object GO:0010537 (macro)
  * Changed name of GO:0010537 from "<new term>" to "positive regulation of activation of JAK1 protein"
  * Set definition of GO:0010537 to "Any process that increases the frequency or rate of activation of JAK1 protein. The activation of JAK1 protein is the process of introducing a phosphate group to a tyrosine residue of a JAK1 (Janus Activated Kinase 1) protein, thereby activating it."
  * Added definition dbxref GOC:dph to GO:0010537
  * Added definition dbxref GOC:tb to GO:0010537
  * Added definition dbxref PMID:9135582 to GO:0010537
  * Added synonym "positive regulation of tyrosine phosphorylation of JAK1 protein" to GO:0010537
  * Added general dbxref GOC:tb to synonym positive regulation of tyrosine phosphorylation of JAK1 protein of GO:0010537
  * Added general dbxref GOC:dph to synonym positive regulation of tyrosine phosphorylation of JAK1 protein of GO:0010537
  * Copied GO:0010537 to GO:0010532 with type OBO_REL:is_a
  * Copied GO:0010537 to GO:0010536 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010537
* Populated new object GO:0010538 (macro)
  * Changed name of GO:0010538 from "<new term>" to "Hsp27 protein regulator activity"
  * Set definition of GO:0010538 to "Modulates the activity of the Hsp27 molecular chaperone."
  * Added definition dbxref GOC:dph to GO:0010538
  * Added definition dbxref GOC:tb to GO:0010538
  * Added definition dbxref PMID:11546764 to GO:0010538
  * Copied GO:0010538 to GO:0030188 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010538
* Populated new object GO:0010539 (macro)
  * Changed name of GO:0010539 from "<new term>" to "Hsp27 protein inhibitor activity"
  * Set definition of GO:0010539 to "Stops, prevents or reduces the activity of the Hsp27 molecular chaperone."
  * Added definition dbxref GOC:dph to GO:0010539
  * Added definition dbxref GOC:tb to GO:0010539
  * Copied GO:0010539 to GO:0010538 with type OBO_REL:is_a
  * Copied GO:0010539 to GO:0030190 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010539
* Changed definition of GO:0001865 from "The process whereby a relatively unspecialized hemopoietic stem cell acquires the specialized features of a NK T cell." to "The process whereby a precursor cell type acquires the specialized features of a NK T cell."
* Changed definition of GO:0002244 from "The process whereby a unspecialized hemopoietic stem cell acquires the specialized features of a hemopoietic progenitor cell, a class of cell types including myeloid progenitor cells and lymphoid progenitor cells." to "The process whereby precursor cell type acquires the specialized features of a hemopoietic progenitor cell, a class of cell types including myeloid progenitor cells and lymphoid progenitor cells."
* Changed definition of GO:0002299 from "The process whereby a relatively unspecialized hemopoietic stem cell acquires the specialized features of an alpha-beta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways." to "The process whereby a precursor cell type acquires the specialized features of an alpha-beta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways."
* Changed definition of GO:0002300 from "The process whereby a relatively unspecialized hemopoietic stem cell acquires the specialized features of a CD8-positive, alpha-beta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways." to "The process whereby a precursor cell type acquires the specialized features of a CD8-positive, alpha-beta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways."
* Changed definition of GO:0002301 from "The process whereby a relatively unspecialized hemopoietic stem cell acquires the specialized features of a CD4-positive, alpha-beta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways." to "The process whereby a precursor cell type acquires the specialized features of a CD4-positive, alpha-beta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways."
* Changed definition of GO:0002304 from "The process whereby a relatively unspecialized hemopoietic stem cell acquires the specialized features of an gamma-delta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways." to "The process whereby a precursor cell type acquires the specialized features of an gamma-delta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways."
* Changed definition of GO:0002305 from "The process whereby a relatively unspecialized hemopoietic stem cell acquires the specialized features of a CD8-positive, gamma-delta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways." to "The process whereby a precursor cell type acquires the specialized features of a CD8-positive, gamma-delta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways."
* Changed definition of GO:0002306 from "The process whereby a relatively unspecialized hemopoietic stem cell acquires the specialized features of a CD4-positive, gamma-delta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways." to "The process whereby a precursor cell type acquires the specialized features of a CD4-positive, gamma-delta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways."
* Changed definition of GO:0002307 from "The process whereby a relatively unspecialized hemopoietic stem cell acquires the specialized features of a CD8-positive, alpha-beta regulatory T cell." to "The process whereby a precursor cell type acquires the specialized features of a CD8-positive, alpha-beta regulatory T cell."
* Changed definition of GO:0002308 from "The process whereby a relatively unspecialized hemopoietic stem cell acquires the specialized features of a CD8-positive, alpha-beta cytotoxic T cell." to "The process whereby a precursor cell type acquires the specialized features of a CD8-positive, alpha-beta cytotoxic T cell."
* Changed definition of GO:0002318 from "The process whereby an unspecialized hemopoietic stem cell acquires the specialized features of a myeloid progenitor cell. Myeloid progenitor cells include progenitor cells for any of the myeloid lineages." to "The process whereby a precursor cell type acquires the specialized features of a myeloid progenitor cell. Myeloid progenitor cells include progenitor cells for any of the myeloid lineages."
* Changed definition of GO:0002320 from "The process whereby an unspecialized hemopoietic stem cell acquires the specialized features of a lymphoid progenitor cell. Lymphoid progenitor cells include progenitor cells for any of the lymphoid lineages." to "The process whereby a precursor cell type acquires the specialized features of a lymphoid progenitor cell. Lymphoid progenitor cells include progenitor cells for any of the lymphoid lineages."
* Changed definition of GO:0002321 from "The process whereby an unspecialized hemopoietic stem cell acquires the specialized features of a natural killer cell progenitor." to "The process whereby a precursor cell type acquires the specialized features of a natural killer cell progenitor."
* Changed definition of GO:0002327 from "The process whereby a relatively unspecialized hemopoietic stem cell acquires the specialized features of an immature B cell." to "The process whereby a precursor cell type acquires the specialized features of an immature B cell."
* Changed definition of GO:0002328 from "The process whereby an unspecialized hemopoietic stem cell acquires the specialized features of a pro-B cell. Pro-B cells are the earliest stage of the B cell lineage and undergo heavy chain D and J gene rearrangements, although they are not fully committed." to "The process whereby a precursor cell type acquires the specialized features of a pro-B cell. Pro-B cells are the earliest stage of the B cell lineage and undergo heavy chain D and J gene rearrangements, although they are not fully committed."
* Changed definition of GO:0002329 from "The process whereby a relatively unspecialized hemopoietic stem cell acquires the specialized features of a pre-B cell. Pre-B cells follow the pro-B cell stage of immature B cell differentiation and undergo rearrangement of heavy chain V, D, and J gene segments." to "The process whereby a precursor cell type acquires the specialized features of a pre-B cell. Pre-B cells follow the pro-B cell stage of immature B cell differentiation and undergo rearrangement of heavy chain V, D, and J gene segments."
* Changed definition of GO:0002361 from "The process whereby a relatively unspecialized hemopoietic stem cell acquires the specialized features of a CD4-positive, CD25-positive, alpha-beta regulatory T cell." to "The process whereby a precursor cell type acquires the specialized features of a CD4-positive, CD25-positive, alpha-beta regulatory T cell."
* Changed definition of GO:0002572 from "The process whereby an unspecialized hemopoietic stem cell acquires the specialized features of a pro-T cell. Pro-T cells are the earliest stage of the T cell lineage but are not fully committed." to "The process whereby a precursor cell type acquires the specialized features of a pro-T cell. Pro-T cells are the earliest stage of the T cell lineage but are not fully committed."
* Changed name of GO:0007205 from "protein kinase C activation" to "activation of protein kinase C"
* Added synonym "protein kinase C activation" to GO:0007205
* Added general dbxref GOC:tb to synonym protein kinase C activation of GO:0007205
* Added general dbxref GOC:dph to synonym protein kinase C activation of GO:0007205
* Changed synonym scope of GO:0007205 from "Related" to "Exact"
* Changed definition of GO:0030183 from "The process whereby a relatively unspecialized hemopoietic stem cell acquires the specialized features of a B cell." to "The process whereby a precursor cell type acquires the specialized features of a B cell."
* Changed definition of GO:0030217 from "The process whereby a relatively unspecialized hemopoietic stem cell acquires the specialized features of a T cell." to "The process by which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex."
* Changed definition of GO:0033077 from "The process whereby a relatively unspecialized hemopoietic stem cell acquires the specialized features of a T cell via a differentiation pathway dependent upon transit through the thymus." to "The process whereby a precursor cell type acquires the specialized features of a T cell via a differentiation pathway dependent upon transit through the thymus."
* Changed definition of GO:0033078 from "The process whereby a relatively unspecialized hemopoietic stem cell acquires the specialized features of a T cell via a differentiation pathway independent of the thymus." to "The process whereby a precursor cell type acquires the specialized features of a T cell via a differentiation pathway independent of the thymus."
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"
* Changed synonym scope of GO:0042976 from "Narrow" to "Exact"
* Changed synonym scope of GO:0042976 from "Exact" to "Broad"
* Changed synonym scope of GO:0042976 from "Narrow" to "Related"
* Copied GO:0042976 to GO:0018108 with type OBO_REL:is_a
* Changed name of GO:0042977 from "tyrosine phosphorylation of JAK2 protein" to "activation of JAK2 protein"
* Deleted synonym "activation of JAK2 protein" from GO:0042977
* Added synonym "tyrosine phosphorylation of JAK2 protein" to GO:0042977
* Changed definition of GO:0046632 from "The process whereby a relatively unspecialized hemopoietic stem cell acquires the specialized features of an alpha-beta T cell." to "The process whereby a precursor cell type acquires the specialized features of an alpha-beta T cell."