[Go-diff] GO update 02/29/2008

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_edit.obo version 5.717 by 5.719

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Deleted GO:0007221 --OBO_REL:is_a--> GO:0045944
* Copied GO:0007221 to GO:0010552 with type OBO_REL:is_a
* Deleted GO:0007329 --OBO_REL:is_a--> GO:0045944
* Deleted GO:0007357 --OBO_REL:is_a--> GO:0043193
* Copied GO:0007357 to GO:0010552 with type OBO_REL:is_a
* Deleted GO:0007360 --OBO_REL:is_a--> GO:0043193
* Copied GO:0007360 to GO:0010552 with type OBO_REL:is_a
* Deleted GO:0007363 --OBO_REL:is_a--> GO:0043193
* Copied GO:0007363 to GO:0010552 with type OBO_REL:is_a
* Changed name of GO:0008634 from "negative regulation of survival gene product activity" to "negative regulation of survival gene product expression"
* Changed definition of GO:0008634 from "Any process that stops, prevents or reduces the frequency, rate or extent of survival gene product activity; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level." to "Any process that stops, prevents or reduces the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level."
* Added definition dbxref GOC:dph to GO:0008634
* Added definition dbxref GOC:tb to GO:0008634
* Added synonym "negative regulation of survival gene product activity" to GO:0008634
* Added general dbxref GOC:tb to synonym negative regulation of survival gene product activity of GO:0008634
* Added general dbxref GOC:dph to synonym negative regulation of survival gene product activity of GO:0008634
* Changed synonym scope of GO:0008634 from "Related" to "Exact"
* Copied GO:0008634 to GO:0048519 with type OBO_REL:is_a
* Copied GO:0010551 to GO:0032583 with type OBO_REL:is_a
* Copied GO:0010552 to GO:0043193 with type OBO_REL:is_a
* Copied GO:0010552 to GO:0045944 with type OBO_REL:is_a
* Copied GO:0010553 to GO:0032582 with type OBO_REL:is_a
* Copied GO:0014729 to GO:0065008 with type OBO_REL:is_a
* Copied GO:0014810 to GO:0045989 with type OBO_REL:is_a
* Copied GO:0014811 to GO:0045988 with type OBO_REL:is_a
* Changed name of GO:0014880 from "regulation of muscle filament sliding involved in the regulation of the velocity of shortening in skeletal muscle contraction" to "regulation of muscle filament sliding involved in regulation of the velocity of shortening in skeletal muscle contraction"
* Added definition dbxref GOC:dph to GO:0014880
* Added definition dbxref GOC:tb to GO:0014880
* Added definition dbxref GOC:dph to GO:0014881
* Added definition dbxref GOC:tb to GO:0014881
* Copied GO:0014881 to GO:0065008 with type OBO_REL:is_a
* Added definition dbxref GOC:dph to GO:0014882
* Added definition dbxref GOC:tb to GO:0014882
* Copied GO:0014882 to GO:0065008 with type OBO_REL:is_a
* Changed name of GO:0014915 from "regulation of filament sliding speed involved in regulation of the velocity of shortening in skeletal muscle contraction" to "regulation of muscle filament sliding speed involved in regulation of the velocity of shortening in skeletal muscle contraction"
* Added definition dbxref GOC:dph to GO:0014915
* Added definition dbxref GOC:tb to GO:0014915
* Changed name of GO:0021909 from "regulation of transcription from RNA polymerase II promoter in spinal cord anterior-posterior patterning" to "regulation of transcription from RNA polymerase II promoter involved in spinal cord anterior-posterior patterning"
* Changed name of GO:0031446 from "regulation of fast-twitch skeletal muscle contraction" to "regulation of fast-twitch skeletal muscle fiber contraction"
* Added definition dbxref GOC:dph to GO:0031446
* Added definition dbxref GOC:tb to GO:0031446
* Added synonym "regulation of fast-twitch skeletal muscle contraction" to GO:0031446
* Added general dbxref GOC:tb to synonym regulation of fast-twitch skeletal muscle contraction of GO:0031446
* Added general dbxref GOC:dph to synonym regulation of fast-twitch skeletal muscle contraction of GO:0031446
* Changed synonym scope of GO:0031446 from "Related" to "Exact"
* Changed name of GO:0031447 from "negative regulation of fast-twitch skeletal muscle contraction" to "negative regulation of fast-twitch skeletal muscle fiber contraction"
* Added definition dbxref GOC:dph to GO:0031447
* Added definition dbxref GOC:tb to GO:0031447
* Added synonym "negative regulation of fast-twitch skeletal muscle contraction" to GO:0031447
* Added general dbxref GOC:tb to synonym negative regulation of fast-twitch skeletal muscle contraction of GO:0031447
* Added general dbxref GOC:dph to synonym negative regulation of fast-twitch skeletal muscle contraction of GO:0031447
* Changed synonym scope of GO:0031447 from "Related" to "Exact"
* Changed name of GO:0031448 from "positive regulation of fast-twitch skeletal muscle contraction" to "positive regulation of fast-twitch skeletal muscle fiber contraction"
* Added definition dbxref GOC:dph to GO:0031448
* Added definition dbxref GOC:tb to GO:0031448
* Added synonym "positive regulation of fast-twitch skeletal muscle contraction" to GO:0031448
* Added general dbxref GOC:tb to synonym positive regulation of fast-twitch skeletal muscle contraction of GO:0031448
* Added general dbxref GOC:dph to synonym positive regulation of fast-twitch skeletal muscle contraction of GO:0031448
* Changed synonym scope of GO:0031448 from "Related" to "Exact"
* Changed name of GO:0031449 from "regulation of slow-twitch skeletal muscle contraction" to "regulation of slow-twitch skeletal muscle fiber contraction"
* Added definition dbxref GOC:dph to GO:0031449
* Added definition dbxref GOC:tb to GO:0031449
* Added synonym "regulation of slow-twitch skeletal muscle contraction" to GO:0031449
* Added general dbxref GOC:tb to synonym regulation of slow-twitch skeletal muscle contraction of GO:0031449
* Added general dbxref GOC:dph to synonym regulation of slow-twitch skeletal muscle contraction of GO:0031449
* Changed synonym scope of GO:0031449 from "Related" to "Exact"
* Changed name of GO:0031450 from "negative regulation of slow-twitch skeletal muscle contraction" to "negative regulation of slow-twitch skeletal muscle fiber contraction"
* Added definition dbxref GOC:dph to GO:0031450
* Added definition dbxref GOC:tb to GO:0031450
* Added synonym "negative regulation of slow-twitch skeletal muscle contraction" to GO:0031450
* Added general dbxref GOC:tb to synonym negative regulation of slow-twitch skeletal muscle contraction of GO:0031450
* Added general dbxref GOC:dph to synonym negative regulation of slow-twitch skeletal muscle contraction of GO:0031450
* Changed synonym scope of GO:0031450 from "Related" to "Exact"
* Changed name of GO:0031451 from "positive regulation of slow-twitch skeletal muscle contraction" to "positive regulation of slow-twitch skeletal muscle fiber contraction"
* Added definition dbxref GOC:dph to GO:0031451
* Added definition dbxref GOC:tb to GO:0031451
* Added synonym "positive regulation of slow-twitch skeletal muscle contraction" to GO:0031451
* Added general dbxref GOC:tb to synonym positive regulation of slow-twitch skeletal muscle contraction of GO:0031451
* Added general dbxref GOC:dph to synonym positive regulation of slow-twitch skeletal muscle contraction of GO:0031451
* Changed synonym scope of GO:0031451 from "Related" to "Exact"
* Changed name of GO:0031644 from "regulation of neurological process" to "regulation of neurological system process"
* Added definition dbxref GOC:dph to GO:0031644
* Added definition dbxref GOC:tb to GO:0031644
* Added synonym "regulation of neurological process" to GO:0031644
* Added general dbxref GOC:tb to synonym regulation of neurological process of GO:0031644
* Added general dbxref GOC:dph to synonym regulation of neurological process of GO:0031644
* Changed synonym scope of GO:0031644 from "Related" to "Exact"
* Changed name of GO:0031645 from "negative regulation of neurological process" to "negative regulation of neurological system process"
* Added definition dbxref GOC:dph to GO:0031645
* Added definition dbxref GOC:tb to GO:0031645
* Added synonym "negative regulation of neurological process" to GO:0031645
* Added general dbxref GOC:tb to synonym negative regulation of neurological process of GO:0031645
* Added general dbxref GOC:dph to synonym negative regulation of neurological process of GO:0031645
* Changed synonym scope of GO:0031645 from "Related" to "Exact"
* Copied GO:0031645 to GO:0051241 with type OBO_REL:is_a
* Changed name of GO:0031646 from "positive regulation of neurological process" to "positive regulation of neurological system process"
* Added definition dbxref GOC:dph to GO:0031646
* Added definition dbxref GOC:tb to GO:0031646
* Added synonym "positive regulation of neurological process" to GO:0031646
* Added general dbxref GOC:tb to synonym positive regulation of neurological process of GO:0031646
* Added general dbxref GOC:dph to synonym positive regulation of neurological process of GO:0031646
* Changed synonym scope of GO:0031646 from "Related" to "Exact"
* Copied GO:0031646 to GO:0051240 with type OBO_REL:is_a
* Deleted GO:0031916 --OBO_REL:is_a--> GO:0050804
* Copied GO:0031916 to GO:0048167 with type OBO_REL:is_a
* Deleted GO:0031917 --OBO_REL:is_a--> GO:0050805
* Copied GO:0031917 to GO:0031914 with type OBO_REL:is_a
* Deleted GO:0031918 --OBO_REL:is_a--> GO:0050806
* Copied GO:0031918 to GO:0031915 with type OBO_REL:is_a
* Changed name of GO:0032080 from "negative regulation of Type I restriction endodeoxyribonuclease activity" to "negative regulation of Type I site-specific deoxyribonuclease activity"
* Added definition dbxref GOC:dph to GO:0032080
* Added definition dbxref GOC:tb to GO:0032080
* Added synonym "negative regulation of Type I restriction endodeoxyribonuclease activity" to GO:0032080
* Added general dbxref GOC:tb to synonym negative regulation of Type I restriction endodeoxyribonuclease activity of GO:0032080
* Added general dbxref GOC:dph to synonym negative regulation of Type I restriction endodeoxyribonuclease activity of GO:0032080
* Changed synonym scope of GO:0032080 from "Related" to "Exact"
* Changed name of GO:0032081 from "negative regulation of Type II restriction endodeoxyribonuclease activity" to "negative regulation of Type II site-specific deoxyribonuclease activity"
* Added definition dbxref GOC:dph to GO:0032081
* Added definition dbxref GOC:tb to GO:0032081
* Added synonym "negative regulation of Type II restriction endodeoxyribonuclease activity" to GO:0032081
* Added general dbxref GOC:tb to synonym negative regulation of Type II restriction endodeoxyribonuclease activity of GO:0032081
* Added general dbxref GOC:dph to synonym negative regulation of Type II restriction endodeoxyribonuclease activity of GO:0032081
* Changed synonym scope of GO:0032081 from "Related" to "Exact"
* Changed name of GO:0032082 from "negative regulation of Type III restriction endodeoxyribonuclease activity" to "negative regulation of Type III site-specific deoxyribonuclease activity"
* Added definition dbxref GOC:dph to GO:0032082
* Added definition dbxref GOC:tb to GO:0032082
* Added synonym "negative regulation of Type III restriction endodeoxyribonuclease activity" to GO:0032082
* Added general dbxref GOC:tb to synonym negative regulation of Type III restriction endodeoxyribonuclease activity of GO:0032082
* Added general dbxref GOC:dph to synonym negative regulation of Type III restriction endodeoxyribonuclease activity of GO:0032082
* Changed synonym scope of GO:0032082 from "Related" to "Exact"
* Changed name of GO:0032083 from "negative regulation of Type IV restriction endodeoxyribonuclease activity" to "negative regulation of Type IV site-specific deoxyribonuclease activity"
* Added definition dbxref GOC:dph to GO:0032083
* Added definition dbxref GOC:tb to GO:0032083
* Added synonym "negative regulation of Type IV restriction endodeoxyribonuclease activity" to GO:0032083
* Added general dbxref GOC:tb to synonym negative regulation of Type IV restriction endodeoxyribonuclease activity of GO:0032083
* Added general dbxref GOC:dph to synonym negative regulation of Type IV restriction endodeoxyribonuclease activity of GO:0032083
* Changed synonym scope of GO:0032083 from "Related" to "Exact"
* Added definition dbxref GOC:dph to GO:0032972
* Added definition dbxref GOC:tb to GO:0032972
* Copied GO:0032972 to GO:0065008 with type OBO_REL:is_a
* Copied GO:0033696 to GO:0031452 with type OBO_REL:is_a
* Copied GO:0033697 to GO:0031453 with type OBO_REL:is_a
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"
* Deleted GO:0034242 --OBO_REL:is_a--> GO:0051130
* Copied GO:0034242 to GO:0051129 with type OBO_REL:is_a
* Deleted GO:0035104 --OBO_REL:is_a--> GO:0043193
* Copied GO:0035104 to GO:0010552 with type OBO_REL:is_a
* Changed name of GO:0045468 from "R8 cell spacing in compound eye" to "regulation of R8 cell spacing in compound eye"
* Added definition dbxref GOC:dph to GO:0045468
* Added definition dbxref GOC:tb to GO:0045468
* Added synonym "R8 cell spacing in compound eye" to GO:0045468
* Added general dbxref GOC:tb to synonym R8 cell spacing in compound eye of GO:0045468
* Added general dbxref GOC:dph to synonym R8 cell spacing in compound eye of GO:0045468
* Changed synonym scope of GO:0045468 from "Related" to "Exact"
* Copied GO:0045468 to GO:0065008 with type OBO_REL:is_a
* Changed name of GO:0045469 from "negative regulation of R8 spacing" to "negative regulation of R8 cell spacing in compound eye"
* Changed definition of GO:0045469 from "Any process that stops or prevents the correct R8 spacing pattern." to "Any process that stops or prevents the correct R8 cell spacing pattern in a compound eye."
* Added definition dbxref GOC:dph to GO:0045469
* Added definition dbxref GOC:tb to GO:0045469
* Added synonym "R8 cell spacing in compound eye" to GO:0045469
* Added general dbxref GOC:tb to synonym R8 cell spacing in compound eye of GO:0045469
* Added general dbxref GOC:dph to synonym R8 cell spacing in compound eye of GO:0045469
* Changed synonym scope of GO:0045469 from "Related" to "Exact"
* Changed name of GO:0045470 from "R8-mediated photoreceptor organization" to "R8 cell-mediated photoreceptor organization"
* Changed name of GO:0045677 from "negative regulation of R7 differentiation" to "negative regulation of R7 cell differentiation"
* Changed definition of GO:0045677 from "Any process that stops, prevents or reduces the frequency, rate or extent of R7 differentiation." to "Any process that stops, prevents or reduces the frequency, rate or extent of R7cell differentiation."
* Added definition dbxref GOC:dph to GO:0045677
* Added definition dbxref GOC:tb to GO:0045677
* Added synonym "negative regulation of R7 differentiation" to GO:0045677
* Added general dbxref GOC:tb to synonym negative regulation of R7 differentiation of GO:0045677
* Added general dbxref GOC:dph to synonym negative regulation of R7 differentiation of GO:0045677
* Changed synonym scope of GO:0045677 from "Related" to "Exact"
* Changed name of GO:0045678 from "positive regulation of R7 differentiation" to "positive regulation of R7 cell differentiation"
* Changed definition of GO:0045678 from "Any process that activates or increases the frequency, rate or extent of R7 differentiation." to "Any process that activates or increases the frequency, rate or extent of R7 cell differentiation."
* Added definition dbxref GOC:dph to GO:0045678
* Added definition dbxref GOC:tb to GO:0045678
* Added synonym "positive regulation of R7 differentiation" to GO:0045678
* Added general dbxref GOC:tb to synonym positive regulation of R7 differentiation of GO:0045678
* Added general dbxref GOC:dph to synonym positive regulation of R7 differentiation of GO:0045678
* Changed synonym scope of GO:0045678 from "Related" to "Exact"
* Changed name of GO:0045680 from "negative regulation of R8 differentiation" to "negative regulation of R8 cell differentiation"
* Changed definition of GO:0045680 from "Any process that stops, prevents or reduces the frequency, rate or extent of R8 differentiation." to "Any process that stops, prevents or reduces the frequency, rate or extent of R8 cell differentiation."
* Added definition dbxref GOC:dph to GO:0045680
* Added definition dbxref GOC:tb to GO:0045680
* Added synonym "negative regulation of R8 differentiation" to GO:0045680
* Added general dbxref GOC:tb to synonym negative regulation of R8 differentiation of GO:0045680
* Added general dbxref GOC:dph to synonym negative regulation of R8 differentiation of GO:0045680
* Changed synonym scope of GO:0045680 from "Related" to "Exact"
* Changed name of GO:0045681 from "positive regulation of R8 differentiation" to "positive regulation of R8 cell differentiation"
* Changed definition of GO:0045681 from "Any process that activates or increases the frequency, rate or extent of R8 differentiation." to "Any process that activates or increases the frequency, rate or extent of R8 cell differentiation."
* Added definition dbxref GOC:dph to GO:0045681
* Added definition dbxref GOC:tb to GO:0045681
* Added synonym "positive regulation of R8 differentiation" to GO:0045681
* Added general dbxref GOC:tb to synonym positive regulation of R8 differentiation of GO:0045681
* Added general dbxref GOC:dph to synonym positive regulation of R8 differentiation of GO:0045681
* Changed synonym scope of GO:0045681 from "Related" to "Exact"
* Changed name of GO:0045748 from "positive regulation of R8 spacing" to "positive regulation of R8 cell spacing in compound eye"
* Changed definition of GO:0045748 from "Any process that activates or enforces the correct R8 spacing." to "Any process that activates or enforces the correct R8 cell spacing in a compound eye."
* Added definition dbxref GOC:dph to GO:0045748
* Added definition dbxref GOC:tb to GO:0045748
* Added synonym "positive regulation of R8 spacing" to GO:0045748
* Added general dbxref GOC:tb to synonym positive regulation of R8 spacing of GO:0045748
* Added general dbxref GOC:dph to synonym positive regulation of R8 spacing of GO:0045748
* Changed synonym scope of GO:0045748 from "Related" to "Exact"
* Changed name of GO:0045857 from "negative regulation of protein activity, epigenetic" to "negative regulation of molecular function, epigenetic"
* Changed definition of GO:0045857 from "Any epigenetic process that stops, prevents or reduces the rate of protein activity." to "Any heritable epigenetic process that stops, prevents or reduces the frequency, rate or extent of protein function by self-perpetuating conformational conversions of normal proteins in healthy cells. This is distinct from, though mechanistically analogous to, disease states associated with prion propagation and amyloidogenesis. A single protein, if it carries a glutamine/asparagine-rich ('prion') domain, can sometimes stably exist in at least two distinct physical states, each associated with a different phenotype; propagation of one of these traits is achieved by a self-perpetuating change in the protein from one form to the other, mediated by conformational changes in the glutamine/asparagine-rich domain. Prion domains are both modular and transferable to other proteins, on which they can confer a heritable epigenetic alteration of function; existing bioinformatics data indicate that they are rare in non-eukarya, but common in eukarya."
* Added definition dbxref GOC:dph to GO:0045857
* Added definition dbxref GOC:tb to GO:0045857
* Added synonym "negative regulation of protein activity, epigenetic" to GO:0045857
* Added general dbxref GOC:tb to synonym negative regulation of protein activity, epigenetic of GO:0045857
* Added general dbxref GOC:dph to synonym negative regulation of protein activity, epigenetic of GO:0045857
* Changed synonym scope of GO:0045857 from "Related" to "Exact"
* Changed name of GO:0045858 from "positive regulation of protein activity, epigenetic" to "positive regulation of molecular function, epigenetic"
* Changed definition of GO:0045858 from "Any epigenetic process that activates or increases the rate of protein activity." to "Any heritable epigenetic process that increases the frequency, rate or extent of protein function by self-perpetuating conformational conversions of normal proteins in healthy cells. This is distinct from, though mechanistically analogous to, disease states associated with prion propagation and amyloidogenesis. A single protein, if it carries a glutamine/asparagine-rich ('prion') domain, can sometimes stably exist in at least two distinct physical states, each associated with a different phenotype; propagation of one of these traits is achieved by a self-perpetuating change in the protein from one form to the other, mediated by conformational changes in the glutamine/asparagine-rich domain. Prion domains are both modular and transferable to other proteins, on which they can confer a heritable epigenetic alteration of function; existing bioinformatics data indicate that they are rare in non-eukarya, but common in eukarya."
* Added definition dbxref GOC:dph to GO:0045858
* Added definition dbxref GOC:tb to GO:0045858
* Added synonym "positive regulation of protein activity, epigenetic" to GO:0045858
* Added general dbxref GOC:tb to synonym positive regulation of protein activity, epigenetic of GO:0045858
* Added general dbxref GOC:dph to synonym positive regulation of protein activity, epigenetic of GO:0045858
* Changed synonym scope of GO:0045858 from "Related" to "Exact"
* Copied GO:0045871 to GO:0048519 with type OBO_REL:is_a
* Copied GO:0045872 to GO:0048518 with type OBO_REL:is_a
* Changed name of GO:0045885 from "positive regulation of survival gene product activity" to "positive regulation of survival gene product expression"
* Changed definition of GO:0045885 from "Any process that activates or increases the frequency, rate or extent of survival gene product activity; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level." to "Any process that activates or increases the frequency, rate or extent of survival gene product expression; survival gene products are those that antagonize the apoptotic program. Regulation can be at the transcriptional, translational, or posttranslational level."
* Added definition dbxref GOC:dph to GO:0045885
* Added definition dbxref GOC:tb to GO:0045885
* Added synonym "positive regulation of survival gene product activity" to GO:0045885
* Added general dbxref GOC:tb to synonym positive regulation of survival gene product activity of GO:0045885
* Added general dbxref GOC:dph to synonym positive regulation of survival gene product activity of GO:0045885
* Changed synonym scope of GO:0045885 from "Related" to "Exact"
* Copied GO:0045885 to GO:0048518 with type OBO_REL:is_a
* Copied GO:0045897 to GO:0045893 with type OBO_REL:is_a
* Deleted GO:0048167 --OBO_REL:is_a--> GO:0050803
* Copied GO:0048167 to GO:0050804 with type OBO_REL:is_a
* Copied GO:0051826 to GO:0051129 with type OBO_REL:is_a
* Copied GO:0051835 to GO:0051130 with type OBO_REL:is_a