[Go-diff] GO update 02/28/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Thu Feb 28 21:30:44 PST 2008 

OBODIFF of gene_ontology_edit.obo version 5.716 by 5.717

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034284
* Created object of type obo:TERM with id GO:0034285
* Created object of type obo:TERM with id GO:0034286
* Created object of type obo:TERM with id GO:0034287
* Created object of type obo:TERM with id GO:0034288
* Created object of type obo:TERM with id GO:0034289
* Populated new object GO:0034284 (macro)
  * Changed name of GO:0034284 from "<new term>" to "response to monosaccharide stimulus"
  * Set definition of GO:0034284 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monosaccharide stimulus."
  * Added definition dbxref GOC:mah to GO:0034284
  * Copied GO:0034284 to GO:0009743 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034284
* Populated new object GO:0034285 (macro)
  * Changed name of GO:0034285 from "<new term>" to "response to disaccharide stimulus"
  * Set definition of GO:0034285 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disaccharide stimulus."
  * Added definition dbxref GOC:sart to GO:0034285
  * Copied GO:0034285 to GO:0009743 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034285
* Populated new object GO:0034286 (macro)
  * Changed name of GO:0034286 from "<new term>" to "response to maltose stimulus"
  * Set definition of GO:0034286 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a maltose stimulus."
  * Added definition dbxref GOC:sart to GO:0034286
  * Copied GO:0034286 to GO:0034285 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034286
* Populated new object GO:0034287 (macro)
  * Changed name of GO:0034287 from "<new term>" to "detection of monosaccharide stimulus"
  * Set definition of GO:0034287 to "The series of events in which a stimulus from a monosaccharide is received and converted into a molecular signal."
  * Added definition dbxref GOC:mah to GO:0034287
  * Added synonym "perception of monosaccharide stimulus" to GO:0034287
  * Copied GO:0034287 to GO:0009730 with type OBO_REL:is_a
  * Copied GO:0034287 to GO:0034284 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034287
* Populated new object GO:0034288 (macro)
  * Changed name of GO:0034288 from "<new term>" to "detection of disaccharide stimulus"
  * Set definition of GO:0034288 to "The series of events in which a stimulus from a disaccharide is received and converted into a molecular signal."
  * Added definition dbxref GOC:sart to GO:0034288
  * Added synonym "perception of disaccharide stimulus" to GO:0034288
  * Copied GO:0034288 to GO:0034285 with type OBO_REL:is_a
  * Copied GO:0034288 to GO:0009730 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034288
* Populated new object GO:0034289 (macro)
  * Changed name of GO:0034289 from "<new term>" to "detection of maltose stimulus"
  * Set definition of GO:0034289 to "The series of events in which a maltose stimulus is received by a cell and converted into a molecular signal."
  * Added definition dbxref GOC:sart to GO:0034289
  * Added synonym "perception of maltose stimulus" to GO:0034289
  * Copied GO:0034289 to GO:0034286 with type OBO_REL:is_a
  * Copied GO:0034289 to GO:0034288 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034289
* Changed definition of GO:0001410 from "The process whose specific outcome is the progression of the chlamydospore over time, from its formation to the mature structure. Chlamydospores are thick-walled, spore-like cells borne on the ends of elongated cells attached to hyphae or pseudohyphae, seen in the species Candida albicans and Candida dubliniensis. Note that although these structures resemble the chlamydospores of other fungi, it is not known whether they are true spores, so this process is not currently considered an instance of spore formation." to "The process whose specific outcome is the progression of the chlamydospore over time, from its formation to the mature structure. Chlamydospores are thick-walled, spore-like cells borne on the ends of elongated cells attached to hyphae or pseudohyphae, seen in the species Candida albicans and Candida dubliniensis. Note that although these structures resemble the chlamydospores of other fungi, it is not known whether they are true spores, so this process is not currently considered a type of spore formation."
* Changed name of GO:0001765 from "lipid raft formation" to "membrane raft formation"
* Changed definition of GO:0001765 from "Formation of tightly-packed gel-like membrane microdomains enriched in sphingolipids and cholesterol." to "Formation of a membrane raft, a small (10-200 nm), heretogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalizes cellular processes."
* Added definition dbxref PMID:16645198 to GO:0001765
* Added synonym "lipid raft formation" to GO:0001765
* Changed synonym scope of GO:0001765 from "Related" to "Exact"
* Changed name of GO:0001766 from "lipid raft polarization" to "membrane raft polarization"
* Changed definition of GO:0001766 from "The clustering and aggregation of lipid rafts at a single cellular pole during activation of particular cell types, such as lymphocytes." to "The clustering and aggregation of membrane rafts at a single cellular pole during activation of particular cell types, such as lymphocytes."
* Added synonym "lipid raft polarization" to GO:0001766
* Changed synonym scope of GO:0001766 from "Related" to "Exact"
* Changed definition of GO:0001767 from "The directed orientation of lymphocyte signaling molecules and associated lipid rafts towards a chemokine gradient or a contact point with an appropriate activating cell." to "The directed orientation of lymphocyte signaling molecules and associated membrane rafts towards a chemokine gradient or a contact point with an appropriate activating cell."
* Changed definition of GO:0001768 from "The directed orientation of T cell signaling molecules and associated lipid rafts towards a chemokine gradient or a contact point with antigen presenting cell." to "The directed orientation of T cell signaling molecules and associated membrane rafts towards a chemokine gradient or a contact point with antigen presenting cell."
* Changed definition of GO:0001769 from "The directed orientation of B cell signaling molecules and associated lipid rafts towards a chemokine gradient of a contact point with an antigen displaying cell." to "The directed orientation of B cell signaling molecules and associated membrane rafts towards a chemokine gradient of a contact point with an antigen displaying cell."
* Changed definition of GO:0001770 from "The directed orientation of natural killer cell signaling molecules and associated lipid rafts towards a chemokine gradient or a contact point with a cell displaying natural killer cell activating ligands." to "The directed orientation of natural killer cell signaling molecules and associated membrane rafts towards a chemokine gradient or a contact point with a cell displaying natural killer cell activating ligands."
* Changed definition of GO:0001771 from "The formation of an area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell through the clustering of particular signaling and adhesion molecules and their associated lipid rafts on both the lymphocyte and target cell, which facilitates activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction." to "The formation of an area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and target cell, which facilitates activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction."
* Changed definition of GO:0001772 from "An area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell formed through the clustering of particular signaling and adhesion molecules and their associated lipid rafts on both the lymphocyte and the target cell and facilitating activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction." to "An area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell formed through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and the target cell and facilitating activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction."
* Changed definition of GO:0002771 from "A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of a lymphocyte capable of inhibiting an immune effector process contributing to an immune response." to "A series of molecular signals initiated by the binding of an extracellular ligand to a inhibitory killer cell immunoglobulin-like receptor capable of inhibiting an immune effector process contributing to an immune response."
* added secondary id GO:0016599 to GO:0005901
* Added synonym "caveolar membrane" to GO:0005901
* Copied GO:0005901 to GO:0045121 with type OBO_REL:is_a
* Deleted GO:0009731 --OBO_REL:is_a--> GO:0009730
* Copied GO:0009731 to GO:0034288 with type OBO_REL:is_a
* Changed definition of GO:0009732 from "The series of events in which a stimulus from a hexose substance is received and converted into a molecular signal." to "The series of events in which a stimulus from a hexose is received and converted into a molecular signal."
* Deleted GO:0009732 --OBO_REL:is_a--> GO:0009730
* Copied GO:0009732 to GO:0034287 with type OBO_REL:is_a
* Deleted GO:0009744 --OBO_REL:is_a--> GO:0009743
* Copied GO:0009744 to GO:0034285 with type OBO_REL:is_a
* Deleted GO:0009746 --OBO_REL:is_a--> GO:0009743
* Copied GO:0009746 to GO:0034284 with type OBO_REL:is_a
* Deleted GO:0016599 --part_of--> GO:0005901
* Deleted GO:0016599 --OBO_REL:is_a--> GO:0044459
* Deleted GO:0016600 --part_of--> GO:0016599
* Destroyed object GO:0016599
* Deleted GO:0016600 --part_of--> GO:0016599
* Copied GO:0016600 to GO:0005901 with type part_of
* Deleted GO:0019228 --part_of--> GO:0019226
* Changed name of GO:0031579 from "lipid raft organization and biogenesis" to "membrane raft organization and biogenesis"
* Changed definition of GO:0031579 from "A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of lipid rafts, tightly-packed gel-like membrane microdomains enriched in sphingolipids and cholesterol." to "A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of membrane rafts, small (10-200 nm), heretogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes."
* Added synonym "lipid raft organization and biogenesis" to GO:0031579
* Changed synonym scope of GO:0031579 from "Related" to "Exact"
* Deleted GO:0031579 --OBO_REL:is_a--> GO:0007009
* Copied GO:0031579 to GO:0016044 with type OBO_REL:is_a
* Changed name of GO:0031580 from "lipid raft distribution" to "membrane raft distribution"
* Changed definition of GO:0031580 from "The process that establishes the spatial arrangement of lipid rafts within the plasma membrane." to "The process that establishes the spatial arrangement of membrane rafts within a cellular membrane."
* Added synonym "lipid raft distribution" to GO:0031580
* Changed synonym scope of GO:0031580 from "Related" to "Exact"
* Changed name of GO:0032596 from "protein transport into lipid raft" to "protein transport into membrane raft"
* Changed definition of GO:0032596 from "The directed movement of a protein into a lipid raft." to "The directed movement of a protein into a membrane raft."
* Deleted synonym "protein translocation into lipid raft" from GO:0032596
* Deleted synonym "receptor translocation into lipid raft" from GO:0032596
* Deleted synonym "receptor transport into lipid raft" from GO:0032596
* Added synonym "protein translocation into membrane raft" to GO:0032596
* Changed synonym scope of GO:0032596 from "Related" to "Exact"
* Added synonym "protein transport into lipid raft" to GO:0032596
* Changed synonym scope of GO:0032596 from "Related" to "Exact"
* Added synonym "receptor translocation into membrane raft" to GO:0032596
* Changed synonym scope of GO:0032596 from "Related" to "Narrow"
* Added synonym "receptor transport into membrane raft" to GO:0032596
* Changed synonym scope of GO:0032596 from "Related" to "Narrow"
* Changed name of GO:0032597 from "B cell receptor transport into lipid raft" to "B cell receptor transport into membrane raft"
* Changed definition of GO:0032597 from "The directed movement of a B cell receptor into a lipid raft." to "The directed movement of a B cell receptor into a membrane raft."
* Deleted synonym "B cell receptor translocation into lipid raft" from GO:0032597
* Deleted synonym "BCR translocation into lipid raft" from GO:0032597
* Deleted synonym "BCR transport into lipid raft" from GO:0032597
* Added synonym "B cell receptor translocation into membrane raft" to GO:0032597
* Changed synonym scope of GO:0032597 from "Related" to "Exact"
* Added synonym "B cell receptor transport into lipid raft" to GO:0032597
* Changed synonym scope of GO:0032597 from "Related" to "Exact"
* Added synonym "BCR translocation into membrane raft" to GO:0032597
* Changed synonym scope of GO:0032597 from "Related" to "Exact"
* Added synonym "BCR transport into membrane raft" to GO:0032597
* Changed synonym scope of GO:0032597 from "Related" to "Exact"
* Changed name of GO:0032599 from "protein transport out of lipid raft" to "protein transport out of membrane raft"
* Changed definition of GO:0032599 from "The directed movement of a protein out of a lipid raft." to "The directed movement of a protein out of a membrane raft."
* Deleted synonym "protein translocation out of lipid raft" from GO:0032599
* Deleted synonym "receptor translocation out of lipid raft" from GO:0032599
* Deleted synonym "receptor transport out of lipid raft" from GO:0032599
* Added synonym "protein translocation out of membrane raft" to GO:0032599
* Changed synonym scope of GO:0032599 from "Related" to "Exact"
* Added synonym "protein transport out of lipid raft" to GO:0032599
* Changed synonym scope of GO:0032599 from "Related" to "Exact"
* Added synonym "receptor translocation out of membrane raft" to GO:0032599
* Changed synonym scope of GO:0032599 from "Related" to "Narrow"
* Added synonym "receptor transport out of membrane raft" to GO:0032599
* Changed synonym scope of GO:0032599 from "Related" to "Narrow"
* Changed name of GO:0032600 from "chemokine receptor transport out of lipid raft" to "chemokine receptor transport out of membrane raft"
* Changed definition of GO:0032600 from "The directed movement of a chemokine receptor out of a lipid raft." to "The directed movement of a chemokine receptor out of a membrane raft."
* Deleted synonym "chemokine receptor translocation out of lipid raft" from GO:0032600
* Added synonym "chemokine receptor translocation out of membrane raft" to GO:0032600
* Changed synonym scope of GO:0032600 from "Related" to "Exact"
* Added synonym "chemokine receptor transport out of lipid raft" to GO:0032600
* Changed synonym scope of GO:0032600 from "Related" to "Exact"
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"
* Changed name of GO:0045121 from "lipid raft" to "membrane raft"
* Changed definition of GO:0045121 from "Specialized membrane domains composed mainly of cholesterol and sphingolipids, and relatively poor in polyunsaturated lipids such as glycerophospholipids. The formation of these membrane domains is promoted by the presence of cholesterol in the lipid bilayer: the rigid hexagonal rings of cholesterol can pack tightly against the saturated hydrocarbon chains of some membrane lipids, allowing these lipids to assemble into cohesive units floating in the mass of loosely packed polyunsaturated plasma membrane components." to "Any of the small (10-200 nm), heretogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions."
* Deleted definition dbxref PMID:11880687 from GO:0045121
* Added definition dbxref PMID:16645198 to GO:0045121
* Added synonym "lipid raft" to GO:0045121
* Changed synonym scope of GO:0045121 from "Related" to "Exact"
* Deleted GO:0045121 --OBO_REL:is_a--> GO:0044459
* Copied GO:0045121 to GO:0044425 with type OBO_REL:is_a
* Deleted GO:0051594 --OBO_REL:is_a--> GO:0009730
* Copied GO:0051594 to GO:0009749 with type OBO_REL:is_a
* Copied GO:0051594 to GO:0009732 with type OBO_REL:is_a
* Changed name of GO:0051665 from "lipid raft localization" to "membrane raft localization"
* Changed definition of GO:0051665 from "The processes by which lipid rafts are transported to, or maintained in, a specific location. Lipid rafts are tightly-packed gel-like membrane microdomains enriched in sphingolipids and cholesterol." to "The processes by which membrane rafts are transported to, or maintained in, a specific location. Membrane rafts are small (10-200 nm), heretogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes."
* Added definition dbxref PMID:16645198 to GO:0051665
* Deleted synonym "establishment and maintenance of lipid raft localization" from GO:0051665
* Added synonym "establishment and maintenance of membrane raft localization" to GO:0051665
* Changed synonym scope of GO:0051665 from "Related" to "Exact"
* Added synonym "lipid raft localization" to GO:0051665
* Changed synonym scope of GO:0051665 from "Related" to "Exact"

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