[go-diff] GO update 02/13/2008

Wed Feb 13 21:30:45 PST 2008

OBODIFF of gene_ontology_edit.obo version 5.689 by 5.692

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0000496
* Created object of type obo:TERM with id GO:0000497
* Created object of type obo:TERM with id GO:0000498
* Created object of type obo:TERM with id GO:0000499
* Created object of type obo:TERM with id GO:0000944
* Created object of type obo:TERM with id GO:0000945
* Created object of type obo:TERM with id GO:0000946
* Created object of type obo:TERM with id GO:0010542
* Populated new object GO:0000496 (macro)
  * Changed name of GO:0000496 from "<new term>" to "base pairing"
  * Added comment "Note that with respect to annotation, "base pairing" and its child terms are intended to be used to annotate the activity of gene products composed of nucleic acid, presumably RNA, to interact with other nucleic acid molecules via base pairing. Internal base pairing with itself is considered part of the secondary structure of the molecule and is not within the scope of GO function."
  * Set definition of GO:0000496 to "Interacting selectively with nucleic acid via hydrogen bonds between the bases of a gene product molecule and the bases of a target nucleic acid molecule."
  * Added definition dbxref GOC:krc to GO:0000496
  * Copied GO:0000496 to GO:0003676 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0000496
* Populated new object GO:0000497 (macro)
  * Changed name of GO:0000497 from "<new term>" to "base pairing with DNA"
  * Added comment "Note that with respect to annotation, "base pairing" and its child terms are intended to be used to annotate the activity of gene products composed of nucleic acid, presumably RNA, to interact with DNA molecules via base pairing. Internal base pairing with itself is considered part of the secondary structure of the molecule and is not within the scope of GO function."
  * Set definition of GO:0000497 to "Interacting selectively with nucleic acid via hydrogen bonds between the bases of a gene product molecule and the bases of a target nucleic acid molecule"
  * Added definition dbxref GOC:krc to GO:0000497
  * Copied GO:0000497 to GO:0000496 with type OBO_REL:is_a
  * Copied GO:0000497 to GO:0003677 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0000497
* Populated new object GO:0000498 (macro)
  * Changed name of GO:0000498 from "<new term>" to "base pairing with RNA"
  * Added comment "Note that with respect to annotation, "base pairing with RNA" and its child terms are intended to be used to annotate the activity of gene products composed of nucleic acid, presumably RNA, to interact with other RNA molecules via base pairing. Internal base pairing with itself is considered part of the secondary structure of the molecule and is not within the scope of GO function."
  * Set definition of GO:0000498 to "Interacting selectively with ribonucleic acid (RNA) via hydrogen bonds between the bases of a gene product molecule and the bases of a target RNA molecule."
  * Added definition dbxref GOC:krc to GO:0000498
  * Copied GO:0000498 to GO:0003723 with type OBO_REL:is_a
  * Copied GO:0000498 to GO:0000496 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0000498
* Populated new object GO:0000499 (macro)
  * Changed name of GO:0000499 from "<new term>" to "base pairing with mRNA"
  * Added comment "Note that with respect to annotation, "base pairing with RNA" and its child terms are intended to be used to annotate the activity of gene products composed of nucleic acid, presumably RNA, to interact with other RNA molecules via base pairing. Internal base pairing with itself is considered part of the secondary structure of the molecule and is not within the scope of GO function."
  * Set definition of GO:0000499 to "Interacting selectively with messenger ribonucleic acid (mRNA) via hydrogen bonds between the bases of a gene product molecule and the bases of a target mRNA molecule."
  * Added definition dbxref GOC:krc to GO:0000499
  * Copied GO:0000499 to GO:0000498 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0000499
* Populated new object GO:0000944 (macro)
  * Changed name of GO:0000944 from "<new term>" to "base pairing with rRNA"
  * Added comment "Note that with respect to annotation, "base pairing with RNA" and its child terms are intended to be used to annotate the activity of gene products composed of nucleic acid, presumably RNA, to interact with other RNA molecules via base pairing. Internal base pairing with itself is considered part of the secondary structure of the molecule and is not within the scope of GO function."
  * Set definition of GO:0000944 to "Interacting selectively with ribosomal ribonucleic acid (rRNA) via hydrogen bonds between the bases of a gene product molecule and the bases of a target rRNA molecule."
  * Added definition dbxref GOC:krc to GO:0000944
  * Copied GO:0000944 to GO:0000498 with type OBO_REL:is_a
  * Copied GO:0000944 to GO:0019843 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0000944
* Populated new object GO:0000945 (macro)
  * Changed name of GO:0000945 from "<new term>" to "base pairing with snRNA"
  * Added comment "Note that with respect to annotation, "base pairing with RNA" and its child terms are intended to be used to annotate the activity of gene products composed of nucleic acid, presumably RNA, to interact with other RNA molecules via base pairing. Internal base pairing with itself is considered part of the secondary structure of the molecule and is not within the scope of GO function."
  * Set definition of GO:0000945 to "Interacting selectively with small nuclear ribonucleic acid (snRNA) via hydrogen bonds between the bases of a gene product molecule and the bases of a target snRNA molecule."
  * Added definition dbxref GOC:krc to GO:0000945
  * Copied GO:0000945 to GO:0000498 with type OBO_REL:is_a
  * Copied GO:0000945 to GO:0017069 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0000945
* Populated new object GO:0000946 (macro)
  * Changed name of GO:0000946 from "<new term>" to "base pairing with tRNA"
  * Added comment "Note that with respect to annotation, "base pairing with RNA" and its child terms are intended to be used to annotate the activity of gene products composed of nucleic acid, presumably RNA, to interact with other RNA molecules via base pairing. Internal base pairing with itself is considered part of the secondary structure of the molecule and is not within the scope of GO function."
  * Set definition of GO:0000946 to "Interacting selectively with transfer ribonucleic acid (mRNA) via hydrogen bonds between the bases of a gene product molecule and the bases of a target tRNA molecule."
  * Added definition dbxref GOC:krc to GO:0000946
  * Copied GO:0000946 to GO:0000049 with type OBO_REL:is_a
  * Copied GO:0000946 to GO:0000498 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0000946
* Populated new object GO:0010542 (macro)
  * Changed name of GO:0010542 from "<new term>" to "nitrate efflux transmembrane transporter activity"
  * Copied GO:0010542 to GO:0015562 with type OBO_REL:is_a
  * Copied GO:0010542 to GO:0015291 with type OBO_REL:is_a
  * Copied GO:0010542 to GO:0015113 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010542
* Deleted GO:0000332 --OBO_REL:is_a--> GO:0003674
* Copied GO:0000332 to GO:0000497 with type OBO_REL:is_a
* Changed name of GO:0002017 from "aldosterone mediated regulation of blood volume" to "renal regulation of blood volume by aldosterone"
* Added definition dbxref GOC:dph to GO:0002017
* Added definition dbxref GOC:tb to GO:0002017
* Added synonym "aldosterone mediated regulation of blood volume" to GO:0002017
* Added general dbxref GOC:tb to synonym aldosterone mediated regulation of blood volume of GO:0002017
* Added general dbxref GOC:dph to synonym aldosterone mediated regulation of blood volume of GO:0002017
* Changed synonym scope of GO:0002017 from "Related" to "Exact"
* Changed name of GO:0007072 from "activation of transcription on exit from mitosis" to "positive regulation of transcription on exit from mitosis"
* Changed definition of GO:0007072 from "The cell cycle process whereby transcription is positively regulated as the cell leaves M phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place." to "Any process that increases the frequency, rate or extent of transcription as the cell leaves M phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place."
* Added definition dbxref GOC:dph to GO:0007072
* Added definition dbxref GOC:tb to GO:0007072
* Added synonym "activation of transcription on exit from mitosis" to GO:0007072
* Added general dbxref GOC:tb to synonym activation of transcription on exit from mitosis of GO:0007072
* Added general dbxref GOC:dph to synonym activation of transcription on exit from mitosis of GO:0007072
* Changed synonym scope of GO:0007072 from "Related" to "Narrow"
* Changed name of GO:0007073 from "activation of transcription on exit from mitosis, from RNA polymerase I promoter" to "positive regulation of transcription on exit from mitosis, from RNA polymerase I promoter"
* Set definition of GO:0007073 to "Any process that increases the frequency, rate or extent of transcription from an RNA polymerase I promoter as the cell leaves M phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place."
* Added definition dbxref GOC:dph to GO:0007073
* Added definition dbxref GOC:tb to GO:0007073
* Added general dbxref GOC:tb to synonym activation of transcription on exit from mitosis, from Pol I promoter of GO:0007073
* Added general dbxref GOC:dph to synonym activation of transcription on exit from mitosis, from Pol I promoter of GO:0007073
* Changed synonym scope of GO:0007073 from "Exact" to "Narrow"
* Added synonym "activation of transcription on exit from mitosis, from RNA polymerase I promoter" to GO:0007073
* Changed synonym scope of GO:0007073 from "Related" to "Narrow"
* Changed name of GO:0007074 from "activation of transcription on exit from mitosis, from RNA polymerase II promoter" to "positive regulation of transcription on exit from mitosis, from RNA polymerase II promoter"
* Set definition of GO:0007074 to "Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as the cell leaves M phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place."
* Added definition dbxref GOC:dph to GO:0007074
* Added definition dbxref GOC:tb to GO:0007074
* Changed synonym scope of GO:0007074 from "Exact" to "Narrow"
* Added synonym "activation of transcription on exit from mitosis, from RNA polymerase II promoter" to GO:0007074
* Changed synonym scope of GO:0007074 from "Related" to "Narrow"
* Changed name of GO:0007075 from "activation of transcription on exit from mitosis, from RNA polymerase III promoter" to "positive regulation of transcription on exit from mitosis, from RNA polymerase III promoter"
* Set definition of GO:0007075 to "Any process that increases the frequency, rate or extent of transcription from an RNA polymerase III promoter as the cell leaves M phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place."
* Added definition dbxref GOC:dph to GO:0007075
* Added definition dbxref GOC:tb to GO:0007075
* Changed synonym scope of GO:0007075 from "Exact" to "Narrow"
* Added synonym "activation of transcription on exit from mitosis, from RNA polymerase III promoter" to GO:0007075
* Added general dbxref GOC:tb to synonym activation of transcription on exit from mitosis, from RNA polymerase III promoter of GO:0007075
* Added general dbxref GOC:dph to synonym activation of transcription on exit from mitosis, from RNA polymerase III promoter of GO:0007075
* Changed synonym scope of GO:0007075 from "Related" to "Narrow"
* Changed name of GO:0007190 from "adenylate cyclase activation" to "activation of adenylate cyclase activity"
* Added synonym "adenylate cyclase activation" to GO:0007190
* Added general dbxref GOC:tb to synonym adenylate cyclase activation of GO:0007190
* Added general dbxref GOC:dph to synonym adenylate cyclase activation of GO:0007190
* Changed synonym scope of GO:0007190 from "Related" to "Exact"
* Changed name of GO:0007221 from "activation of Notch receptor target transcription factor" to "positive regulation of transcription of Notch receptor target"
* Changed synonym scope of GO:0007221 from "Exact" to "Related"
* Changed synonym scope of GO:0007221 from "Exact" to "Related"
* Deleted GO:0007221 --OBO_REL:is_a--> GO:0051091
* Copied GO:0007221 to GO:0045944 with type OBO_REL:is_a
* Copied GO:0030533 to GO:0000499 with type OBO_REL:is_a
* Deleted GO:0030555 --OBO_REL:is_a--> GO:0003723
* Copied GO:0030555 to GO:0000498 with type OBO_REL:is_a
* Deleted GO:0030556 --OBO_REL:is_a--> GO:0019843
* Copied GO:0030556 to GO:0000944 with type OBO_REL:is_a
* Deleted GO:0030557 --OBO_REL:is_a--> GO:0000049
* Copied GO:0030557 to GO:0000946 with type OBO_REL:is_a
* Deleted GO:0030566 --OBO_REL:is_a--> GO:0017069
* Copied GO:0030566 to GO:0000945 with type OBO_REL:is_a
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"