[go-diff] GO update 02/12/2008
Remote CVS for Gene Ontology
gocvs at genome.Stanford.EDU
Tue Feb 12 21:30:44 PST 2008
OBODIFF of gene_ontology_edit.obo version 5.687 by 5.689
Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034248
* Created object of type obo:TERM with id GO:0034249
* Created object of type obo:TERM with id GO:0034250
* Created object of type obo:TERM with id GO:0034251
* Created object of type obo:TERM with id GO:0034252
* Created object of type obo:TERM with id GO:0034253
* Created object of type obo:TERM with id GO:0034254
* Created object of type obo:TERM with id GO:0034255
* Created object of type obo:TERM with id GO:0034256
* Created object of type obo:TERM with id GO:0034257
* Created object of type obo:TERM with id GO:0034258
* Created object of type obo:TERM with id GO:0034259
* Created object of type obo:TERM with id GO:0034260
* Created object of type obo:TERM with id GO:0034261
* Populated new object GO:0034248 (macro)
* Changed name of GO:0034248 from "<new term>" to "regulation of amide metabolic process"
* Set definition of GO:0034248 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amides."
* Added definition dbxref GOC:mah to GO:0034248
* Added synonym "regulation of amide metabolism" to GO:0034248
* Changed synonym scope of GO:0034248 from "Related" to "Exact"
* Copied GO:0034248 to GO:0043603 with type part_of
* Copied GO:0034248 to GO:0051171 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034248
* Populated new object GO:0034249 (macro)
* Changed name of GO:0034249 from "<new term>" to "negative regulation of amide metabolic process"
* Set definition of GO:0034249 to "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving amides."
* Added definition dbxref GOC:mah to GO:0034249
* Added synonym "negative regulation of amide metabolism" to GO:0034249
* Changed synonym scope of GO:0034249 from "Related" to "Exact"
* Copied GO:0034249 to GO:0034248 with type OBO_REL:is_a
* Copied GO:0034249 to GO:0051172 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034249
* Populated new object GO:0034250 (macro)
* Changed name of GO:0034250 from "<new term>" to "positive regulation of amide metabolic process"
* Set definition of GO:0034250 to "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving amides."
* Added definition dbxref GOC:mah to GO:0034250
* Added synonym "positive regulation of amide metabolism" to GO:0034250
* Changed synonym scope of GO:0034250 from "Related" to "Exact"
* Copied GO:0034250 to GO:0051173 with type OBO_REL:is_a
* Copied GO:0034250 to GO:0034248 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034250
* Populated new object GO:0034251 (macro)
* Changed name of GO:0034251 from "<new term>" to "regulation of amide catabolic process"
* Set definition of GO:0034251 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of amides."
* Added definition dbxref GOC:mah to GO:0034251
* Added synonym "regulation of amide breakdown" to GO:0034251
* Changed synonym scope of GO:0034251 from "Related" to "Exact"
* Added synonym "regulation of amide catabolism" to GO:0034251
* Changed synonym scope of GO:0034251 from "Related" to "Exact"
* Added synonym "regulation of amide degradation" to GO:0034251
* Changed synonym scope of GO:0034251 from "Related" to "Exact"
* Copied GO:0034251 to GO:0043605 with type part_of
* Copied GO:0034251 to GO:0034248 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034251
* Populated new object GO:0034252 (macro)
* Changed name of GO:0034252 from "<new term>" to "negative regulation of amide catabolic process"
* Set definition of GO:0034252 to "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of amides."
* Added definition dbxref GOC:mah to GO:0034252
* Added synonym "negative regulation of amide breakdown" to GO:0034252
* Changed synonym scope of GO:0034252 from "Related" to "Exact"
* Added synonym "negative regulation of amide catabolism" to GO:0034252
* Changed synonym scope of GO:0034252 from "Related" to "Exact"
* Added synonym "negative regulation of amide degradation" to GO:0034252
* Copied GO:0034252 to GO:0051172 with type OBO_REL:is_a
* Copied GO:0034252 to GO:0034249 with type OBO_REL:is_a
* Copied GO:0034252 to GO:0034251 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034252
* Populated new object GO:0034253 (macro)
* Changed name of GO:0034253 from "<new term>" to "positive regulation of amide catabolic process"
* Set definition of GO:0034253 to "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of amides."
* Added definition dbxref GOC:mah to GO:0034253
* Added synonym "positive regulation of amide breakdown" to GO:0034253
* Changed synonym scope of GO:0034253 from "Related" to "Exact"
* Added synonym "positive regulation of amide catabolism" to GO:0034253
* Changed synonym scope of GO:0034253 from "Related" to "Exact"
* Added synonym "positive regulation of amide degradation" to GO:0034253
* Copied GO:0034253 to GO:0034251 with type OBO_REL:is_a
* Copied GO:0034253 to GO:0051172 with type OBO_REL:is_a
* Copied GO:0034253 to GO:0034250 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034253
* Populated new object GO:0034254 (macro)
* Changed name of GO:0034254 from "<new term>" to "regulation of urea catabolic process"
* Set definition of GO:0034254 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of urea."
* Added definition dbxref GOC:mah to GO:0034254
* Added synonym "regulation of urea breakdown" to GO:0034254
* Changed synonym scope of GO:0034254 from "Related" to "Exact"
* Added synonym "regulation of urea catabolism" to GO:0034254
* Changed synonym scope of GO:0034254 from "Related" to "Exact"
* Added synonym "regulation of urea degradation" to GO:0034254
* Changed synonym scope of GO:0034254 from "Related" to "Exact"
* Copied GO:0034254 to GO:0034255 with type OBO_REL:is_a
* Copied GO:0034254 to GO:0043419 with type OBO_REL:is_a
* Copied GO:0034254 to GO:0034251 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034254
* Populated new object GO:0034255 (macro)
* Changed name of GO:0034255 from "<new term>" to "regulation of urea metabolic process"
* Set definition of GO:0034255 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving urea."
* Added definition dbxref GOC:mah to GO:0034255
* Added synonym "regulation of urea metabolism" to GO:0034255
* Changed synonym scope of GO:0034255 from "Related" to "Exact"
* Copied GO:0034255 to GO:0034248 with type OBO_REL:is_a
* Copied GO:0034255 to GO:0019627 with type part_of
* Assigned namespace "biological_process" to GO:0034255
* Populated new object GO:0034256 (macro)
* Changed name of GO:0034256 from "<new term>" to "chlorophyll(ide) b reductase activity"
* Set definition of GO:0034256 to "Catalysis of the reaction: 71-hydroxychlorophyllide a + NAD(P)+ = chlorophyllide b + NAD(P)H + H+."
* Added definition dbxref EC:1.1.1.294 to GO:0034256
* Added definition dbxref MetaCyc:RXN-7678 to GO:0034256
* Added general dbxref EC:1.1.1.294 to GO:0034256
* Added general dbxref MetaCyc:RXN-7678 to GO:0034256
* Added synonym "Chl b reductase activity" to GO:0034256
* Changed synonym scope of GO:0034256 from "Related" to "Exact"
* Added synonym "chlorophyll b reductase activity" to GO:0034256
* Changed synonym scope of GO:0034256 from "Related" to "Exact"
* Added synonym "chlorophyllide b reductase activity" to GO:0034256
* Changed synonym scope of GO:0034256 from "Related" to "Exact"
* Copied GO:0034256 to GO:0016616 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0034256
* Populated new object GO:0034257 (macro)
* Changed name of GO:0034257 from "<new term>" to "nicotinamide riboside transporter activity"
* Set definition of GO:0034257 to "Catalysis of the transfer of nicotinamide riboside, which is a pyridine-3-carboxamide covalently bonded to a ribose sugar, from one side of a membrane to the other."
* Added definition dbxref GOC:se to GO:0034257
* Copied GO:0034257 to GO:0005337 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0034257
* Populated new object GO:0034258 (macro)
* Changed name of GO:0034258 from "<new term>" to "nicotinamide riboside transport"
* Set definition of GO:0034258 to "The directed movement of a nicotinamide riboside, which is a pyridine-3-carboxamide covalently bonded to a ribose sugar, into, out of, within or between cells."
* Added definition dbxref GOC:se to GO:0034258
* Copied GO:0034258 to GO:0015858 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034258
* Populated new object GO:0034259 (macro)
* Changed name of GO:0034259 from "<new term>" to "negative regulation of Rho GTPase activity"
* Set definition of GO:0034259 to "Any process that stops or reduces the rate of activity of a GTPase of the Rho family."
* Added definition dbxref GOC:mah to GO:0034259
* Added synonym "down regulation of Rho GTPase activity" to GO:0034259
* Changed synonym scope of GO:0034259 from "Related" to "Exact"
* Added synonym "down-regulation of Rho GTPase activity" to GO:0034259
* Changed synonym scope of GO:0034259 from "Related" to "Exact"
* Added synonym "downregulation of Rho GTPase activity" to GO:0034259
* Changed synonym scope of GO:0034259 from "Related" to "Exact"
* Added synonym "inhibition of Rho GTPase activity" to GO:0034259
* Changed synonym scope of GO:0034259 from "Related" to "Narrow"
* Copied GO:0034259 to GO:0034261 with type OBO_REL:is_a
* Copied GO:0034259 to GO:0032319 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034259
* Populated new object GO:0034260 (macro)
* Changed name of GO:0034260 from "<new term>" to "negative regulation of GTPase activity"
* Set definition of GO:0034260 to "Any process that stops or reduces the rate of GTP hydrolysis by an GTPase."
* Added definition dbxref GOC:mah to GO:0034260
* Added synonym "down regulation of GTPase activity" to GO:0034260
* Changed synonym scope of GO:0034260 from "Related" to "Exact"
* Added synonym "down-regulation of GTPase activity" to GO:0034260
* Changed synonym scope of GO:0034260 from "Related" to "Exact"
* Added synonym "downregulation of GTPase activity" to GO:0034260
* Changed synonym scope of GO:0034260 from "Related" to "Exact"
* Added synonym "inhibition of GTPase activity" to GO:0034260
* Changed synonym scope of GO:0034260 from "Related" to "Narrow"
* Added synonym "negative regulation of guanosinetriphosphatase activity" to GO:0034260
* Changed synonym scope of GO:0034260 from "Related" to "Exact"
* Copied GO:0034260 to GO:0043087 with type OBO_REL:is_a
* Copied GO:0034260 to GO:0051346 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034260
* Populated new object GO:0034261 (macro)
* Changed name of GO:0034261 from "<new term>" to "negative regulation of Ras GTPase activity"
* Set definition of GO:0034261 to "Any process that stops or reduces the rate of activity of a GTPase of the Ras superfamily."
* Added definition dbxref GOC:mah to GO:0034261
* Added synonym "down regulation of Ras GTPase activity" to GO:0034261
* Changed synonym scope of GO:0034261 from "Related" to "Exact"
* Added synonym "down-regulation of Ras GTPase activity" to GO:0034261
* Changed synonym scope of GO:0034261 from "Related" to "Exact"
* Added synonym "downregulation of Ras GTPase activity" to GO:0034261
* Changed synonym scope of GO:0034261 from "Related" to "Exact"
* Added synonym "inhibition of Ras GTPase activity" to GO:0034261
* Changed synonym scope of GO:0034261 from "Related" to "Narrow"
* Copied GO:0034261 to GO:0032318 with type OBO_REL:is_a
* Copied GO:0034261 to GO:0034260 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034261
* Copied GO:0000186 to GO:0006468 with type OBO_REL:is_a
* Copied GO:0000187 to GO:0006468 with type OBO_REL:is_a
* Deleted definition dbxref EC:1.6.99.2 from GO:0003955
* Added definition dbxref EC:1.6.5.2 to GO:0003955
* Changed definition of GO:0004294 from "Catalysis of the release of an N-terminal tripeptide from a polypeptide." to "Catalysis of the release of an N-terminal tripeptide from a polypeptide at neutral pH."
* Set definition of GO:0004694 to "Catalysis of the phosphorylation of the alpha subunit of eukaryotic translation initiation factor 2 (EIF2)."
* Added definition dbxref GOC:mah to GO:0004694
* Added definition dbxref InterPro:IPR015516 to GO:0004694
* Copied GO:0006994 to GO:0032569 with type OBO_REL:is_a
* Changed name of GO:0007228 from "activation of hh target transcription factor" to "positive regulation of hh target transcription factor activity"
* Changed definition of GO:0007228 from "Upregulation of the activity of a transcription factor that activates transcription of Hedgehog-target genes in response to Smoothened signaling. In Drosophila, Cubitus interruptus (Ci) is the only identified transcription factor so far in the Hedgehog signaling pathway. In vertebrates, members of the Gli protein family are activated in this way. Activation of the Gli/Ci transcription factor is distinct from its stabilization, when proteolytic cleavage is inhibited." to "Any process that increases the activity of a transcription factor that activates transcription of Hedgehog-target genes in response to Smoothened signaling. In Drosophila, Cubitus interruptus (Ci) is the only identified transcription factor so far in the Hedgehog signaling pathway. In vertebrates, members of the Gli protein family are activated in this way. Activation of the Gli/Ci transcription factor is distinct from its stabilization, when proteolytic cleavage is inhibited."
* Added definition dbxref GOC:dph to GO:0007228
* Added definition dbxref GOC:tb to GO:0007228
* Added synonym "activation of hh target transcription factor" to GO:0007228
* Added general dbxref GOC:tb to synonym activation of hh target transcription factor of GO:0007228
* Added general dbxref GOC:dph to synonym activation of hh target transcription factor of GO:0007228
* Changed synonym scope of GO:0007228 from "Related" to "Exact"
* Set definition of GO:0008240 to "Catalysis of the release of an N-terminal tripeptide from a polypeptide."
* Added definition dbxref GOC:mah to GO:0008240
* Set definition of GO:0008330 to "Catalysis of the reaction: protein threonine/tyrosine phosphate + H2O = protein threonine/tyrosine + phosphate."
* Added definition dbxref GOC:mah to GO:0008330
* added secondary id GO:0046407 to GO:0010277
* Changed definition of GO:0010277 from "Catalysis of the reactions: chlorophyllide a + O2 + NADPH + H+ = 7-hydroxychlorophyllide a + H2O + NADP+ and 7-hydroxychlorophyllide a + O2 + NADPH + H+ = chlorophyllide b + 2 H2O + NADP+." to "Catalysis of hydroxylation at the 7-methyl group of chlorophyllide a, according to the reactions: chlorophyllide a + O2 + NADPH + H+ = 7-hydroxychlorophyllide a + H2O + NADP+ and 7-hydroxychlorophyllide a + O2 + NADPH + H+ = chlorophyllide b + 2 H2O + NADP+."
* Added definition dbxref MetaCyc:RXN-7677 to GO:0010277
* Added synonym "chlorophyll a oxygenase activity" to GO:0010277
* Changed synonym scope of GO:0010277 from "Related" to "Exact"
* Added synonym "chlorophyll b synthetase activity" to GO:0010277
* Changed synonym scope of GO:0010277 from "Related" to "Exact"
* Copied GO:0032320 to GO:0043547 with type OBO_REL:is_a
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"
* Deleted GO:0043089 --OBO_REL:is_a--> GO:0043547
* Deleted GO:0046407 --OBO_REL:is_a--> GO:0016696
* Destroyed object GO:0046407
* Changed name of GO:0048034 from "heme o biosynthetic process" to "heme O biosynthetic process"
* Deleted synonym "haem o biosynthesis" from GO:0048034
* Deleted synonym "haem o biosynthetic process" from GO:0048034
* Deleted synonym "heme o anabolism" from GO:0048034
* Deleted synonym "heme o biosynthesis" from GO:0048034
* Deleted synonym "heme o formation" from GO:0048034
* Deleted synonym "heme o synthesis" from GO:0048034
* Added synonym "haem O biosynthesis" to GO:0048034
* Changed synonym scope of GO:0048034 from "Related" to "Exact"
* Added synonym "haem O biosynthetic process" to GO:0048034
* Changed synonym scope of GO:0048034 from "Related" to "Exact"
* Added synonym "heme O anabolism" to GO:0048034
* Changed synonym scope of GO:0048034 from "Related" to "Exact"
* Added synonym "heme O biosynthesis" to GO:0048034
* Changed synonym scope of GO:0048034 from "Related" to "Exact"
* Added synonym "heme O formation" to GO:0048034
* Changed synonym scope of GO:0048034 from "Related" to "Exact"
* Added synonym "heme O synthesis" to GO:0048034
* Changed synonym scope of GO:0048034 from "Related" to "Exact"
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