From gocvs at genome.Stanford.EDU  Fri Jan  4 21:30:45 2008
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Fri, 4 Jan 2008 21:30:45 -0800 (PST)
Subject: [go-diff] GO update 01/04/2008
Message-ID: <200801050530.VAA07788@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.631 by 5.632

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034058
* Created object of type obo:TERM with id GO:0034059
* Created object of type obo:TERM with id GO:0034060
* Created object of type obo:TERM with id GO:0034061
* Created object of type obo:TERM with id GO:0034062
* Created object of type obo:TERM with id GO:0034063
* Created object of type obo:TERM with id GO:0034064
* Created object of type obo:TERM with id GO:0034121
* Created object of type obo:TERM with id GO:0034122
* Created object of type obo:TERM with id GO:0034123
* Created object of type obo:TERM with id GO:0034124
* Created object of type obo:TERM with id GO:0034125
* Created object of type obo:TERM with id GO:0034126
* Created object of type obo:TERM with id GO:0034127
* Created object of type obo:TERM with id GO:0034128
* Created object of type obo:TERM with id GO:0034129
* Created object of type obo:TERM with id GO:0034130
* Created object of type obo:TERM with id GO:0034131
* Created object of type obo:TERM with id GO:0034132
* Created object of type obo:TERM with id GO:0034133
* Created object of type obo:TERM with id GO:0034134
* Created object of type obo:TERM with id GO:0034135
* Created object of type obo:TERM with id GO:0034136
* Created object of type obo:TERM with id GO:0034137
* Created object of type obo:TERM with id GO:0034138
* Created object of type obo:TERM with id GO:0034139
* Created object of type obo:TERM with id GO:0034140
* Created object of type obo:TERM with id GO:0034141
* Created object of type obo:TERM with id GO:0034142
* Created object of type obo:TERM with id GO:0034143
* Created object of type obo:TERM with id GO:0034144
* Created object of type obo:TERM with id GO:0034145
* Created object of type obo:TERM with id GO:0034146
* Created object of type obo:TERM with id GO:0034147
* Created object of type obo:TERM with id GO:0034148
* Created object of type obo:TERM with id GO:0034149
* Created object of type obo:TERM with id GO:0034150
* Created object of type obo:TERM with id GO:0034151
* Created object of type obo:TERM with id GO:0034152
* Created object of type obo:TERM with id GO:0034153
* Created object of type obo:TERM with id GO:0034154
* Created object of type obo:TERM with id GO:0034155
* Created object of type obo:TERM with id GO:0034156
* Created object of type obo:TERM with id GO:0034157
* Created object of type obo:TERM with id GO:0034158
* Created object of type obo:TERM with id GO:0034159
* Created object of type obo:TERM with id GO:0034160
* Created object of type obo:TERM with id GO:0034161
* Created object of type obo:TERM with id GO:0034162
* Created object of type obo:TERM with id GO:0034163
* Created object of type obo:TERM with id GO:0034164
* Created object of type obo:TERM with id GO:0034165
* Created object of type obo:TERM with id GO:0034166
* Created object of type obo:TERM with id GO:0034167
* Created object of type obo:TERM with id GO:0034168
* Created object of type obo:TERM with id GO:0034169
* Created object of type obo:TERM with id GO:0034170
* Created object of type obo:TERM with id GO:0034171
* Created object of type obo:TERM with id GO:0034172
* Created object of type obo:TERM with id GO:0034173
* Created object of type obo:TERM with id GO:0034174
* Created object of type obo:TERM with id GO:0034175
* Created object of type obo:TERM with id GO:0034176
* Created object of type obo:TERM with id GO:0034177
* Created object of type obo:TERM with id GO:0034178
* Created object of type obo:TERM with id GO:0034179
* Created object of type obo:TERM with id GO:0034180
* Created object of type obo:TERM with id GO:0034181
* Populated new object GO:0034058 (macro)
  * Changed name of GO:0034058 from "<new term>" to "endosomal vesicle fusion"
  * Set definition of GO:0034058 to "The homotypic fusion of endocytic vesicles to form or add to an early endosome."
  * Added definition dbxref PMID:11964142 to GO:0034058
  * Added definition dbxref PMID:9422733 to GO:0034058
  * Added synonym "endosome vesicle fusion" to GO:0034058
  * Changed synonym scope of GO:0034058 from "Related" to "Exact"
  * Copied GO:0034058 to GO:0006906 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034058
* Populated new object GO:0034059 (macro)
  * Changed name of GO:0034059 from "<new term>" to "response to anoxia"
  * Added comment "Note that this term should not be confused with 'response to hypoxia ; GO:0001666'."
  * Set definition of GO:0034059 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating oxygen deprivation."
  * Added definition dbxref GOC:kva to GO:0034059
  * Added synonym "response to anoxic stress" to GO:0034059
  * Changed synonym scope of GO:0034059 from "Related" to "Exact"
  * Copied GO:0034059 to GO:0006950 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034059
* Populated new object GO:0034060 (macro)
  * Changed name of GO:0034060 from "<new term>" to "cyanelle stroma"
  * Set definition of GO:0034060 to "The space enclosed by the double membrane of a cyanelle."
  * Added definition dbxref GOC:rph to GO:0034060
  * Copied GO:0034060 to GO:0009842 with type part_of
  * Copied GO:0034060 to GO:0009532 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034060
* Populated new object GO:0034061 (macro)
  * Changed name of GO:0034061 from "<new term>" to "DNA polymerase activity"
  * Set definition of GO:0034061 to "Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a nucleic acid template and primer."
  * Added definition dbxref EC:2.7.7.7 to GO:0034061
  * Added definition dbxref GOC:mah to GO:0034061
  * Added synonym "deoxynucleate polymerase activity" to GO:0034061
  * Added general dbxref EC:2.7.7.7 to synonym deoxynucleate polymerase activity of GO:0034061
  * Changed synonym scope of GO:0034061 from "Related" to "Exact"
  * Added synonym "deoxyribonucleate nucleotidyltransferase activity" to GO:0034061
  * Added general dbxref EC:2.7.7.7 to synonym deoxyribonucleate nucleotidyltransferase activity of GO:0034061
  * Changed synonym scope of GO:0034061 from "Related" to "Exact"
  * Added synonym "deoxyribonucleic acid polymerase activity" to GO:0034061
  * Added general dbxref EC:2.7.7.7 to synonym deoxyribonucleic acid polymerase activity of GO:0034061
  * Changed synonym scope of GO:0034061 from "Related" to "Exact"
  * Added synonym "deoxyribonucleic polymerase activity" to GO:0034061
  * Added general dbxref EC:2.7.7.7 to synonym deoxyribonucleic polymerase activity of GO:0034061
  * Changed synonym scope of GO:0034061 from "Related" to "Exact"
  * Added synonym "DNA nucleotidyltransferase activity" to GO:0034061
  * Added general dbxref EC:2.7.7.7 to synonym DNA nucleotidyltransferase activity of GO:0034061
  * Changed synonym scope of GO:0034061 from "Related" to "Exact"
  * Added synonym "DNA polymerase activity" to GO:0034061
  * Added general dbxref EC:2.7.7.7 to synonym DNA polymerase activity of GO:0034061
  * Changed synonym scope of GO:0034061 from "Related" to "Exact"
  * Copied GO:0034061 to GO:0016779 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034061
* Populated new object GO:0034062 (macro)
  * Changed name of GO:0034062 from "<new term>" to "RNA polymerase activity"
  * Set definition of GO:0034062 to "Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template."
  * Added definition dbxref EC:2.7.7.6 to GO:0034062
  * Added definition dbxref GOC:mah to GO:0034062
  * Added synonym "C ribonucleic acid formation factors" to GO:0034062
  * Added general dbxref EC:2.7.7.6 to synonym C ribonucleic acid formation factors of GO:0034062
  * Added synonym "C RNA formation factors" to GO:0034062
  * Added general dbxref EC:2.7.7.6 to synonym C RNA formation factors of GO:0034062
  * Added synonym "ribonucleate nucleotidyltransferase activity" to GO:0034062
  * Added general dbxref EC:2.7.7.6 to synonym ribonucleate nucleotidyltransferase activity of GO:0034062
  * Changed synonym scope of GO:0034062 from "Related" to "Exact"
  * Added synonym "ribonucleate polymerase activity" to GO:0034062
  * Added general dbxref EC:2.7.7.6 to synonym ribonucleate polymerase activity of GO:0034062
  * Changed synonym scope of GO:0034062 from "Related" to "Exact"
  * Added synonym "ribonucleic acid nucleotidyltransferase" to GO:0034062
  * Added general dbxref EC:2.7.7.6 to synonym ribonucleic acid nucleotidyltransferase of GO:0034062
  * Changed synonym scope of GO:0034062 from "Related" to "Broad"
  * Added synonym "ribonucleic acid polymerase activity" to GO:0034062
  * Added general dbxref EC:2.7.7.6 to synonym ribonucleic acid polymerase activity of GO:0034062
  * Changed synonym scope of GO:0034062 from "Related" to "Exact"
  * Added synonym "ribonucleic acid transcriptase activity" to GO:0034062
  * Added general dbxref EC:2.7.7.6 to synonym ribonucleic acid transcriptase activity of GO:0034062
  * Changed synonym scope of GO:0034062 from "Related" to "Exact"
  * Added synonym "ribonucleic polymerase activity" to GO:0034062
  * Added general dbxref EC:2.7.7.6 to synonym ribonucleic polymerase activity of GO:0034062
  * Changed synonym scope of GO:0034062 from "Related" to "Exact"
  * Added synonym "ribonucleic transcriptase activity" to GO:0034062
  * Added general dbxref EC:2.7.7.6 to synonym ribonucleic transcriptase activity of GO:0034062
  * Changed synonym scope of GO:0034062 from "Related" to "Exact"
  * Added synonym "RNA nucleotidyltransferase activity" to GO:0034062
  * Added general dbxref EC:2.7.7.6 to synonym RNA nucleotidyltransferase activity of GO:0034062
  * Changed synonym scope of GO:0034062 from "Related" to "Exact"
  * Added synonym "RNA transcriptase activityy" to GO:0034062
  * Added general dbxref EC:2.7.7.6 to synonym RNA transcriptase activityy of GO:0034062
  * Changed synonym scope of GO:0034062 from "Related" to "Exact"
  * Added synonym "transcriptase" to GO:0034062
  * Added general dbxref EC:2.7.7.6 to synonym transcriptase of GO:0034062
  * Changed synonym scope of GO:0034062 from "Related" to "Broad"
  * Copied GO:0034062 to GO:0016779 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034062
* Populated new object GO:0034063 (macro)
  * Changed name of GO:0034063 from "<new term>" to "stress granule assembly"
  * Set definition of GO:0034063 to "The aggregation, arrangement and bonding together of proteins and RNA molecules to form a stress granule."
  * Added definition dbxref GOC:mah to GO:0034063
  * Added definition dbxref PMID:17392519 to GO:0034063
  * Copied GO:0034063 to GO:0022618 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034063
* Populated new object GO:0034064 (macro)
  * Changed name of GO:0034064 from "<new term>" to "Tor2-Mei2-Ste11 complex"
  * Set definition of GO:0034064 to "A protein complex that contains the transcription factor Ste11 and the RNA binding protein Mei2; involved in regulation of conjugation in fission yeast."
  * Added definition dbxref GOC:vw to GO:0034064
  * Added definition dbxref PMID:17046992 to GO:0034064
  * Copied GO:0034064 to GO:0043234 with type OBO_REL:is_a
  * Copied GO:0034064 to GO:0044428 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034064
* Populated new object GO:0034121 (macro)
  * Changed name of GO:0034121 from "<new term>" to "regulation of toll-like receptor signaling pathway"
  * Set definition of GO:0034121 to "Any process that modulates the frequency, rate, or extent of toll-like receptor signaling pathway."
  * Added definition dbxref GOC:add to GO:0034121
  * Added definition dbxref PMID:16551253 to GO:0034121
  * Added definition dbxref PMID:17328678 to GO:0034121
  * Added synonym "regulation of TLR signaling pathway" to GO:0034121
  * Changed synonym scope of GO:0034121 from "Related" to "Exact"
  * Added synonym "regulation of toll-like receptor signalling pathway" to GO:0034121
  * Changed synonym scope of GO:0034121 from "Related" to "Exact"
  * Copied GO:0034121 to GO:0002224 with type part_of
  * Copied GO:0034121 to GO:0009966 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034121
* Populated new object GO:0034122 (macro)
  * Changed name of GO:0034122 from "<new term>" to "negative regulation of toll-like receptor signaling pathway"
  * Set definition of GO:0034122 to "Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor signaling pathway."
  * Added definition dbxref GOC:add to GO:0034122
  * Added definition dbxref PMID:16551253 to GO:0034122
  * Added definition dbxref PMID:17328678 to GO:0034122
  * Added synonym "negative regulation of TLR signaling pathway" to GO:0034122
  * Changed synonym scope of GO:0034122 from "Related" to "Exact"
  * Added synonym "negative regulation of toll-like receptor signalling pathway" to GO:0034122
  * Changed synonym scope of GO:0034122 from "Related" to "Exact"
  * Copied GO:0034122 to GO:0034121 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034122
* Populated new object GO:0034123 (macro)
  * Changed name of GO:0034123 from "<new term>" to "positive regulation of toll-like receptor signaling pathway"
  * Set definition of GO:0034123 to "Any process that activates or increases the frequency, rate, or extent of toll-like receptor signaling pathway."
  * Added definition dbxref GOC:add to GO:0034123
  * Added definition dbxref PMID:16551253 to GO:0034123
  * Added definition dbxref PMID:17328678 to GO:0034123
  * Added synonym "positive regulation of TLR signaling pathway" to GO:0034123
  * Changed synonym scope of GO:0034123 from "Related" to "Exact"
  * Added synonym "positive regulation of toll-like receptor signalling pathway" to GO:0034123
  * Changed synonym scope of GO:0034123 from "Related" to "Exact"
  * Copied GO:0034123 to GO:0034121 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034123
* Populated new object GO:0034124 (macro)
  * Changed name of GO:0034124 from "<new term>" to "regulation of MyD88-dependent toll-like receptor signaling pathway"
  * Set definition of GO:0034124 to "Any process that modulates the frequency, rate, or extent of MyD88-dependent toll-like receptor signaling pathway."
  * Added definition dbxref GOC:add to GO:0034124
  * Added definition dbxref PMID:16551253 to GO:0034124
  * Added definition dbxref PMID:17328678 to GO:0034124
  * Added synonym "regulation ofMyD88-dependent TLR signaling pathway" to GO:0034124
  * Changed synonym scope of GO:0034124 from "Related" to "Exact"
  * Added synonym "regulation ofMyD88-dependent toll-like receptor signalling pathway" to GO:0034124
  * Changed synonym scope of GO:0034124 from "Related" to "Exact"
  * Copied GO:0034124 to GO:0002755 with type part_of
  * Copied GO:0034124 to GO:0034121 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034124
* Populated new object GO:0034125 (macro)
  * Changed name of GO:0034125 from "<new term>" to "negative regulation of MyD88-dependent toll-like receptor signaling pathway"
  * Set definition of GO:0034125 to "Any process that stops, prevents, or reduces the frequency, rate, or extent of MyD88-dependent toll-like receptor signaling pathway."
  * Added definition dbxref GOC:add to GO:0034125
  * Added definition dbxref PMID:16551253 to GO:0034125
  * Added definition dbxref PMID:17328678 to GO:0034125
  * Added synonym "negative regulation of MyD88-dependent TLR signaling pathway" to GO:0034125
  * Changed synonym scope of GO:0034125 from "Related" to "Exact"
  * Added synonym "negative regulation of MyD88-dependent toll-like receptor signalling pathway" to GO:0034125
  * Changed synonym scope of GO:0034125 from "Related" to "Exact"
  * Copied GO:0034125 to GO:0034122 with type OBO_REL:is_a
  * Copied GO:0034125 to GO:0034124 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034125
* Populated new object GO:0034126 (macro)
  * Changed name of GO:0034126 from "<new term>" to "positive regulation of MyD88-dependent toll-like receptor signaling pathway"
  * Set definition of GO:0034126 to "Any process that activates or increases the frequency, rate, or extent of MyD88-dependent toll-like receptor signaling pathway."
  * Added definition dbxref GOC:add to GO:0034126
  * Added definition dbxref PMID:16551253 to GO:0034126
  * Added definition dbxref PMID:17328678 to GO:0034126
  * Added synonym "positive regulation of MyD88-dependent TLR signaling pathway" to GO:0034126
  * Changed synonym scope of GO:0034126 from "Related" to "Exact"
  * Added synonym "positive regulation of MyD88-dependent toll-like receptor signalling pathway" to GO:0034126
  * Changed synonym scope of GO:0034126 from "Related" to "Exact"
  * Copied GO:0034126 to GO:0034124 with type OBO_REL:is_a
  * Copied GO:0034126 to GO:0034123 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034126
* Populated new object GO:0034127 (macro)
  * Changed name of GO:0034127 from "<new term>" to "regulation of MyD88-independent toll-like receptor signaling pathway"
  * Set definition of GO:0034127 to "Any process that modulates the frequency, rate, or extent of MyD88-independent toll-like receptor signaling pathway."
  * Added definition dbxref GOC:add to GO:0034127
  * Added definition dbxref PMID:16551253 to GO:0034127
  * Added definition dbxref PMID:17328678 to GO:0034127
  * Added synonym "regulation ofMyD88-independent TLR signaling pathway" to GO:0034127
  * Changed synonym scope of GO:0034127 from "Related" to "Exact"
  * Added synonym "regulation ofMyD88-independent toll-like receptor signalling pathway" to GO:0034127
  * Changed synonym scope of GO:0034127 from "Related" to "Exact"
  * Copied GO:0034127 to GO:0034121 with type OBO_REL:is_a
  * Copied GO:0034127 to GO:0002756 with type part_of
  * Assigned namespace "biological_process" to GO:0034127
* Populated new object GO:0034128 (macro)
  * Changed name of GO:0034128 from "<new term>" to "negative regulation of MyD88-independent toll-like receptor signaling pathway"
  * Set definition of GO:0034128 to "Any process that stops, prevents, or reduces the frequency, rate, or extent of MyD88-independent toll-like receptor signaling pathway."
  * Added definition dbxref GOC:add to GO:0034128
  * Added definition dbxref PMID:16551253 to GO:0034128
  * Added definition dbxref PMID:17328678 to GO:0034128
  * Added synonym "negative regulation of MyD88-independent TLR signaling pathway" to GO:0034128
  * Changed synonym scope of GO:0034128 from "Related" to "Exact"
  * Added synonym "negative regulation of MyD88-independent toll-like receptor signalling pathway" to GO:0034128
  * Changed synonym scope of GO:0034128 from "Related" to "Exact"
  * Copied GO:0034128 to GO:0034122 with type OBO_REL:is_a
  * Copied GO:0034128 to GO:0034127 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034128
* Populated new object GO:0034129 (macro)
  * Changed name of GO:0034129 from "<new term>" to "positive regulation of MyD88-independent toll-like receptor signaling pathway"
  * Set definition of GO:0034129 to "Any process that activates or increases the frequency, rate, or extent of MyD88-independent toll-like receptor signaling pathway."
  * Added definition dbxref GOC:add to GO:0034129
  * Added definition dbxref PMID:16551253 to GO:0034129
  * Added definition dbxref PMID:17328678 to GO:0034129
  * Added synonym "positive regulation of MyD88-independent TLR signaling pathway" to GO:0034129
  * Changed synonym scope of GO:0034129 from "Related" to "Exact"
  * Added synonym "positive regulation of MyD88-independent toll-like receptor" to GO:0034129
  * Changed synonym scope of GO:0034129 from "Related" to "Exact"
  * Copied GO:0034129 to GO:0034127 with type OBO_REL:is_a
  * Copied GO:0034129 to GO:0034123 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034129
* Populated new object GO:0034130 (macro)
  * Changed name of GO:0034130 from "<new term>" to "toll-like receptor 1 signaling pathway"
  * Set definition of GO:0034130 to "Any series of molecular signals generated as a consequence of binding to toll-like receptor 1."
  * Added definition dbxref GOC:add to GO:0034130
  * Added definition dbxref PMID:16551253 to GO:0034130
  * Added definition dbxref PMID:17328678 to GO:0034130
  * Added synonym "TLR1 signaling pathway" to GO:0034130
  * Changed synonym scope of GO:0034130 from "Related" to "Exact"
  * Added synonym "toll-like receptor 1 signalling pathway" to GO:0034130
  * Changed synonym scope of GO:0034130 from "Related" to "Exact"
  * Copied GO:0034130 to GO:0002224 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034130
* Populated new object GO:0034131 (macro)
  * Changed name of GO:0034131 from "<new term>" to "regulation of toll-like receptor 1 signaling pathway"
  * Set definition of GO:0034131 to "Any process that modulates the frequency, rate, or extent of toll-like receptor 1 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034131
  * Added definition dbxref PMID:16551253 to GO:0034131
  * Added definition dbxref PMID:17328678 to GO:0034131
  * Added synonym "regulation of TLR1 signaling pathway" to GO:0034131
  * Changed synonym scope of GO:0034131 from "Related" to "Exact"
  * Added synonym "regulation of toll-like receptor 1 signalling pathway" to GO:0034131
  * Changed synonym scope of GO:0034131 from "Related" to "Exact"
  * Copied GO:0034131 to GO:0034121 with type OBO_REL:is_a
  * Copied GO:0034131 to GO:0034130 with type part_of
  * Assigned namespace "biological_process" to GO:0034131
* Populated new object GO:0034132 (macro)
  * Changed name of GO:0034132 from "<new term>" to "negative regulation of toll-like receptor 1 signaling pathway"
  * Set definition of GO:0034132 to "Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 1 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034132
  * Added definition dbxref PMID:16551253 to GO:0034132
  * Added definition dbxref PMID:17328678 to GO:0034132
  * Added synonym "negative regulation of TLR1 signaling pathway" to GO:0034132
  * Changed synonym scope of GO:0034132 from "Related" to "Exact"
  * Added synonym "negative regulation of toll-like receptor 1 signalling pathway" to GO:0034132
  * Changed synonym scope of GO:0034132 from "Related" to "Exact"
  * Copied GO:0034132 to GO:0034131 with type OBO_REL:is_a
  * Copied GO:0034132 to GO:0034122 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034132
* Populated new object GO:0034133 (macro)
  * Changed name of GO:0034133 from "<new term>" to "positive regulation of toll-like receptor 1 signaling pathway"
  * Set definition of GO:0034133 to "Any process that activates or increases the frequency, rate, or extent of toll-like receptor 1 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034133
  * Added definition dbxref PMID:16551253 to GO:0034133
  * Added definition dbxref PMID:17328678 to GO:0034133
  * Added synonym "positive regulation of TLR1 signaling pathway" to GO:0034133
  * Changed synonym scope of GO:0034133 from "Related" to "Exact"
  * Added synonym "positive regulation of toll-like receptor 1 signalling pathway" to GO:0034133
  * Changed synonym scope of GO:0034133 from "Related" to "Exact"
  * Copied GO:0034133 to GO:0034131 with type OBO_REL:is_a
  * Copied GO:0034133 to GO:0034123 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034133
* Populated new object GO:0034134 (macro)
  * Changed name of GO:0034134 from "<new term>" to "toll-like receptor 2 signaling pathway"
  * Set definition of GO:0034134 to "Any series of molecular signals generated as a consequence of binding to toll-like receptor 2."
  * Added definition dbxref GOC:add to GO:0034134
  * Added definition dbxref PMID:16551253 to GO:0034134
  * Added definition dbxref PMID:17328678 to GO:0034134
  * Added synonym "TLR2 signaling pathway" to GO:0034134
  * Changed synonym scope of GO:0034134 from "Related" to "Exact"
  * Added synonym "toll-like receptor 2 signalling pathway" to GO:0034134
  * Changed synonym scope of GO:0034134 from "Related" to "Exact"
  * Copied GO:0034134 to GO:0002224 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034134
* Populated new object GO:0034135 (macro)
  * Changed name of GO:0034135 from "<new term>" to "regulation of toll-like receptor 2 signaling pathway"
  * Set definition of GO:0034135 to "Any process that modulates the frequency, rate, or extent of toll-like receptor 2 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034135
  * Added definition dbxref PMID:16551253 to GO:0034135
  * Added definition dbxref PMID:17328678 to GO:0034135
  * Added synonym "regulation of TLR2 signaling pathway" to GO:0034135
  * Changed synonym scope of GO:0034135 from "Related" to "Exact"
  * Added synonym "regulation of toll-like receptor 2 signalling pathway" to GO:0034135
  * Changed synonym scope of GO:0034135 from "Related" to "Exact"
  * Copied GO:0034135 to GO:0034134 with type part_of
  * Copied GO:0034135 to GO:0034121 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034135
* Populated new object GO:0034136 (macro)
  * Changed name of GO:0034136 from "<new term>" to "negative regulation of toll-like receptor 2 signaling pathway"
  * Set definition of GO:0034136 to "Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 2 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034136
  * Added definition dbxref PMID:16551253 to GO:0034136
  * Added definition dbxref PMID:17328678 to GO:0034136
  * Added synonym "negative regulation of TLR2 signaling pathway" to GO:0034136
  * Changed synonym scope of GO:0034136 from "Related" to "Exact"
  * Added synonym "negative regulation of toll-like receptor 2 signalling pathway" to GO:0034136
  * Changed synonym scope of GO:0034136 from "Related" to "Exact"
  * Copied GO:0034136 to GO:0034135 with type OBO_REL:is_a
  * Copied GO:0034136 to GO:0034122 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034136
* Populated new object GO:0034137 (macro)
  * Changed name of GO:0034137 from "<new term>" to "positive regulation of toll-like receptor 2 signaling pathway"
  * Set definition of GO:0034137 to "Any process that activates or increases the frequency, rate, or extent of toll-like receptor 2 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034137
  * Added definition dbxref PMID:16551253 to GO:0034137
  * Added definition dbxref PMID:17328678 to GO:0034137
  * Added synonym "positive regulation of TLR2 signaling pathway" to GO:0034137
  * Changed synonym scope of GO:0034137 from "Related" to "Exact"
  * Added synonym "positive regulation of toll-like receptor 2 signalling pathway" to GO:0034137
  * Changed synonym scope of GO:0034137 from "Related" to "Exact"
  * Copied GO:0034137 to GO:0034123 with type OBO_REL:is_a
  * Copied GO:0034137 to GO:0034135 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034137
* Populated new object GO:0034138 (macro)
  * Changed name of GO:0034138 from "<new term>" to "toll-like receptor 3 signaling pathway"
  * Set definition of GO:0034138 to "Any series of molecular signals generated as a consequence of binding to toll-like receptor 3."
  * Added definition dbxref GOC:add to GO:0034138
  * Added definition dbxref PMID:16551253 to GO:0034138
  * Added definition dbxref PMID:17328678 to GO:0034138
  * Added synonym "TLR3 signaling pathway" to GO:0034138
  * Changed synonym scope of GO:0034138 from "Related" to "Exact"
  * Added synonym "toll-like receptor 3 signalling pathway" to GO:0034138
  * Changed synonym scope of GO:0034138 from "Related" to "Exact"
  * Copied GO:0034138 to GO:0002224 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034138
* Populated new object GO:0034139 (macro)
  * Changed name of GO:0034139 from "<new term>" to "regulation of toll-like receptor 3 signaling pathway"
  * Set definition of GO:0034139 to "Any process that modulates the frequency, rate, or extent of toll-like receptor 3 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034139
  * Added definition dbxref PMID:16551253 to GO:0034139
  * Added definition dbxref PMID:17328678 to GO:0034139
  * Added synonym "regulation of TLR3 signaling pathway" to GO:0034139
  * Changed synonym scope of GO:0034139 from "Related" to "Exact"
  * Added synonym "regulation of toll-like receptor 3 signalling pathway" to GO:0034139
  * Changed synonym scope of GO:0034139 from "Related" to "Exact"
  * Copied GO:0034139 to GO:0034121 with type OBO_REL:is_a
  * Copied GO:0034139 to GO:0034138 with type part_of
  * Assigned namespace "biological_process" to GO:0034139
* Populated new object GO:0034140 (macro)
  * Changed name of GO:0034140 from "<new term>" to "negative regulation of toll-like receptor 3 signaling pathway"
  * Set definition of GO:0034140 to "Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 3 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034140
  * Added definition dbxref PMID:16551253 to GO:0034140
  * Added definition dbxref PMID:17328678 to GO:0034140
  * Added synonym "negative regulation of TLR3 signaling pathway" to GO:0034140
  * Changed synonym scope of GO:0034140 from "Related" to "Exact"
  * Added synonym "negative regulation of toll-like receptor 3 signalling pathway" to GO:0034140
  * Changed synonym scope of GO:0034140 from "Related" to "Exact"
  * Copied GO:0034140 to GO:0034122 with type OBO_REL:is_a
  * Copied GO:0034140 to GO:0034139 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034140
* Populated new object GO:0034141 (macro)
  * Changed name of GO:0034141 from "<new term>" to "positive regulation of toll-like receptor 3 signaling pathway"
  * Set definition of GO:0034141 to "Any process that activates or increases the frequency, rate, or extent of toll-like receptor 3 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034141
  * Added definition dbxref PMID:16551253 to GO:0034141
  * Added definition dbxref PMID:17328678 to GO:0034141
  * Added synonym "positive regulation of TLR3 signaling pathway" to GO:0034141
  * Changed synonym scope of GO:0034141 from "Related" to "Exact"
  * Added synonym "positive regulation of toll-like receptor 3 signalling pathway" to GO:0034141
  * Changed synonym scope of GO:0034141 from "Related" to "Exact"
  * Copied GO:0034141 to GO:0034123 with type OBO_REL:is_a
  * Copied GO:0034141 to GO:0034139 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034141
* Populated new object GO:0034142 (macro)
  * Changed name of GO:0034142 from "<new term>" to "toll-like receptor 4 signaling pathway"
  * Set definition of GO:0034142 to "Any series of molecular signals generated as a consequence of binding to toll-like receptor 4."
  * Added definition dbxref GOC:add to GO:0034142
  * Added definition dbxref PMID:16551253 to GO:0034142
  * Added definition dbxref PMID:17328678 to GO:0034142
  * Added synonym "TLR4 signaling pathway" to GO:0034142
  * Changed synonym scope of GO:0034142 from "Related" to "Exact"
  * Added synonym "toll-like receptor 4 signalling pathway" to GO:0034142
  * Changed synonym scope of GO:0034142 from "Related" to "Exact"
  * Copied GO:0034142 to GO:0002224 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034142
* Populated new object GO:0034143 (macro)
  * Changed name of GO:0034143 from "<new term>" to "regulation of toll-like receptor 4 signaling pathway"
  * Set definition of GO:0034143 to "Any process that modulates the frequency, rate, or extent of toll-like receptor 4 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034143
  * Added definition dbxref PMID:16551253 to GO:0034143
  * Added definition dbxref PMID:17328678 to GO:0034143
  * Added synonym "regulation of TLR4 signaling pathway" to GO:0034143
  * Changed synonym scope of GO:0034143 from "Related" to "Exact"
  * Added synonym "regulation of toll-like receptor 4 signalling pathway" to GO:0034143
  * Changed synonym scope of GO:0034143 from "Related" to "Exact"
  * Copied GO:0034143 to GO:0034121 with type OBO_REL:is_a
  * Copied GO:0034143 to GO:0034142 with type part_of
  * Assigned namespace "biological_process" to GO:0034143
* Populated new object GO:0034144 (macro)
  * Changed name of GO:0034144 from "<new term>" to "negative regulation of toll-like receptor 4 signaling pathway"
  * Set definition of GO:0034144 to "Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 4 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034144
  * Added definition dbxref PMID:16551253 to GO:0034144
  * Added definition dbxref PMID:17328678 to GO:0034144
  * Added synonym "negative regulation of TLR4 signaling pathway" to GO:0034144
  * Changed synonym scope of GO:0034144 from "Related" to "Exact"
  * Added synonym "negative regulation of toll-like receptor 4 signalling pathway" to GO:0034144
  * Changed synonym scope of GO:0034144 from "Related" to "Exact"
  * Copied GO:0034144 to GO:0034122 with type OBO_REL:is_a
  * Copied GO:0034144 to GO:0034143 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034144
* Populated new object GO:0034145 (macro)
  * Changed name of GO:0034145 from "<new term>" to "positive regulation of toll-like receptor 4 signaling pathway"
  * Set definition of GO:0034145 to "Any process that activates or increases the frequency, rate, or extent of toll-like receptor 4 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034145
  * Added definition dbxref PMID:16551253 to GO:0034145
  * Added definition dbxref PMID:17328678 to GO:0034145
  * Added synonym "positive regulation of TLR4 signaling pathway" to GO:0034145
  * Changed synonym scope of GO:0034145 from "Related" to "Exact"
  * Added synonym "positive regulation of toll-like receptor 4 signalling pathway" to GO:0034145
  * Changed synonym scope of GO:0034145 from "Related" to "Exact"
  * Copied GO:0034145 to GO:0034123 with type OBO_REL:is_a
  * Copied GO:0034145 to GO:0034143 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034145
* Populated new object GO:0034146 (macro)
  * Changed name of GO:0034146 from "<new term>" to "toll-like receptor 5 signaling pathway"
  * Set definition of GO:0034146 to "Any series of molecular signals generated as a consequence of binding to toll-like receptor 5."
  * Added definition dbxref GOC:add to GO:0034146
  * Added definition dbxref PMID:16551253 to GO:0034146
  * Added definition dbxref PMID:17328678 to GO:0034146
  * Added synonym "TLR5 signaling pathway" to GO:0034146
  * Changed synonym scope of GO:0034146 from "Related" to "Exact"
  * Added synonym "toll-like receptor 5 signalling pathway" to GO:0034146
  * Changed synonym scope of GO:0034146 from "Related" to "Exact"
  * Copied GO:0034146 to GO:0002224 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034146
* Populated new object GO:0034147 (macro)
  * Changed name of GO:0034147 from "<new term>" to "regulation of toll-like receptor 5 signaling pathway"
  * Set definition of GO:0034147 to "Any process that modulates the frequency, rate, or extent of toll-like receptor 5 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034147
  * Added definition dbxref PMID:16551253 to GO:0034147
  * Added definition dbxref PMID:17328678 to GO:0034147
  * Added synonym "regulation of TLR5 signaling pathway" to GO:0034147
  * Changed synonym scope of GO:0034147 from "Related" to "Exact"
  * Added synonym "regulation of toll-like receptor 5 signalling pathway" to GO:0034147
  * Changed synonym scope of GO:0034147 from "Related" to "Exact"
  * Copied GO:0034147 to GO:0034146 with type part_of
  * Copied GO:0034147 to GO:0034121 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034147
* Populated new object GO:0034148 (macro)
  * Changed name of GO:0034148 from "<new term>" to "negative regulation of toll-like receptor 5 signaling pathway"
  * Set definition of GO:0034148 to "Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 5 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034148
  * Added definition dbxref PMID:16551253 to GO:0034148
  * Added definition dbxref PMID:17328678 to GO:0034148
  * Added synonym "negative regulation of TLR5 signaling pathway" to GO:0034148
  * Changed synonym scope of GO:0034148 from "Related" to "Exact"
  * Added synonym "negative regulation of toll-like receptor 5 signalling pathway" to GO:0034148
  * Changed synonym scope of GO:0034148 from "Related" to "Exact"
  * Copied GO:0034148 to GO:0034122 with type OBO_REL:is_a
  * Copied GO:0034148 to GO:0034147 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034148
* Populated new object GO:0034149 (macro)
  * Changed name of GO:0034149 from "<new term>" to "positive regulation of toll-like receptor 5 signaling pathway"
  * Set definition of GO:0034149 to "Any process that activates or increases the frequency, rate, or extent of toll-like receptor 5 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034149
  * Added definition dbxref PMID:16551253 to GO:0034149
  * Added definition dbxref PMID:17328678 to GO:0034149
  * Added synonym "positive regulation of TLR5 signaling pathway" to GO:0034149
  * Changed synonym scope of GO:0034149 from "Related" to "Exact"
  * Added synonym "positive regulation of toll-like receptor 5 signalling pathway" to GO:0034149
  * Changed synonym scope of GO:0034149 from "Related" to "Exact"
  * Copied GO:0034149 to GO:0034123 with type OBO_REL:is_a
  * Copied GO:0034149 to GO:0034147 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034149
* Populated new object GO:0034150 (macro)
  * Changed name of GO:0034150 from "<new term>" to "toll-like receptor 6 signaling pathway"
  * Set definition of GO:0034150 to "Any series of molecular signals generated as a consequence of binding to toll-like receptor 6."
  * Added definition dbxref GOC:add to GO:0034150
  * Added definition dbxref PMID:16551253 to GO:0034150
  * Added definition dbxref PMID:17328678 to GO:0034150
  * Added synonym "TLR6 signaling pathway" to GO:0034150
  * Changed synonym scope of GO:0034150 from "Related" to "Exact"
  * Added synonym "toll-like receptor 6 signalling pathway" to GO:0034150
  * Changed synonym scope of GO:0034150 from "Related" to "Exact"
  * Copied GO:0034150 to GO:0002224 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034150
* Populated new object GO:0034151 (macro)
  * Changed name of GO:0034151 from "<new term>" to "regulation of toll-like receptor 6 signaling pathway"
  * Set definition of GO:0034151 to "Any process that modulates the frequency, rate, or extent of toll-like receptor 6 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034151
  * Added definition dbxref PMID:16551253 to GO:0034151
  * Added definition dbxref PMID:17328678 to GO:0034151
  * Added synonym "regulation of TLR6 signaling pathway" to GO:0034151
  * Changed synonym scope of GO:0034151 from "Related" to "Exact"
  * Added synonym "regulation of toll-like receptor 6 signalling pathway" to GO:0034151
  * Changed synonym scope of GO:0034151 from "Related" to "Exact"
  * Copied GO:0034151 to GO:0034150 with type part_of
  * Copied GO:0034151 to GO:0034121 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034151
* Populated new object GO:0034152 (macro)
  * Changed name of GO:0034152 from "<new term>" to "negative regulation of toll-like receptor 6 signaling pathway"
  * Set definition of GO:0034152 to "Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 6 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034152
  * Added definition dbxref PMID:16551253 to GO:0034152
  * Added definition dbxref PMID:17328678 to GO:0034152
  * Added synonym "negative regulation of TLR6 signaling pathway" to GO:0034152
  * Changed synonym scope of GO:0034152 from "Related" to "Exact"
  * Added synonym "negative regulation of toll-like receptor 6 signalling pathway" to GO:0034152
  * Changed synonym scope of GO:0034152 from "Related" to "Exact"
  * Copied GO:0034152 to GO:0034151 with type OBO_REL:is_a
  * Copied GO:0034152 to GO:0034122 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034152
* Populated new object GO:0034153 (macro)
  * Changed name of GO:0034153 from "<new term>" to "positive regulation of toll-like receptor 6 signaling pathway"
  * Set definition of GO:0034153 to "Any process that activates or increases the frequency, rate, or extent of toll-like receptor 6 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034153
  * Added definition dbxref PMID:16551253 to GO:0034153
  * Added definition dbxref PMID:17328678 to GO:0034153
  * Added synonym "positive regulation of TLR6 signaling pathway" to GO:0034153
  * Changed synonym scope of GO:0034153 from "Related" to "Exact"
  * Added synonym "positive regulation of toll-like receptor 6 signalling pathway" to GO:0034153
  * Changed synonym scope of GO:0034153 from "Related" to "Exact"
  * Copied GO:0034153 to GO:0034151 with type OBO_REL:is_a
  * Copied GO:0034153 to GO:0034123 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034153
* Populated new object GO:0034154 (macro)
  * Changed name of GO:0034154 from "<new term>" to "toll-like receptor 7 signaling pathway"
  * Set definition of GO:0034154 to "Any series of molecular signals generated as a consequence of binding to toll-like receptor 7."
  * Added definition dbxref GOC:add to GO:0034154
  * Added definition dbxref PMID:16551253 to GO:0034154
  * Added definition dbxref PMID:17328678 to GO:0034154
  * Added synonym "TLR7 signaling pathway" to GO:0034154
  * Changed synonym scope of GO:0034154 from "Related" to "Exact"
  * Added synonym "toll-like receptor 7 signalling pathway" to GO:0034154
  * Changed synonym scope of GO:0034154 from "Related" to "Exact"
  * Copied GO:0034154 to GO:0002224 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034154
* Populated new object GO:0034155 (macro)
  * Changed name of GO:0034155 from "<new term>" to "regulation of toll-like receptor 7 signaling pathway"
  * Set definition of GO:0034155 to "Any process that modulates the frequency, rate, or extent of toll-like receptor 7 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034155
  * Added definition dbxref PMID:16551253 to GO:0034155
  * Added definition dbxref PMID:17328678 to GO:0034155
  * Added synonym "regulation of TLR7 signaling pathway" to GO:0034155
  * Changed synonym scope of GO:0034155 from "Related" to "Exact"
  * Added synonym "regulation of toll-like receptor 7 signalling pathway" to GO:0034155
  * Changed synonym scope of GO:0034155 from "Related" to "Exact"
  * Copied GO:0034155 to GO:0034121 with type OBO_REL:is_a
  * Copied GO:0034155 to GO:0034154 with type part_of
  * Assigned namespace "biological_process" to GO:0034155
* Populated new object GO:0034156 (macro)
  * Changed name of GO:0034156 from "<new term>" to "negative regulation of toll-like receptor 7 signaling pathway"
  * Set definition of GO:0034156 to "Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 7 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034156
  * Added definition dbxref PMID:16551253 to GO:0034156
  * Added definition dbxref PMID:17328678 to GO:0034156
  * Added synonym "negative regulation of TLR7 signaling pathway" to GO:0034156
  * Changed synonym scope of GO:0034156 from "Related" to "Exact"
  * Added synonym "negative regulation of toll-like receptor 7 signalling pathway" to GO:0034156
  * Changed synonym scope of GO:0034156 from "Related" to "Exact"
  * Copied GO:0034156 to GO:0034122 with type OBO_REL:is_a
  * Copied GO:0034156 to GO:0034155 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034156
* Populated new object GO:0034157 (macro)
  * Changed name of GO:0034157 from "<new term>" to "positive regulation of toll-like receptor 7 signaling pathway"
  * Set definition of GO:0034157 to "Any process that activates or increases the frequency, rate, or extent of toll-like receptor 7 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034157
  * Added definition dbxref PMID:16551253 to GO:0034157
  * Added definition dbxref PMID:17328678 to GO:0034157
  * Added synonym "positive regulation of TLR7 signaling pathway" to GO:0034157
  * Changed synonym scope of GO:0034157 from "Related" to "Exact"
  * Added synonym "positive regulation of toll-like receptor 7 signalling pathway" to GO:0034157
  * Changed synonym scope of GO:0034157 from "Related" to "Exact"
  * Copied GO:0034157 to GO:0034155 with type OBO_REL:is_a
  * Copied GO:0034157 to GO:0034123 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034157
* Populated new object GO:0034158 (macro)
  * Changed name of GO:0034158 from "<new term>" to "toll-like receptor 8 signaling pathway"
  * Set definition of GO:0034158 to "Any series of molecular signals generated as a consequence of binding to toll-like receptor 8."
  * Added definition dbxref GOC:add to GO:0034158
  * Added definition dbxref PMID:16551253 to GO:0034158
  * Added definition dbxref PMID:17328678 to GO:0034158
  * Added synonym "TLR8 signaling pathway" to GO:0034158
  * Changed synonym scope of GO:0034158 from "Related" to "Exact"
  * Added synonym "toll-like receptor 8 signalling pathway" to GO:0034158
  * Changed synonym scope of GO:0034158 from "Related" to "Exact"
  * Copied GO:0034158 to GO:0002224 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034158
* Populated new object GO:0034159 (macro)
  * Changed name of GO:0034159 from "<new term>" to "regulation of toll-like receptor 8 signaling pathway"
  * Set definition of GO:0034159 to "Any process that modulates the frequency, rate, or extent of toll-like receptor 8 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034159
  * Added definition dbxref PMID:16551253 to GO:0034159
  * Added definition dbxref PMID:17328678 to GO:0034159
  * Added synonym "regulation of TLR8 signaling pathway" to GO:0034159
  * Changed synonym scope of GO:0034159 from "Related" to "Exact"
  * Added synonym "regulation of toll-like receptor 8 signalling pathway" to GO:0034159
  * Changed synonym scope of GO:0034159 from "Related" to "Exact"
  * Copied GO:0034159 to GO:0034121 with type OBO_REL:is_a
  * Copied GO:0034159 to GO:0034158 with type part_of
  * Assigned namespace "biological_process" to GO:0034159
* Populated new object GO:0034160 (macro)
  * Changed name of GO:0034160 from "<new term>" to "negative regulation of toll-like receptor 8 signaling pathway"
  * Set definition of GO:0034160 to "Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 8 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034160
  * Added definition dbxref PMID:16551253 to GO:0034160
  * Added definition dbxref PMID:17328678 to GO:0034160
  * Added synonym "negative regulation of TLR8 signaling pathway" to GO:0034160
  * Changed synonym scope of GO:0034160 from "Related" to "Exact"
  * Added synonym "negative regulation of toll-like receptor 8 signalling pathway" to GO:0034160
  * Changed synonym scope of GO:0034160 from "Related" to "Exact"
  * Copied GO:0034160 to GO:0034159 with type OBO_REL:is_a
  * Copied GO:0034160 to GO:0034122 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034160
* Populated new object GO:0034161 (macro)
  * Changed name of GO:0034161 from "<new term>" to "positive regulation of toll-like receptor 8 signaling pathway"
  * Set definition of GO:0034161 to "Any process that activates or increases the frequency, rate, or extent of toll-like receptor 8 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034161
  * Added definition dbxref PMID:16551253 to GO:0034161
  * Added definition dbxref PMID:17328678 to GO:0034161
  * Added synonym "positive regulation of TLR8 signaling pathway" to GO:0034161
  * Changed synonym scope of GO:0034161 from "Related" to "Exact"
  * Added synonym "positive regulation of toll-like receptor 8 signalling pathway" to GO:0034161
  * Changed synonym scope of GO:0034161 from "Related" to "Exact"
  * Copied GO:0034161 to GO:0034123 with type OBO_REL:is_a
  * Copied GO:0034161 to GO:0034159 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034161
* Populated new object GO:0034162 (macro)
  * Changed name of GO:0034162 from "<new term>" to "toll-like receptor 9 signaling pathway"
  * Set definition of GO:0034162 to "Any series of molecular signals generated as a consequence of binding to toll-like receptor 9."
  * Added definition dbxref GOC:add to GO:0034162
  * Added definition dbxref PMID:16551253 to GO:0034162
  * Added definition dbxref PMID:17328678 to GO:0034162
  * Added synonym "TLR9 signaling pathway" to GO:0034162
  * Changed synonym scope of GO:0034162 from "Related" to "Exact"
  * Added synonym "toll-like receptor 9 signalling pathway" to GO:0034162
  * Changed synonym scope of GO:0034162 from "Related" to "Exact"
  * Copied GO:0034162 to GO:0002224 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034162
* Populated new object GO:0034163 (macro)
  * Changed name of GO:0034163 from "<new term>" to "regulation of toll-like receptor 9 signaling pathway"
  * Set definition of GO:0034163 to "Any process that modulates the frequency, rate, or extent of toll-like receptor 9 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034163
  * Added definition dbxref PMID:16551253 to GO:0034163
  * Added definition dbxref PMID:17328678 to GO:0034163
  * Added synonym "regulation of TLR9 signaling pathway" to GO:0034163
  * Changed synonym scope of GO:0034163 from "Related" to "Exact"
  * Added synonym "regulation of toll-like receptor 9 signalling pathway" to GO:0034163
  * Changed synonym scope of GO:0034163 from "Related" to "Exact"
  * Copied GO:0034163 to GO:0034121 with type OBO_REL:is_a
  * Copied GO:0034163 to GO:0034162 with type part_of
  * Assigned namespace "biological_process" to GO:0034163
* Populated new object GO:0034164 (macro)
  * Changed name of GO:0034164 from "<new term>" to "negative regulation of toll-like receptor 9 signaling pathway"
  * Set definition of GO:0034164 to "Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 9 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034164
  * Added definition dbxref PMID:16551253 to GO:0034164
  * Added definition dbxref PMID:17328678 to GO:0034164
  * Added synonym "negative regulation of TLR9 signaling pathway" to GO:0034164
  * Changed synonym scope of GO:0034164 from "Related" to "Exact"
  * Added synonym "negative regulation of toll-like receptor 9 signalling pathway" to GO:0034164
  * Changed synonym scope of GO:0034164 from "Related" to "Exact"
  * Copied GO:0034164 to GO:0034163 with type OBO_REL:is_a
  * Copied GO:0034164 to GO:0034122 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034164
* Populated new object GO:0034165 (macro)
  * Changed name of GO:0034165 from "<new term>" to "positive regulation of toll-like receptor 9 signaling pathway"
  * Set definition of GO:0034165 to "Any process that activates or increases the frequency, rate, or extent of toll-like receptor 9 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034165
  * Added definition dbxref PMID:16551253 to GO:0034165
  * Added definition dbxref PMID:17328678 to GO:0034165
  * Added synonym "positive regulation of TLR9 signaling pathway" to GO:0034165
  * Changed synonym scope of GO:0034165 from "Related" to "Exact"
  * Added synonym "positive regulation of toll-like receptor 9 signalling pathway" to GO:0034165
  * Changed synonym scope of GO:0034165 from "Related" to "Exact"
  * Copied GO:0034165 to GO:0034163 with type OBO_REL:is_a
  * Copied GO:0034165 to GO:0034123 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034165
* Populated new object GO:0034166 (macro)
  * Changed name of GO:0034166 from "<new term>" to "toll-like receptor 10 signaling pathway"
  * Set definition of GO:0034166 to "Any series of molecular signals generated as a consequence of binding to toll-like receptor 10."
  * Added definition dbxref GOC:add to GO:0034166
  * Added definition dbxref PMID:16551253 to GO:0034166
  * Added definition dbxref PMID:17328678 to GO:0034166
  * Added synonym "TLR10 signaling pathway" to GO:0034166
  * Changed synonym scope of GO:0034166 from "Related" to "Exact"
  * Added synonym "toll-like receptor 10 signalling pathway" to GO:0034166
  * Changed synonym scope of GO:0034166 from "Related" to "Exact"
  * Copied GO:0034166 to GO:0002224 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034166
* Populated new object GO:0034167 (macro)
  * Changed name of GO:0034167 from "<new term>" to "regulation of toll-like receptor 10 signaling pathway"
  * Set definition of GO:0034167 to "Any process that modulates the frequency, rate, or extent of toll-like receptor 10 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034167
  * Added definition dbxref PMID:16551253 to GO:0034167
  * Added definition dbxref PMID:17328678 to GO:0034167
  * Added synonym "regulation of TLR10 signaling pathway" to GO:0034167
  * Changed synonym scope of GO:0034167 from "Related" to "Exact"
  * Added synonym "regulation of toll-like receptor 10 signalling pathway" to GO:0034167
  * Changed synonym scope of GO:0034167 from "Related" to "Exact"
  * Copied GO:0034167 to GO:0034166 with type part_of
  * Copied GO:0034167 to GO:0034121 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034167
* Populated new object GO:0034168 (macro)
  * Changed name of GO:0034168 from "<new term>" to "negative regulation of toll-like receptor 10 signaling pathway"
  * Set definition of GO:0034168 to "Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 10 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034168
  * Added definition dbxref PMID:16551253 to GO:0034168
  * Added definition dbxref PMID:17328678 to GO:0034168
  * Added synonym "negative regulation of TLR10 signaling pathway" to GO:0034168
  * Changed synonym scope of GO:0034168 from "Related" to "Exact"
  * Added synonym "negative regulation of toll-like receptor 10 signalling pathway" to GO:0034168
  * Changed synonym scope of GO:0034168 from "Related" to "Exact"
  * Copied GO:0034168 to GO:0034167 with type OBO_REL:is_a
  * Copied GO:0034168 to GO:0034122 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034168
* Populated new object GO:0034169 (macro)
  * Changed name of GO:0034169 from "<new term>" to "positive regulation of toll-like receptor 10 signaling pathway"
  * Set definition of GO:0034169 to "Any process that activates or increases the frequency, rate, or extent of toll-like receptor 10 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034169
  * Added definition dbxref PMID:16551253 to GO:0034169
  * Added definition dbxref PMID:17328678 to GO:0034169
  * Added synonym "positive regulation of TLR10 signaling pathway" to GO:0034169
  * Changed synonym scope of GO:0034169 from "Related" to "Exact"
  * Added synonym "positive regulation of toll-like receptor 10 signalling pathway" to GO:0034169
  * Changed synonym scope of GO:0034169 from "Related" to "Exact"
  * Copied GO:0034169 to GO:0034123 with type OBO_REL:is_a
  * Copied GO:0034169 to GO:0034167 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034169
* Populated new object GO:0034170 (macro)
  * Changed name of GO:0034170 from "<new term>" to "toll-like receptor 11 signaling pathway"
  * Set definition of GO:0034170 to "Any series of molecular signals generated as a consequence of binding to toll-like receptor 11."
  * Added definition dbxref GOC:add to GO:0034170
  * Added definition dbxref PMID:16551253 to GO:0034170
  * Added definition dbxref PMID:17328678 to GO:0034170
  * Added synonym "TLR11 signaling pathway" to GO:0034170
  * Changed synonym scope of GO:0034170 from "Related" to "Exact"
  * Added synonym "toll-like receptor 11 signalling pathway" to GO:0034170
  * Changed synonym scope of GO:0034170 from "Related" to "Exact"
  * Copied GO:0034170 to GO:0002224 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034170
* Populated new object GO:0034171 (macro)
  * Changed name of GO:0034171 from "<new term>" to "regulation of toll-like receptor 11 signaling pathway"
  * Set definition of GO:0034171 to "Any process that modulates the frequency, rate, or extent of toll-like receptor 11 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034171
  * Added definition dbxref PMID:16551253 to GO:0034171
  * Added definition dbxref PMID:17328678 to GO:0034171
  * Added synonym "regulation of TLR11 signaling pathway" to GO:0034171
  * Changed synonym scope of GO:0034171 from "Related" to "Exact"
  * Added synonym "regulation of toll-like receptor 11 signalling pathway" to GO:0034171
  * Changed synonym scope of GO:0034171 from "Related" to "Exact"
  * Copied GO:0034171 to GO:0034121 with type OBO_REL:is_a
  * Copied GO:0034171 to GO:0034170 with type part_of
  * Assigned namespace "biological_process" to GO:0034171
* Populated new object GO:0034172 (macro)
  * Changed name of GO:0034172 from "<new term>" to "negative regulation of toll-like receptor 11 signaling pathway"
  * Set definition of GO:0034172 to "Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 11 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034172
  * Added definition dbxref PMID:16551253 to GO:0034172
  * Added definition dbxref PMID:17328678 to GO:0034172
  * Added synonym "negative regulation of TLR11 signaling pathway" to GO:0034172
  * Changed synonym scope of GO:0034172 from "Related" to "Exact"
  * Added synonym "negative regulation of toll-like receptor 11 signalling pathway" to GO:0034172
  * Changed synonym scope of GO:0034172 from "Related" to "Exact"
  * Copied GO:0034172 to GO:0034171 with type OBO_REL:is_a
  * Copied GO:0034172 to GO:0034122 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034172
* Populated new object GO:0034173 (macro)
  * Changed name of GO:0034173 from "<new term>" to "positive regulation of toll-like receptor 11 signaling pathway"
  * Set definition of GO:0034173 to "Any process that activates or increases the frequency, rate, or extent of toll-like receptor 11 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034173
  * Added definition dbxref PMID:16551253 to GO:0034173
  * Added definition dbxref PMID:17328678 to GO:0034173
  * Added synonym "positive regulation of TLR11 signaling pathway" to GO:0034173
  * Changed synonym scope of GO:0034173 from "Related" to "Exact"
  * Added synonym "positive regulation of toll-like receptor 11 signalling pathway" to GO:0034173
  * Changed synonym scope of GO:0034173 from "Related" to "Exact"
  * Copied GO:0034173 to GO:0034171 with type OBO_REL:is_a
  * Copied GO:0034173 to GO:0034123 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034173
* Populated new object GO:0034174 (macro)
  * Changed name of GO:0034174 from "<new term>" to "toll-like receptor 12 signaling pathway"
  * Set definition of GO:0034174 to "Any series of molecular signals generated as a consequence of binding to toll-like receptor 12."
  * Added definition dbxref GOC:add to GO:0034174
  * Added definition dbxref PMID:16551253 to GO:0034174
  * Added definition dbxref PMID:17328678 to GO:0034174
  * Added synonym "TLR12 signaling pathway" to GO:0034174
  * Changed synonym scope of GO:0034174 from "Related" to "Exact"
  * Added synonym "toll-like receptor 12 signalling pathway" to GO:0034174
  * Changed synonym scope of GO:0034174 from "Related" to "Exact"
  * Copied GO:0034174 to GO:0002224 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034174
* Populated new object GO:0034175 (macro)
  * Changed name of GO:0034175 from "<new term>" to "regulation of toll-like receptor 12 signaling pathway"
  * Set definition of GO:0034175 to "Any process that modulates the frequency, rate, or extent of toll-like receptor 12 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034175
  * Added definition dbxref PMID:16551253 to GO:0034175
  * Added definition dbxref PMID:17328678 to GO:0034175
  * Added synonym "regulation of TLR12 signaling pathway" to GO:0034175
  * Changed synonym scope of GO:0034175 from "Related" to "Exact"
  * Added synonym "regulation of toll-like receptor 12 signalling pathway" to GO:0034175
  * Changed synonym scope of GO:0034175 from "Related" to "Exact"
  * Copied GO:0034175 to GO:0034121 with type OBO_REL:is_a
  * Copied GO:0034175 to GO:0034174 with type part_of
  * Assigned namespace "biological_process" to GO:0034175
* Populated new object GO:0034176 (macro)
  * Changed name of GO:0034176 from "<new term>" to "negative regulation of toll-like receptor 12 signaling pathway"
  * Set definition of GO:0034176 to "Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 12 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034176
  * Added definition dbxref PMID:16551253 to GO:0034176
  * Added definition dbxref PMID:17328678 to GO:0034176
  * Added synonym "negative regulation of TLR12 signaling pathway" to GO:0034176
  * Changed synonym scope of GO:0034176 from "Related" to "Exact"
  * Added synonym "negative regulation of toll-like receptor 12 signalling pathway" to GO:0034176
  * Changed synonym scope of GO:0034176 from "Related" to "Exact"
  * Copied GO:0034176 to GO:0034175 with type OBO_REL:is_a
  * Copied GO:0034176 to GO:0034122 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034176
* Populated new object GO:0034177 (macro)
  * Changed name of GO:0034177 from "<new term>" to "positive regulation of toll-like receptor 12 signaling pathway"
  * Set definition of GO:0034177 to "Any process that activates or increases the frequency, rate, or extent of toll-like receptor 12 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034177
  * Added definition dbxref PMID:16551253 to GO:0034177
  * Added definition dbxref PMID:17328678 to GO:0034177
  * Added synonym "positive regulation of TLR12 signaling pathway" to GO:0034177
  * Changed synonym scope of GO:0034177 from "Related" to "Exact"
  * Added synonym "positive regulation of toll-like receptor 12 signalling pathway" to GO:0034177
  * Changed synonym scope of GO:0034177 from "Related" to "Exact"
  * Copied GO:0034177 to GO:0034175 with type OBO_REL:is_a
  * Copied GO:0034177 to GO:0034123 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034177
* Populated new object GO:0034178 (macro)
  * Changed name of GO:0034178 from "<new term>" to "toll-like receptor 13 signaling pathway"
  * Set definition of GO:0034178 to "Any series of molecular signals generated as a consequence of binding to toll-like receptor 13."
  * Added definition dbxref GOC:add to GO:0034178
  * Added definition dbxref PMID:16551253 to GO:0034178
  * Added definition dbxref PMID:17328678 to GO:0034178
  * Added synonym "TLR13 signaling pathway" to GO:0034178
  * Changed synonym scope of GO:0034178 from "Related" to "Exact"
  * Added synonym "toll-like receptor 13 signalling pathway" to GO:0034178
  * Changed synonym scope of GO:0034178 from "Related" to "Exact"
  * Copied GO:0034178 to GO:0002224 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034178
* Populated new object GO:0034179 (macro)
  * Changed name of GO:0034179 from "<new term>" to "regulation of toll-like receptor 13 signaling pathway"
  * Set definition of GO:0034179 to "Any process that modulates the frequency, rate, or extent of toll-like receptor 13 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034179
  * Added definition dbxref PMID:16551253 to GO:0034179
  * Added definition dbxref PMID:17328678 to GO:0034179
  * Added synonym "regulation of TLR13 signaling pathway" to GO:0034179
  * Changed synonym scope of GO:0034179 from "Related" to "Exact"
  * Added synonym "regulation of toll-like receptor 13 signalling pathway" to GO:0034179
  * Changed synonym scope of GO:0034179 from "Related" to "Exact"
  * Copied GO:0034179 to GO:0034121 with type OBO_REL:is_a
  * Copied GO:0034179 to GO:0034178 with type part_of
  * Assigned namespace "biological_process" to GO:0034179
* Populated new object GO:0034180 (macro)
  * Changed name of GO:0034180 from "<new term>" to "negative regulation of toll-like receptor 13 signaling pathway"
  * Set definition of GO:0034180 to "Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 13 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034180
  * Added definition dbxref PMID:16551253 to GO:0034180
  * Added definition dbxref PMID:17328678 to GO:0034180
  * Added synonym "negative regulation of TLR13 signaling pathway" to GO:0034180
  * Changed synonym scope of GO:0034180 from "Related" to "Exact"
  * Added synonym "negative regulation of toll-like receptor 13 signalling pathway" to GO:0034180
  * Changed synonym scope of GO:0034180 from "Related" to "Exact"
  * Copied GO:0034180 to GO:0034179 with type OBO_REL:is_a
  * Copied GO:0034180 to GO:0034122 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034180
* Populated new object GO:0034181 (macro)
  * Changed name of GO:0034181 from "<new term>" to "positive regulation of toll-like receptor 13 signaling pathway"
  * Set definition of GO:0034181 to "Any process that activates or increases the frequency, rate, or extent of toll-like receptor 13 signaling pathway."
  * Added definition dbxref GOC:add to GO:0034181
  * Added definition dbxref PMID:16551253 to GO:0034181
  * Added definition dbxref PMID:17328678 to GO:0034181
  * Added synonym "positive regulation of TLR13 signaling pathway" to GO:0034181
  * Changed synonym scope of GO:0034181 from "Related" to "Exact"
  * Added synonym "positive regulation of toll-like receptor 13 signalling pathway" to GO:0034181
  * Changed synonym scope of GO:0034181 from "Related" to "Exact"
  * Copied GO:0034181 to GO:0034123 with type OBO_REL:is_a
  * Copied GO:0034181 to GO:0034179 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034181
* Changed definition of GO:0000775 from "The central region of a chromosome that includes the centromere and associated proteins." to "The central region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes, this region corresponds to a single
area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome."
* Added definition dbxref GOC:kva to GO:0000775
* Changed definition of GO:0000779 from "The central region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore." to "The central region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single
area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome."
* Added definition dbxref GOC:kva to GO:0000779
* Changed definition of GO:0000780 from "The central region of a condensed chromosome in the nucleus that includes the centromere and associated proteins, including the kinetochore." to "The central region of a condensed chromosome in the nucleus that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single
area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome."
* Added definition dbxref GOC:kva to GO:0000780
* Changed name of GO:0001403 from "invasive growth (sensu Saccharomyces)" to "invasive growth in response to glucose limitation"
* Changed definition of GO:0001403 from "A growth pattern exhibited by haploid cells under certain growth conditions, in which cells retain the typical axial budding pattern of haploids, but become elongated and fail to separate after division; during growth on a solid substrate, this results in penetration of cells into the agar medium. As in, but not restricted to, the taxon Saccharomyces (Saccharomyces, ncbi_taxonomy_id:4930)." to "A growth pattern exhibited by budding haploid cells under certain growth conditions, in which cells retain the typical axial budding pattern of haploids, but become elongated and fail to separate after division; during growth on a solid substrate, this results in penetration of cells into the agar medium."
* Added synonym "invasive growth (sensu Saccharomyces)" to GO:0001403
* Changed synonym scope of GO:0001403 from "Related" to "Exact"
* Deleted GO:0001403 --OBO_REL:is_a--> GO:0016049
* Added comment "Note that this term should not be confused with 'response to anoxia ; GO:0034059'."
* Deleted synonym "deoxynucleate polymerase activity" from GO:0003887
* Deleted synonym "deoxyribonucleate nucleotidyltransferase activity" from GO:0003887
* Deleted synonym "deoxyribonucleic acid polymerase" from GO:0003887
* Deleted synonym "deoxyribonucleic polymerase" from GO:0003887
* Deleted synonym "DNA nucleotidyltransferase activity" from GO:0003887
* Deleted synonym "DNA polymerase" from GO:0003887
* Deleted GO:0003887 --OBO_REL:is_a--> GO:0016779
* Copied GO:0003887 to GO:0034061 with type OBO_REL:is_a
* Deleted synonym "ribonucleate nucleotidyltransferase" from GO:0003899
* Deleted synonym "ribonucleate polymerase" from GO:0003899
* Deleted synonym "ribonucleic acid nucleotidyltransferase" from GO:0003899
* Deleted synonym "ribonucleic acid polymerase" from GO:0003899
* Deleted synonym "ribonucleic acid transcriptase" from GO:0003899
* Deleted synonym "ribonucleic polymerase" from GO:0003899
* Deleted synonym "ribonucleic transcriptase" from GO:0003899
* Deleted synonym "RNA nucleotidyltransferase" from GO:0003899
* Deleted synonym "RNA polymerase" from GO:0003899
* Deleted synonym "RNA transcriptase" from GO:0003899
* Deleted GO:0003899 --OBO_REL:is_a--> GO:0016779
* Copied GO:0003899 to GO:0034062 with type OBO_REL:is_a
* Deleted GO:0003964 --OBO_REL:is_a--> GO:0016779
* Copied GO:0003964 to GO:0034061 with type OBO_REL:is_a
* Changed synonym scope of GO:0003968 from "Exact" to "Related"
* Changed synonym scope of GO:0003968 from "Exact" to "Related"
* Deleted synonym "RNA transcriptase" from GO:0003968
* Deleted GO:0003968 --OBO_REL:is_a--> GO:0016779
* Copied GO:0003968 to GO:0034062 with type OBO_REL:is_a
* Added synonym "long-chain fatty acid-CoA ligase activity" to GO:0004467
* Changed synonym scope of GO:0004467 from "Related" to "Exact"
* Deleted GO:0005496 --OBO_REL:is_a--> GO:0005488
* Copied GO:0005496 to GO:0008289 with type OBO_REL:is_a
* Changed name of GO:0005619 from "spore wall (sensu Fungi)" to "fungal-type spore wall"
* Changed definition of GO:0005619 from "The specialized cell wall of the ascospore (spore). As in, but not restricted to, the fungi (Fungi, ncbi_taxonomy_id:4751)." to "The specialized cell wall of the ascospore (spore), which is the product of meiotic division."
* Added definition dbxref GOC:vw to GO:0005619
* Added synonym "spore wall (sensu Fungi)" to GO:0005619
* Changed synonym scope of GO:0005619 from "Related" to "Exact"
* Added synonym "long-chain fatty acid-[acyl-carrier-protein] ligase activity" to GO:0008922
* Changed synonym scope of GO:0008922 from "Related" to "Exact"
* Changed name of GO:0009277 from "chitin- and beta-glucan-containing cell wall" to "fungal-type cell wall"
* Changed definition of GO:0009277 from "A rigid yet dynamic structure surrounding the plasma membrane that affords protection from stresses and contributes to cell morphogenesis, consisting of an inner layer formed of a network of beta-glucans crosslinked to chitin and an outer layer of mannoproteins and other glycoproteins. The inner layer contains primarily beta1,3-glucans; beta1,6-glucans are present in lower amounts, and in some species alpha-glucans and other carbohydrate polymers are also present. Enzymes involved in cell wall biosynthesis are also found in the cell wall. Note that some forms of fungi develop a capsule outside of the cell wall under certain circumstances; this is considered a separate structure. As in, but not restricted to, the fungi (Fungi, ncbi_taxonomy_id:4751)." to "A rigid yet dynamic structure surrounding the plasma membrane that affords protection from stresses and contributes to cell morphogenesis, consisting of extensively cross-linked glycoproteins and carbohydrates. The glycoproteins may be modified with N- or O-linked carbohydrates, or glycosylphosphatidylinositol (GPI) anchors; the polysaccharides are primarily branched glucans, including beta-linked and alpha-linked glucans, and may also include chitin and other carbohydrate polymers, but not cellulose or pectin. Enzymes involved in cell wall biosynthesis are also found in the cell wall. Note that some forms of fungi develop a capsule outside of the cell wall under certain circumstances; this is considered a separate structure."
* Added definition dbxref GOC:mcc to GO:0009277
* Added definition dbxref PMID:16927300 to GO:0009277
* Changed synonym scope of GO:0009277 from "Exact" to "Related"
* Changed synonym scope of GO:0009277 from "Broad" to "Related"
* Added synonym "chitin- and beta-glucan-containing cell wall" to GO:0009277
* Changed synonym scope of GO:0009277 from "Related" to "Narrow"
* Copied GO:0010494 to GO:0030529 with type OBO_REL:is_a
* Changed definition of GO:0030445 from "The cell wall surrounding a fungal cell in the single-cell, or yeast, form." to "The wall surrounding a cell of a dimorphic fungus growing in the single-cell budding yeast form, in contrast to the filamentous or hyphal form."
* Added definition dbxref GOC:mcc to GO:0030445
* Changed name of GO:0030476 from "spore wall assembly (sensu Fungi)" to "fungal-type spore wall assembly"
* Changed definition of GO:0030476 from "Process by which the spore nucleus becomes surrounded by a specialized spore wall. Occurs by deposition of spore wall components in the lumenal space between the outer and inner leaflets of the prospore membrane. As in, but not restricted to, the fungi (Fungi, ncbi_taxonomy_id:4751)." to "Process by which the spore nucleus becomes surrounded by a specialized spore wall. Occurs by deposition of spore wall components in the lumenal space between the outer and inner leaflets of the prospore membrane."
* Added synonym "spore wall assembly (sensu Fungi)" to GO:0030476
* Changed synonym scope of GO:0030476 from "Related" to "Exact"
* Added synonym "recovery from replication fork arrest" to GO:0031297
* Changed synonym scope of GO:0031297 from "Related" to "Exact"
* Deleted GO:0031297 --part_of--> GO:0031573
* Copied GO:0031297 to GO:0006974 with type OBO_REL:is_a
* Changed name of GO:0031931 from "TORC 1 complex" to "TORC1 complex"
* Added synonym "TORC 1 complex" to GO:0031931
* Changed synonym scope of GO:0031931 from "Related" to "Exact"
* Changed name of GO:0031932 from "TORC 2 complex" to "TORC2 complex"
* Added synonym "TORC 2 complex" to GO:0031932
* Changed synonym scope of GO:0031932 from "Related" to "Exact"
* Added synonym "short-chain fatty acid-CoA ligase activity" to GO:0031955
* Changed synonym scope of GO:0031955 from "Related" to "Exact"
* Added synonym "medium-chain fatty acid-CoA ligase activity" to GO:0031956
* Changed synonym scope of GO:0031956 from "Related" to "Exact"
* Added synonym "very-long-chain fatty acid-CoA ligase activity" to GO:0031957
* Changed synonym scope of GO:0031957 from "Related" to "Exact"
* Changed definition of GO:0033596 from "A heterodimeric protein complex consisting of tumerin and hamartin; its formation may regulate hamartin homomultimer formation." to "A heterodimeric protein complex consisting of tumerin and hamartin; its formation may regulate hamartin homomultimer formation. The complex acts as a GTPase activating protein (GAP) for the small GTPase
(Rheb), and inhibits the TOR signaling pathway."
* Added definition dbxref PMID:17121544 to GO:0033596
* Added synonym "tuberous sclerosis complex" to GO:0033596
* Changed synonym scope of GO:0033596 from "Related" to "Exact"
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"
* Copied GO:0042770 to GO:0007242 with type OBO_REL:is_a
* Deleted GO:0045990 --OBO_REL:is_a--> GO:0007584
* Copied GO:0045990 to GO:0031670 with type OBO_REL:is_a


From gocvs at genome.Stanford.EDU  Mon Jan  7 21:30:44 2008
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Mon, 7 Jan 2008 21:30:44 -0800 (PST)
Subject: [go-diff] GO update 01/07/2008
Message-ID: <200801080530.VAA02399@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.632 by 5.636

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034065
* Created object of type obo:TERM with id GO:0034066
* Created object of type obo:TERM with id GO:0034067
* Created object of type obo:TERM with id GO:0034068
* Created object of type obo:TERM with id GO:0034069
* Created object of type obo:TERM with id GO:0034070
* Created object of type obo:TERM with id GO:0034071
* Created object of type obo:TERM with id GO:0034072
* Created object of type obo:TERM with id GO:0034073
* Created object of type obo:TERM with id GO:0034074
* Created object of type obo:TERM with id GO:0034075
* Created object of type obo:TERM with id GO:0034076
* Created object of type obo:TERM with id GO:0060188
* Created object of type obo:TERM with id GO:0060189
* Created object of type obo:TERM with id GO:0060190
* Created object of type obo:TERM with id GO:0060191
* Created object of type obo:TERM with id GO:0060192
* Created object of type obo:TERM with id GO:0060193
* Created object of type obo:TERM with id GO:0060194
* Created object of type obo:TERM with id GO:0060195
* Created object of type obo:TERM with id GO:0060196
* Populated new object GO:0034065 (macro)
  * Changed name of GO:0034065 from "<new term>" to "replication fork processing at rDNA locus"
  * Set definition of GO:0034065 to "The process by which a DNA replication fork that has stalled at the rDNA replication fork barrier (RFB) is repaired and replication is restarted."
  * Added definition dbxref GOC:vw to GO:0034065
  * Added synonym "recovery from replication fork arrest at rDNA locus" to GO:0034065
  * Changed synonym scope of GO:0034065 from "Related" to "Exact"
  * Added synonym "recovery from replication fork stalling at rDNA locus" to GO:0034065
  * Changed synonym scope of GO:0034065 from "Related" to "Exact"
  * Added synonym "replication fork processing at ribosomal DNA locus" to GO:0034065
  * Changed synonym scope of GO:0034065 from "Related" to "Exact"
  * Copied GO:0034065 to GO:0031297 with type OBO_REL:is_a
  * Copied GO:0034065 to GO:0043007 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034065
* Populated new object GO:0034066 (macro)
  * Changed name of GO:0034066 from "<new term>" to "Ric1p-Rgp1p complex"
  * Set definition of GO:0034066 to "A protein complex that acts as a nucleotide exchange factor for the GTPase Ypt6p, and is required for fusion of endosome-derived vesicles with the Golgi."
  * Added definition dbxref GOC:jh to GO:0034066
  * Added definition dbxref GOC:mah to GO:0034066
  * Added definition dbxref PMID:10990452 to GO:0034066
  * Copied GO:0034066 to GO:0043234 with type OBO_REL:is_a
  * Copied GO:0034066 to GO:0044431 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034066
* Populated new object GO:0034067 (macro)
  * Changed name of GO:0034067 from "<new term>" to "protein localization in Golgi apparatus"
  * Set definition of GO:0034067 to "A process by which a protein is transported to, or maintained in, a location within the Golgi apparatus."
  * Added definition dbxref GOC:mah to GO:0034067
  * Copied GO:0034067 to GO:0033365 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034067
* Populated new object GO:0034068 (macro)
  * Changed name of GO:0034068 from "<new term>" to "aminoglycoside nucleotidyltransferase activity"
  * Set definition of GO:0034068 to "Catalysis of the reaction nucleoside
triphosphate + aminoglycoside = diphosphate + nucleotidylaminoglycoside."
  * Added definition dbxref GOC:cb to GO:0034068
  * Added synonym "aminoglycoside adenylyltransferase activity" to GO:0034068
  * Changed synonym scope of GO:0034068 from "Related" to "Narrow"
  * Added synonym "streptomycin adenylate synthetase activity" to GO:0034068
  * Added general dbxref EC:2.7.7.47 to synonym streptomycin adenylate synthetase activity of GO:0034068
  * Changed synonym scope of GO:0034068 from "Related" to "Narrow"
  * Added synonym "streptomycin adenyltransferase activity" to GO:0034068
  * Added general dbxref EC:2.7.7.47 to synonym streptomycin adenyltransferase activity of GO:0034068
  * Changed synonym scope of GO:0034068 from "Related" to "Narrow"
  * Added synonym "streptomycin adenylylase activity" to GO:0034068
  * Added general dbxref EC:2.7.7.47 to synonym streptomycin adenylylase activity of GO:0034068
  * Changed synonym scope of GO:0034068 from "Related" to "Narrow"
  * Added synonym "streptomycin adenylyltransferase activity" to GO:0034068
  * Added general dbxref EC:2.7.7.47 to synonym streptomycin adenylyltransferase activity of GO:0034068
  * Changed synonym scope of GO:0034068 from "Related" to "Narrow"
  * Added synonym "streptomycin-spectinomycin adenylyltransferase activity" to GO:0034068
  * Added general dbxref EC:2.7.7.47 to synonym streptomycin-spectinomycin adenylyltransferase activity of GO:0034068
  * Changed synonym scope of GO:0034068 from "Related" to "Narrow"
  * Copied GO:0034068 to GO:0016779 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034068
* Populated new object GO:0034069 (macro)
  * Changed name of GO:0034069 from "<new term>" to "aminoglycoside N-acetyltransferase activity"
  * Set definition of GO:0034069 to "Catalysis of the reaction: acetyl-CoA + aminoglycoside = CoA + N-acetylaminoglycoside."
  * Added definition dbxref GOC:cb to GO:0034069
  * Added synonym "kanamycin acetyltransferase activity" to GO:0034069
  * Changed synonym scope of GO:0034069 from "Related" to "Narrow"
  * Copied GO:0034069 to GO:0008080 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034069
* Populated new object GO:0034070 (macro)
  * Changed name of GO:0034070 from "<new term>" to "aminoglycoside 1-N-acetyltransferase activity"
  * Set definition of GO:0034070 to "Catalysis of the reaction: acetyl-CoA + aminoglycoside = CoA +
1-N-acetylaminoglycoside. This is acetylation of the 1-amino group of the
central deoxystreptamine ring."
  * Added definition dbxref GOC:cb to GO:0034070
  * Copied GO:0034070 to GO:0034069 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034070
* Populated new object GO:0034071 (macro)
  * Changed name of GO:0034071 from "<new term>" to "aminoglycoside phosphotransferase activity"
  * Set definition of GO:0034071 to "Catalysis of the reaction: ATP + aminoglycoside = ADP + phosphoaminoglycoside."
  * Added definition dbxref GOC:cb to GO:0034071
  * Added definition dbxref GOC:mah to GO:0034071
  * Added general dbxref EC:2.7.1.119 to GO:0034071
  * Added general dbxref MetaCyc:HYGROMYCIN-B-KINASE-RXN to GO:0034071
  * Added GO:0034071 to category gosubset_prok
  * Added synonym "aminoglycoside kinase activity" to GO:0034071
  * Changed synonym scope of GO:0034071 from "Related" to "Exact"
  * Copied GO:0034071 to GO:0016773 with type OBO_REL:is_a
  * Copied GO:0034071 to GO:0016301 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034071
* Populated new object GO:0034072 (macro)
  * Changed name of GO:0034072 from "<new term>" to "squalene cyclase activity"
  * Set definition of GO:0034072 to "Catalysis of the reaction: squalene = triterpene."
  * Added definition dbxref GOC:cb to GO:0034072
  * Added definition dbxref PMID:18033581 to GO:0034072
  * Copied GO:0034072 to GO:0009975 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034072
* Populated new object GO:0034073 (macro)
  * Changed name of GO:0034073 from "<new term>" to "tetrahymanol cyclase activity"
  * Set definition of GO:0034073 to "Catalysis of the reaction: squalene = tetrahymanol."
  * Added definition dbxref ChEBI:9493 to GO:0034073
  * Added definition dbxref GOC:cb to GO:0034073
  * Added definition dbxref PMID:18033581 to GO:0034073
  * Copied GO:0034073 to GO:0034072 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034073
* Populated new object GO:0034074 (macro)
  * Changed name of GO:0034074 from "<new term>" to "marneral synthase activity"
  * Set definition of GO:0034074 to "Catalysis of the reaction: oxidosqualene = marneral."
  * Added definition dbxref GOC:cb to GO:0034074
  * Added definition dbxref http://www.wiley-vch.de/contents/jc_2002/2006/z503420_s.pdf to GO:0034074
  * Added definition dbxref PMID:16425307 to GO:0034074
  * Added definition dbxref PMID:18033581 to GO:0034074
  * Copied GO:0034074 to GO:0031559 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034074
* Populated new object GO:0034075 (macro)
  * Changed name of GO:0034075 from "<new term>" to "arabidiol synthase activity"
  * Set definition of GO:0034075 to "Catalysis of the reaction: oxidosqualene = arabidiol ((3S,13R,14R)-malabarica-17E,21-dien-3beta,14-diol)."
  * Added definition dbxref GOC:cb to GO:0034075
  * Added definition dbxref PMID:18033581 to GO:0034075
  * Copied GO:0034075 to GO:0031559 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034075
* Populated new object GO:0034076 (macro)
  * Changed name of GO:0034076 from "<new term>" to "cucurbitadienol synthase activity"
  * Set definition of GO:0034076 to "Catalysis of the reaction: oxidosqualene = cucurbitadienol."
  * Added definition dbxref GOC:cb to GO:0034076
  * Added definition dbxref http:/beta.uniprot.org/uniprot/Q6BE24 to GO:0034076
  * Added definition dbxref PMID:18033581 to GO:0034076
  * Copied GO:0034076 to GO:0031559 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034076
* Populated new object GO:0060188 (macro)
  * Changed name of GO:0060188 from "<new term>" to "regulation of protein desumoylation"
  * Set definition of GO:0060188 to "Any process that modulates the frequency, rate or extent of protein desumoylation. Protein desumoylation is the process by which a SUMO protein (small ubiquitin-related modifier) is cleaved from its target protein."
  * Added definition dbxref GOC:dph to GO:0060188
  * Added definition dbxref GOC:tb to GO:0060188
  * Copied GO:0060188 to GO:0016926 with type part_of
  * Copied GO:0060188 to GO:0031399 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060188
* Populated new object GO:0060189 (macro)
  * Changed name of GO:0060189 from "<new term>" to "positive regulation of protein desumoylation"
  * Set definition of GO:0060189 to "Any process that increases the frequency, rate or extent of protein desumoylation. Protein desumoylation is the process by which a SUMO protein (small ubiquitin-related modifier) is cleaved from its target protein."
  * Added definition dbxref GOC:dph to GO:0060189
  * Added definition dbxref GOC:tb to GO:0060189
  * Copied GO:0060189 to GO:0060188 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060189
* Populated new object GO:0060190 (macro)
  * Changed name of GO:0060190 from "<new term>" to "negative regulation of protein desumoylation"
  * Set definition of GO:0060190 to "Any process that decreases the frequency, rate or extent of protein desumoylation. Protein desumoylation is the process by which a SUMO protein (small ubiquitin-related modifier) is cleaved from its target protein."
  * Added definition dbxref GOC:dph to GO:0060190
  * Added definition dbxref GOC:tb to GO:0060190
  * Copied GO:0060190 to GO:0060188 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060190
* Populated new object GO:0060191 (macro)
  * Changed name of GO:0060191 from "<new term>" to "regulation of lipase activity"
  * Set definition of GO:0060191 to "Any process that modulates the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid."
  * Added definition dbxref GOC:dph to GO:0060191
  * Added definition dbxref GOC:tb to GO:0060191
  * Copied GO:0060191 to GO:0051336 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060191
* Populated new object GO:0060192 (macro)
  * Changed name of GO:0060192 from "<new term>" to "negative regulation of lipase activity"
  * Set definition of GO:0060192 to "Any process that decreases the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid."
  * Added definition dbxref GOC:dph to GO:0060192
  * Added definition dbxref GOC:tb to GO:0060192
  * Copied GO:0060192 to GO:0060191 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060192
* Populated new object GO:0060193 (macro)
  * Changed name of GO:0060193 from "<new term>" to "positive regulation of lipase activity"
  * Set definition of GO:0060193 to "Any process that increases the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid."
  * Added definition dbxref GOC:dph to GO:0060193
  * Added definition dbxref GOC:tb to GO:0060193
  * Copied GO:0060193 to GO:0060191 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060193
* Populated new object GO:0060194 (macro)
  * Changed name of GO:0060194 from "<new term>" to "regulation of antisense RNA transcription"
  * Set definition of GO:0060194 to "Any process that modulates the frequency, rate or extent of the synthesis of antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis, on a template of DNA."
  * Added definition dbxref GOC:dph to GO:0060194
  * Added definition dbxref GOC:jp to GO:0060194
  * Added definition dbxref GOC:tb to GO:0060194
  * Added definition dbxref PMID:18075583 to GO:0060194
  * Copied GO:0060194 to GO:0009300 with type part_of
  * Copied GO:0060194 to GO:0006355 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060194
* Populated new object GO:0060195 (macro)
  * Changed name of GO:0060195 from "<new term>" to "negative regulation of antisense RNA transcription"
  * Set definition of GO:0060195 to "Any process that decreases the frequency, rate or extent of the synthesis of antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis, on a template of DNA."
  * Added definition dbxref GOC:dph to GO:0060195
  * Added definition dbxref GOC:tb to GO:0060195
  * Added definition dbxref PMID:18075583 to GO:0060195
  * Copied GO:0060195 to GO:0060194 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060195
* Populated new object GO:0060196 (macro)
  * Changed name of GO:0060196 from "<new term>" to "positive regulation of antisense RNA transcription"
  * Set definition of GO:0060196 to "Any process that increases the frequency, rate or extent of the synthesis of antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis, on a template of DNA."
  * Added definition dbxref GOC:dph to GO:0060196
  * Added definition dbxref GOC:tb to GO:0060196
  * Added definition dbxref PMID:18075583 to GO:0060196
  * Copied GO:0060196 to GO:0060194 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060196
* Added synonym "oxidosqualene:lanosterol cyclase activity" to GO:0000250
* Added general dbxref PMID:18033581 to synonym oxidosqualene:lanosterol cyclase activity of GO:0000250
* Changed synonym scope of GO:0000250 from "Related" to "Exact"
* Copied GO:0001555 to GO:0048588 with type OBO_REL:is_a
* Changed definition of GO:0006890 from "The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by COP I vesicles." to "The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG."
* Added definition dbxref PMID:16510524 to GO:0006890
* Deleted GO:0007285 --OBO_REL:is_a--> GO:0016049
* Copied GO:0007285 to GO:0048588 with type OBO_REL:is_a
* Deleted GO:0008361 --OBO_REL:is_a--> GO:0022604
* Changed name of GO:0008871 from "gentamicin 2''-nucleotidyltransferase activity" to "aminoglycoside 2''-nucleotidyltransferase activity"
* Changed definition of GO:0008871 from "Catalysis of the reaction: nucleoside triphosphate + gentamicin = diphosphate + 2''-nucleotidylgentamicin." to "Catalysis of the reaction: nucleoside triphosphate + aminoglycoside = diphosphate + 2''-nucleotidylaminoglycoside."
* Added definition dbxref GOC:cb to GO:0008871
* Deleted synonym "aminoglycoside adenylyltransferase activity" from GO:0008871
* Changed synonym scope of GO:0008871 from "Exact" to "Narrow"
* Changed synonym scope of GO:0008871 from "Exact" to "Narrow"
* Changed synonym scope of GO:0008871 from "Exact" to "Narrow"
* Added synonym "gentamicin 2''-nucleotidyltransferase activity" to GO:0008871
* Added general dbxref EC:2.7.7.46 to synonym gentamicin 2''-nucleotidyltransferase activity of GO:0008871
* Changed synonym scope of GO:0008871 from "Related" to "Narrow"
* Deleted GO:0008871 --OBO_REL:is_a--> GO:0016779
* Copied GO:0008871 to GO:0034068 with type OBO_REL:is_a
* Changed name of GO:0008904 from "hygromycin B kinase activity" to "aminoglycoside 7''-O-phosphotransferase activity"
* Changed definition of GO:0008904 from "Catalysis of the reaction: ATP + hygromycin B = ADP + 7''-O-phosphohygromycin B." to "Catalysis of the reaction: ATP + aminoglycoside = ADP + 7''-O-phosphoaminoglycoside."
* Added definition dbxref GOC:cb to GO:0008904
* Added definition dbxref GOC:mah to GO:0008904
* Changed synonym scope of GO:0008904 from "Exact" to "Narrow"
* Changed synonym scope of GO:0008904 from "Exact" to "Narrow"
* Changed synonym scope of GO:0008904 from "Exact" to "Narrow"
* Added synonym "destomic acid ring 7''-O-phosphotransferase activity" to GO:0008904
* Changed synonym scope of GO:0008904 from "Related" to "Exact"
* Added synonym "hygromycin B kinase activity" to GO:0008904
* Changed synonym scope of GO:0008904 from "Related" to "Narrow"
* Deleted GO:0008904 --OBO_REL:is_a--> GO:0016301
* Copied GO:0008904 to GO:0034071 with type OBO_REL:is_a
* Deleted GO:0008910 --OBO_REL:is_a--> GO:0016773
* Copied GO:0008910 to GO:0034071 with type OBO_REL:is_a
* Changed name of GO:0009012 from "streptomycin 3''-adenylyltransferase activity" to "aminoglycoside 3''-adenylyltransferase activity"
* Changed definition of GO:0009012 from "Catalysis of the reaction: ATP + streptomycin = diphosphate + 3''-adenylylstreptomycin." to "Catalysis of the reaction: ATP + aminoglycoside = diphosphate + 3''-adenylylaminoglycoside."
* Added definition dbxref GOC:cb to GO:0009012
* Deleted synonym "aminoglycoside 3''-adenylyltransferase activity" from GO:0009012
* Changed synonym scope of GO:0009012 from "Exact" to "Narrow"
* Deleted synonym "streptomycin adenylate synthetase activity" from GO:0009012
* Deleted synonym "streptomycin adenyltransferase activity" from GO:0009012
* Deleted synonym "streptomycin adenylylase activity" from GO:0009012
* Deleted synonym "streptomycin adenylyltransferase activity" from GO:0009012
* Deleted synonym "streptomycin-spectinomycin adenylyltransferase activity" from GO:0009012
* Added synonym "streptomycin 3''-adenylyltransferase activity" to GO:0009012
* Changed synonym scope of GO:0009012 from "Related" to "Narrow"
* Deleted GO:0009012 --OBO_REL:is_a--> GO:0016779
* Copied GO:0009012 to GO:0034068 with type OBO_REL:is_a
* Deleted synonym "outer membrane (sensu ProteoBacteria)" from GO:0009279
* Added synonym "outer membrane (sensu Proteobacteria)" to GO:0009279
* Changed synonym scope of GO:0009279 from "Related" to "Exact"
* Added synonym "oxidosqualene:cycloartenol cyclase activity" to GO:0016871
* Added general dbxref PMID:18033581 to synonym oxidosqualene:cycloartenol cyclase activity of GO:0016871
* Changed synonym scope of GO:0016871 from "Related" to "Exact"
* Deleted GO:0016991 --OBO_REL:is_a--> GO:0008080
* Destroyed object GO:0016991
* Changed name of GO:0030074 from "thylakoid (sensu ProteoBacteria)" to "thylakoid (sensu Proteobacteria)"
* Deleted synonym "light-harvesting complex (sensu ProteoBacteria)" from GO:0030077
* Added synonym "light-harvesting complex (sensu Proteobacteria)" to GO:0030077
* Changed synonym scope of GO:0030077 from "Related" to "Exact"
* Changed name of GO:0030090 from "reaction center (sensu ProteoBacteria)" to "reaction center (sensu Proteobacteria)"
* Deleted synonym "reaction centre (sensu ProteoBacteria)" from GO:0030090
* Added synonym "reaction centre (sensu Proteobacteria)" to GO:0030090
* Changed synonym scope of GO:0030090 from "Related" to "Exact"
* Deleted synonym "periplasmic space (sensu ProteoBacteria)" from GO:0030288
* Added synonym "periplasmic space (sensu Proteobacteria)" to GO:0030288
* Changed synonym scope of GO:0030288 from "Related" to "Exact"
* Deleted definition dbxref PMID:9700147 from GO:0030904
* Added definition dbxref PMID:9700157 to GO:0030904
* Deleted definition dbxref PMID:9700147 from GO:0030905
* Added definition dbxref PMID:9700157 to GO:0030905
* Deleted definition dbxref PMID:9700147 from GO:0030906
* Added definition dbxref PMID:9700157 to GO:0030906
* Deleted synonym "intrinsic to outer membrane (sensu ProteoBacteria)" from GO:0031230
* Added synonym "intrinsic to outer membrane (sensu Proteobacteria)" to GO:0031230
* Changed synonym scope of GO:0031230 from "Related" to "Exact"
* Deleted synonym "extrinsic to external side of plasma membrane, in periplasmic space (sensu ProteoBacteria)" from GO:0031236
* Added synonym "extrinsic to external side of plasma membrane, in periplasmic space (sensu Proteobacteria)" to GO:0031236
* Changed synonym scope of GO:0031236 from "Related" to "Exact"
* Deleted synonym "intrinsic to external side of plasma membrane, in periplasmic space (sensu ProteoBacteria)" from GO:0031237
* Added synonym "intrinsic to external side of plasma membrane, in periplasmic space (sensu Proteobacteria)" to GO:0031237
* Changed synonym scope of GO:0031237 from "Related" to "Exact"
* Deleted synonym "extrinsic to outer membrane (sensu ProteoBacteria)" from GO:0031244
* Added synonym "extrinsic to outer membrane (sensu Proteobacteria)" to GO:0031244
* Changed synonym scope of GO:0031244 from "Related" to "Exact"
* Changed name of GO:0031297 from "collapsed replication fork processing" to "replication fork processing"
* Added synonym "collapsed replication fork processing" to GO:0031297
* Changed synonym scope of GO:0031297 from "Related" to "Exact"
* Deleted GO:0031574 --OBO_REL:is_a--> GO:0031573
* Copied GO:0031574 to GO:0000077 with type OBO_REL:is_a
* Changed name of GO:0031582 from "replication fork blocking at rDNA repeats" to "replication fork arrest at rDNA repeats"
* Deleted synonym "replication fork blocking at ribosomal DNA repeats" from GO:0031582
* Added synonym "replication fork arrest at ribosomal DNA repeats" to GO:0031582
* Changed synonym scope of GO:0031582 from "Related" to "Exact"
* Added synonym "replication fork blocking at rDNA repeats" to GO:0031582
* Changed synonym scope of GO:0031582 from "Related" to "Exact"
* Copied GO:0031582 to GO:0043007 with type OBO_REL:is_a
* Deleted GO:0032429 --OBO_REL:is_a--> GO:0051336
* Copied GO:0032429 to GO:0060191 with type OBO_REL:is_a
* Changed definition of GO:0032807 from "A eukaryotically conserved protein complex that contains DNA ligase IV and is involved in DNA repair by non-homologous end joining; in addition to the ligase, the complex also contains XRCC4 or a homolog, e.g. Saccharomyces Lif4p." to "A eukaryotically conserved protein complex that contains DNA ligase IV and is involved in DNA repair by non-homologous end joining; in addition to the ligase, the complex also contains XRCC4 or a homolog, e.g. Saccharomyces Lif1p."
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"
* Added synonym "oxidosqualene:lupeol cyclase activity" to GO:0042299
* Added general dbxref PMID:18033581 to synonym oxidosqualene:lupeol cyclase activity of GO:0042299
* Changed synonym scope of GO:0042299 from "Related" to "Exact"
* Added synonym "oxidosqualene:beta-amyrin cyclase activity" to GO:0042300
* Added general dbxref PMID:18033581 to synonym oxidosqualene:beta-amyrin cyclase activity of GO:0042300
* Changed synonym scope of GO:0042300 from "Related" to "Exact"
* Deleted synonym "thylakoid (sensu ProteoBacteria)" from GO:0042716
* Added synonym "thylakoid (sensu Proteobacteria)" to GO:0042716
* Changed name of GO:0043111 from "replication fork blocking" to "replication fork arrest"
* Deleted synonym "replication fork arrest" from GO:0043111
* Added synonym "replication fork blocking" to GO:0043111
* Changed synonym scope of GO:0043111 from "Related" to "Exact"
* Deleted synonym "cell wall anabolism (sensu ProteoBacteria)" from GO:0043164
* Deleted synonym "cell wall assembly (sensu ProteoBacteria)" from GO:0043164
* Deleted synonym "cell wall biosynthetic process (sensu ProteoBacteria)" from GO:0043164
* Deleted synonym "cell wall formation (sensu ProteoBacteria)" from GO:0043164
* Deleted synonym "cell wall synthesis (sensu ProteoBacteria)" from GO:0043164
* Added synonym "cell wall anabolism (sensu Proteobacteria)" to GO:0043164
* Changed synonym scope of GO:0043164 from "Related" to "Exact"
* Added synonym "cell wall assembly (sensu Proteobacteria)" to GO:0043164
* Changed synonym scope of GO:0043164 from "Related" to "Exact"
* Added synonym "cell wall biosynthetic process (sensu Proteobacteria)" to GO:0043164
* Changed synonym scope of GO:0043164 from "Related" to "Exact"
* Added synonym "cell wall formation (sensu Proteobacteria)" to GO:0043164
* Changed synonym scope of GO:0043164 from "Related" to "Exact"
* Added synonym "cell wall synthesis (sensu Proteobacteria)" to GO:0043164
* Changed synonym scope of GO:0043164 from "Related" to "Exact"
* Changed name of GO:0043165 from "outer membrane biogenesis (sensu ProteoBacteria)" to "outer membrane biogenesis (sensu Proteobacteria)"
* Deleted synonym "integral to external membrane (sensu ProteoBacteria)" from GO:0045203
* Deleted synonym "integral to outer membrane (sensu ProteoBacteria)" from GO:0045203
* Added synonym "integral to external membrane (sensu Proteobacteria)" to GO:0045203
* Changed synonym scope of GO:0045203 from "Related" to "Exact"
* Added synonym "integral to outer membrane (sensu Proteobacteria)" to GO:0045203
* Changed synonym scope of GO:0045203 from "Related" to "Exact"
* Copied GO:0045458 to GO:0043007 with type OBO_REL:is_a
* Changed name of GO:0046353 from "aminoglycoside N3'-acetyltransferase activity" to "aminoglycoside 3-N-acetyltransferase activity"
* added secondary id GO:0016991 to GO:0046353
* Changed definition of GO:0046353 from "Catalysis of the reaction: acetyl-CoA + a 2-deoxystreptamine antibiotic = CoA + N3'-acetyl-2-deoxystreptamine antibiotic." to "Catalysis of the reaction: acetyl-CoA + aminoglycoside = CoA + 3-N-acetylaminoglycoside. This is acetylation of the 3-amino group of the central deoxystreptamine ring."
* Deleted definition dbxref EC:2.3.1.81 from GO:0046353
* Added definition dbxref GOC:cb to GO:0046353
* Added general dbxref EC:2.3.1.60 to GO:0046353
* Added general dbxref MetaCyc:GENTAMICIN-3'-N-ACETYLTRANSFERASE-RXN to GO:0046353
* Changed synonym scope of GO:0046353 from "Exact" to "Related"
* Added synonym "acetyl-CoA:gentamicin-C N3'-acetyltransferase activity" to GO:0046353
* Added general dbxref EC:2.3.1.60 to synonym acetyl-CoA:gentamicin-C N3'-acetyltransferase activity of GO:0046353
* Changed synonym scope of GO:0046353 from "Related" to "Narrow"
* Added synonym "aminoglycoside acetyltransferase AAC(3)-1" to GO:0046353
* Added general dbxref EC:2.3.1.60 to synonym aminoglycoside acetyltransferase AAC(3)-1 of GO:0046353
* Added synonym "aminoglycoside acetyltransferase AAC(3)-I activity" to GO:0046353
* Added general dbxref EC:2.3.1.60 to synonym aminoglycoside acetyltransferase AAC(3)-I activity of GO:0046353
* Added synonym "gentamicin 3'-N-acetyltransferase activity" to GO:0046353
* Changed synonym scope of GO:0046353 from "Related" to "Narrow"
* Added synonym "gentamicin acetyltransferase I activity" to GO:0046353
* Added general dbxref EC:2.3.1.60 to synonym gentamicin acetyltransferase I activity of GO:0046353
* Changed synonym scope of GO:0046353 from "Related" to "Narrow"
* Added synonym "gentamycin 3'-N-acetyltransferase activity" to GO:0046353
* Changed synonym scope of GO:0046353 from "Related" to "Exact"
* Added synonym "gentamycin acetyltransferase I" to GO:0046353
* Added general dbxref EC:2.3.1.60 to synonym gentamycin acetyltransferase I of GO:0046353
* Deleted GO:0046353 --OBO_REL:is_a--> GO:0008080
* Copied GO:0046353 to GO:0034069 with type OBO_REL:is_a
* Deleted GO:0047333 --OBO_REL:is_a--> GO:0016773
* Copied GO:0047333 to GO:0034071 with type OBO_REL:is_a
* Changed name of GO:0047663 from "aminoglycoside N6'-acetyltransferase activity" to "aminoglycoside 6'-N-acetyltransferase activity"
* Changed definition of GO:0047663 from "Catalysis of the reaction: acetyl-CoA + kanamycin-B = CoA + N6'-acetylkanamycin-B." to "Catalysis of the reaction: acetyl-CoA + aminoglycoside = CoA + 6'-N-acetylaminoglycoside. This is acetylation of the 6'-amino group of the 6-deoxy-6-aminoglucose ring."
* Deleted definition dbxref EC:2.3.1.82 from GO:0047663
* Deleted definition dbxref MetaCyc:AMINOGLYCOSIDE-N6'-ACETYLTRANSFERASE-RXN from GO:0047663
* Added definition dbxref GOC:cb to GO:0047663
* Changed synonym scope of GO:0047663 from "Exact" to "Related"
* Changed synonym scope of GO:0047663 from "Exact" to "Narrow"
* Deleted synonym "aminoglycoside 6'-N-acetyltransferase activity" from GO:0047663
* Changed synonym scope of GO:0047663 from "Exact" to "Related"
* Changed synonym scope of GO:0047663 from "Exact" to "Narrow"
* Deleted synonym "kanamycin acetyltransferase activity" from GO:0047663
* Added synonym "aminoglycoside N6'-acetyltransferase activity" to GO:0047663
* Changed synonym scope of GO:0047663 from "Related" to "Exact"
* Deleted GO:0047663 --OBO_REL:is_a--> GO:0008080
* Copied GO:0047663 to GO:0034069 with type OBO_REL:is_a
* Changed name of GO:0047921 from "gentamycin 2'-N-acetyltransferase activity" to "aminoglycoside 2'-N-acetyltransferase activity"
* Changed definition of GO:0047921 from "Catalysis of the reaction: acetyl-CoA + gentamycin C1a = CoA + N2'-acetylgentamycin C1a." to "Catalysis of the reaction: acetyl-CoA + aminoglycoside = CoA + 2'-N-acetylaminoglycoside. This is acetylation of the 2'-amino group of the 6-deoxy-6-aminoglucose ring."
* Deleted definition dbxref EC:2.3.1.59 from GO:0047921
* Deleted definition dbxref MetaCyc:GENTAMICIN-2'-N-ACETYLTRANSFERASE-RXN from GO:0047921
* Added definition dbxref GOC:cb to GO:0047921
* Changed synonym scope of GO:0047921 from "Exact" to "Narrow"
* Changed synonym scope of GO:0047921 from "Exact" to "Narrow"
* Changed synonym scope of GO:0047921 from "Exact" to "Narrow"
* Changed synonym scope of GO:0047921 from "Exact" to "Narrow"
* Added synonym "gentamycin 2'-N-acetyltransferase activity" to GO:0047921
* Changed synonym scope of GO:0047921 from "Related" to "Narrow"
* Deleted GO:0047921 --OBO_REL:is_a--> GO:0008080
* Copied GO:0047921 to GO:0034069 with type OBO_REL:is_a
* Deleted synonym "RubisCO complex (sensu ProteoBacteria)" from GO:0048494
* Added synonym "RubisCO complex (sensu Proteobacteria)" to GO:0048494
* Changed synonym scope of GO:0048494 from "Related" to "Exact"
* Deleted GO:0050299 --OBO_REL:is_a--> GO:0016301
* Copied GO:0050299 to GO:0034071 with type OBO_REL:is_a
* Changed name of GO:0050300 from "streptomycin 6-kinase activity" to "aminoglycoside 6-kinase activity"
* Changed synonym scope of GO:0050300 from "Exact" to "Narrow"
* Changed synonym scope of GO:0050300 from "Exact" to "Narrow"
* Changed synonym scope of GO:0050300 from "Exact" to "Narrow"
* Changed synonym scope of GO:0050300 from "Exact" to "Narrow"
* Changed synonym scope of GO:0050300 from "Exact" to "Narrow"
* Changed synonym scope of GO:0050300 from "Exact" to "Narrow"
* Changed synonym scope of GO:0050300 from "Exact" to "Narrow"
* Added synonym "streptomycin 6-kinase activity" to GO:0050300
* Changed synonym scope of GO:0050300 from "Related" to "Narrow"
* Deleted GO:0050300 --OBO_REL:is_a--> GO:0016301
* Copied GO:0050300 to GO:0034071 with type OBO_REL:is_a
* Deleted GO:0051004 --OBO_REL:is_a--> GO:0051336
* Copied GO:0051004 to GO:0060191 with type OBO_REL:is_a
* Added synonym "squalene:hopene cyclase activity" to GO:0051007
* Added general dbxref PMID:18033581 to synonym squalene:hopene cyclase activity of GO:0051007
* Deleted GO:0051007 --OBO_REL:is_a--> GO:0009975
* Copied GO:0051007 to GO:0034072 with type OBO_REL:is_a
* Changed definition of GO:0065005 from "The aggregation, arrangement and bonding together of proteins and lipids to form a protein-DNA complex." to "The aggregation, arrangement and bonding together of proteins and lipids to form a protein-lipid complex."


From gocvs at genome.Stanford.EDU  Tue Jan  8 21:30:45 2008
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Tue, 8 Jan 2008 21:30:45 -0800 (PST)
Subject: [go-diff] GO update 01/08/2008
Message-ID: <200801090530.VAA11603@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.636 by 5.638

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034077
* Created object of type obo:TERM with id GO:0034078
* Created object of type obo:TERM with id GO:0034079
* Created object of type obo:TERM with id GO:0034080
* Created object of type obo:TERM with id GO:0034081
* Created object of type obo:TERM with id GO:0034082
* Created object of type obo:TERM with id GO:0034083
* Created object of type obo:TERM with id GO:0034084
* Populated new object GO:0034077 (macro)
  * Changed name of GO:0034077 from "<new term>" to "butanediol metabolic process"
  * Set definition of GO:0034077 to "The chemical reactions and pathways involving butanediol; the biologically relevant isomer is 2,3-butanediol, CH3CH(OH)CH(OH)CH3."
  * Added definition dbxref ISBN:0911910123 to GO:0034077
  * Added definition dbxref MetaCyc:BUTANEDIOL to GO:0034077
  * Added definition dbxref MetaCyc:P125-PWY to GO:0034077
  * Added GO:0034077 to category gosubset_prok
  * Added synonym "butanediol metabolism" to GO:0034077
  * Changed synonym scope of GO:0034077 from "Related" to "Exact"
  * Added synonym "butylene glycol metabolic process" to GO:0034077
  * Changed synonym scope of GO:0034077 from "Related" to "Exact"
  * Added synonym "butylene glycol metabolism" to GO:0034077
  * Changed synonym scope of GO:0034077 from "Related" to "Exact"
  * Copied GO:0034077 to GO:0019751 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034077
* Populated new object GO:0034078 (macro)
  * Changed name of GO:0034078 from "<new term>" to "butanediol catabolic process"
  * Set definition of GO:0034078 to "The chemical reactions and pathways resulting in the breakdown of butanediol; the biologically relevant isomer is 2,3-butanediol, CH3CH(OH)CH(OH)CH3."
  * Added definition dbxref GOC:mah to GO:0034078
  * Added definition dbxref ISBN:0911910123 to GO:0034078
  * Added definition dbxref MetaCyc:125-PWY to GO:0034078
  * Added definition dbxref MetaCyc:BUTANEDIOL to GO:0034078
  * Added GO:0034078 to category gosubset_prok
  * Added synonym "butanediol breakdown" to GO:0034078
  * Changed synonym scope of GO:0034078 from "Related" to "Exact"
  * Added synonym "butanediol catabolism" to GO:0034078
  * Changed synonym scope of GO:0034078 from "Related" to "Exact"
  * Added synonym "butanediol degradation" to GO:0034078
  * Changed synonym scope of GO:0034078 from "Related" to "Exact"
  * Added synonym "butanediol utilization" to GO:0034078
  * Added synonym "butylene glycol catabolic process" to GO:0034078
  * Changed synonym scope of GO:0034078 from "Related" to "Exact"
  * Added synonym "butylene glycol catabolism" to GO:0034078
  * Changed synonym scope of GO:0034078 from "Related" to "Exact"
  * Copied GO:0034078 to GO:0034077 with type OBO_REL:is_a
  * Copied GO:0034078 to GO:0046174 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034078
* Populated new object GO:0034079 (macro)
  * Changed name of GO:0034079 from "<new term>" to "butanediol biosynthetic process"
  * Set definition of GO:0034079 to "The chemical reactions and pathways resulting in the formation of butanediol; the biologically relevant isomer is 2,3-butanediol, CH3CH(OH)CH(OH)CH3."
  * Added definition dbxref GOC:mah to GO:0034079
  * Added definition dbxref ISBN:0911910123 to GO:0034079
  * Added definition dbxref MetaCyc:125-PWY to GO:0034079
  * Added definition dbxref MetaCyc:BUTANEDIOL to GO:0034079
  * Added general dbxref MetaCyc:P125-PWY to GO:0034079
  * Added GO:0034079 to category gosubset_prok
  * Added synonym "butanediol anabolism" to GO:0034079
  * Changed synonym scope of GO:0034079 from "Related" to "Exact"
  * Added synonym "butanediol biosynthesis" to GO:0034079
  * Changed synonym scope of GO:0034079 from "Related" to "Exact"
  * Added synonym "butanediol formation" to GO:0034079
  * Changed synonym scope of GO:0034079 from "Related" to "Exact"
  * Added synonym "butanediol synthesis" to GO:0034079
  * Changed synonym scope of GO:0034079 from "Related" to "Exact"
  * Added synonym "butylene glycol biosynthesis" to GO:0034079
  * Changed synonym scope of GO:0034079 from "Related" to "Exact"
  * Added synonym "butylene glycol biosynthetic process" to GO:0034079
  * Changed synonym scope of GO:0034079 from "Related" to "Exact"
  * Copied GO:0034079 to GO:0034077 with type OBO_REL:is_a
  * Copied GO:0034079 to GO:0046173 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034079
* Populated new object GO:0034080 (macro)
  * Changed name of GO:0034080 from "<new term>" to "DNA replication-independent nucleosome assembly at centromere"
  * Set definition of GO:0034080 to "The formation of nucleosomes containing the histone H3 variant CENP-A to form centromeric chromatin; occurs outside the context of DNA replication."
  * Added definition dbxref GOC:mah to GO:0034080
  * Added definition dbxref PMID:18158900 to GO:0034080
  * Added synonym "centromeric DNA replication-independent nucleosome assembly" to GO:0034080
  * Changed synonym scope of GO:0034080 from "Related" to "Exact"
  * Copied GO:0034080 to GO:0031055 with type OBO_REL:is_a
  * Copied GO:0034080 to GO:0006336 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034080
* Populated new object GO:0034081 (macro)
  * Changed name of GO:0034081 from "<new term>" to "polyketide synthase complex"
  * Set definition of GO:0034081 to "A protein complex that carries out enzymatic reactions involved in the biosynthesis of polyketides, any of a diverse group of natural products synthesized via linear poly-beta-ketones."
  * Added definition dbxref GOC:mah to GO:0034081
  * Added definition dbxref PMID:12636085 to GO:0034081
  * Added synonym "PKS" to GO:0034081
  * Added synonym "PKS complex" to GO:0034081
  * Changed synonym scope of GO:0034081 from "Related" to "Exact"
  * Copied GO:0034081 to GO:0043234 with type OBO_REL:is_a
  * Copied GO:0034081 to GO:0044444 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034081
* Populated new object GO:0034082 (macro)
  * Changed name of GO:0034082 from "<new term>" to "type II polyketide synthase complex"
  * Set definition of GO:0034082 to "A polyketide synthase complex that consists of several different polypeptide chains, each of which catalyzes a single reaction."
  * Added definition dbxref GOC:cb to GO:0034082
  * Added definition dbxref GOC:mah to GO:0034082
  * Added definition dbxref PMID:12636085 to GO:0034082
  * Added synonym "type II PKS" to GO:0034082
  * Changed synonym scope of GO:0034082 from "Related" to "Exact"
  * Added synonym "type II PKS complex" to GO:0034082
  * Changed synonym scope of GO:0034082 from "Related" to "Exact"
  * Added synonym "type II polyketide synthase" to GO:0034082
  * Changed synonym scope of GO:0034082 from "Related" to "Exact"
  * Copied GO:0034082 to GO:0034081 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034082
* Populated new object GO:0034083 (macro)
  * Changed name of GO:0034083 from "<new term>" to "type III polyketide synthase complex"
  * Set definition of GO:0034083 to "A polyketide synthase complex that consists of two identical ketosynthase polypeptides."
  * Added definition dbxref GOC:cb to GO:0034083
  * Added definition dbxref PMID:12636085 to GO:0034083
  * Added synonym "type III PKS" to GO:0034083
  * Changed synonym scope of GO:0034083 from "Related" to "Exact"
  * Added synonym "type III PKS complex" to GO:0034083
  * Changed synonym scope of GO:0034083 from "Related" to "Exact"
  * Added synonym "type III polyketide synthase" to GO:0034083
  * Changed synonym scope of GO:0034083 from "Related" to "Exact"
  * Copied GO:0034083 to GO:0034081 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034083
* Populated new object GO:0034084 (macro)
  * Changed name of GO:0034084 from "<new term>" to "steryl deacetylase activity"
  * Set definition of GO:0034084 to "Catalysis of the hydrolysis of an acetyl group or groups from an acetylated sterol."
  * Added definition dbxref GOC:rb to GO:0034084
  * Added definition dbxref PMID:18034159 to GO:0034084
  * Added synonym "sterol deacetylase activity" to GO:0034084
  * Changed synonym scope of GO:0034084 from "Related" to "Exact"
  * Copied GO:0034084 to GO:0019213 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034084
* Added synonym "FAS complex" to GO:0005835
* Changed synonym scope of GO:0005835 from "Related" to "Exact"
* Copied GO:0019650 to GO:0034077 with type OBO_REL:is_a
* Deleted synonym "neocortex development" from GO:0021903
* Added synonym "neocortex development" to GO:0021987
* Added general dbxref GOC:dph to synonym neocortex development of GO:0021987
* Changed synonym scope of GO:0030315 from "Exact" to "Related"
* Added synonym "cytosolic FAS complex" to GO:0031373
* Changed synonym scope of GO:0031373 from "Related" to "Exact"
* Added synonym "cytosolic type I FAS complex" to GO:0031374
* Changed synonym scope of GO:0031374 from "Related" to "Exact"
* Added synonym "type II FAS" to GO:0031375
* Changed synonym scope of GO:0031375 from "Related" to "Exact"
* Added synonym "type II FAS complex" to GO:0031375
* Changed synonym scope of GO:0031375 from "Related" to "Exact"
* Added synonym "type II fatty acid synthase" to GO:0031375
* Changed synonym scope of GO:0031375 from "Related" to "Exact"
* Added synonym "cytosolic type II FAS complex" to GO:0031376
* Changed synonym scope of GO:0031376 from "Related" to "Exact"
* Added synonym "mitochondrial type II FAS complex" to GO:0031377
* Changed synonym scope of GO:0031377 from "Related" to "Exact"
* Added synonym "plastid type II FAS complex" to GO:0031378
* Changed synonym scope of GO:0031378 from "Related" to "Exact"
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"


From gocvs at genome.Stanford.EDU  Wed Jan  9 21:30:44 2008
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Wed, 9 Jan 2008 21:30:44 -0800 (PST)
Subject: [go-diff] GO update 01/09/2008
Message-ID: <200801100530.VAA21351@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.638 by 5.640

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010503
* Created object of type obo:TERM with id GO:0010504
* Created object of type obo:TERM with id GO:0010505
* Created object of type obo:TERM with id GO:0010506
* Created object of type obo:TERM with id GO:0010507
* Created object of type obo:TERM with id GO:0010508
* Created object of type obo:TERM with id GO:0010509
* Created object of type obo:TERM with id GO:0010510
* Populated new object GO:0010503 (macro)
  * Changed name of GO:0010503 from "<new term>" to "negative regulation of cell cycle arrest in response to nitrogen starvation"
  * Set definition of GO:0010503 to "Any process that stops, prevents or reduces the frequency or rate of cell cycle arrest in response to nitrogen starvation."
  * Added definition dbxref GOC:dph to GO:0010503
  * Added definition dbxref GOC:tb to GO:0010503
  * Copied GO:0010503 to GO:0010504 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010503
* Populated new object GO:0010504 (macro)
  * Changed name of GO:0010504 from "<new term>" to "regulation of cell cycle arrest in response to nitrogen starvation"
  * Set definition of GO:0010504 to "Any process that modulates the frequency, rate or extent of cell cycle arrest in response to nitrogen starvation."
  * Added definition dbxref GOC:dph to GO:0010504
  * Added definition dbxref GOC:tb to GO:0010504
  * Copied GO:0010504 to GO:0030996 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010504
* Populated new object GO:0010505 (macro)
  * Changed name of GO:0010505 from "<new term>" to "positive regulation of cell cycle arrest in response to nitrogen starvation"
  * Set definition of GO:0010505 to "Any process that increases the frequency or rate of cell cycle arrest in response to nitrogen starvation."
  * Added definition dbxref GOC:dph to GO:0010505
  * Added definition dbxref GOC:tb to GO:0010505
  * Copied GO:0010505 to GO:0010504 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010505
* Populated new object GO:0010506 (macro)
  * Changed name of GO:0010506 from "<new term>" to "regulation of autophagy"
  * Set definition of GO:0010506 to "Any process that modulates the frequency, rate or extent of autophagy. Autophagy is the process by which cells digest parts of their own cytoplasm."
  * Added definition dbxref GOC:dph to GO:0010506
  * Added definition dbxref GOC:tb to GO:0010506
  * Copied GO:0010506 to GO:0006914 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010506
* Populated new object GO:0010507 (macro)
  * Changed name of GO:0010507 from "<new term>" to "negative regulation of autophagy"
  * Set definition of GO:0010507 to "Any process that stops, prevents or reduces the frequency, rate or extent of autophagy. Autophagy is the process by which cells digest parts of their own cytoplasm."
  * Added definition dbxref GOC:dph to GO:0010507
  * Added definition dbxref GOC:tb to GO:0010507
  * Copied GO:0010507 to GO:0010506 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010507
* Populated new object GO:0010508 (macro)
  * Changed name of GO:0010508 from "<new term>" to "positive regulation of autophagy"
  * Set definition of GO:0010508 to "Any process that activates, maintains or increases the rate of autophagy. Autophagy is the process by which cells digest parts of their own cytoplasm."
  * Added definition dbxref GOC:dph to GO:0010508
  * Added definition dbxref GOC:tb to GO:0010508
  * Copied GO:0010508 to GO:0010506 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010508
* Populated new object GO:0010509 (macro)
  * Changed name of GO:0010509 from "<new term>" to "polyamine homeostasis"
  * Set definition of GO:0010509 to "The biological processes involved in the maintenance of an internal equilibrium of a polyamine."
  * Added definition dbxref GOC:dph to GO:0010509
  * Added definition dbxref GOC:rh to GO:0010509
  * Added definition dbxref GOC:tb to GO:0010509
  * Added definition dbxref PMID:11161802 to GO:0010509
  * Added definition dbxref PMID:9761731 to GO:0010509
  * Copied GO:0010509 to GO:0048878 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010509
* Populated new object GO:0010510 (macro)
  * Changed name of GO:0010510 from "<new term>" to "regulation of acetyl-CoA biosynthetic process from pyruvate"
  * Set definition of GO:0010510 to "Any process that modulates the
frequency, rate or extent of the chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate."
  * Added definition dbxref GOC:dph to GO:0010510
  * Added definition dbxref GOC:tb to GO:0010510
  * Copied GO:0010510 to GO:0031326 with type OBO_REL:is_a
  * Copied GO:0010510 to GO:0006086 with type part_of
  * Assigned namespace "biological_process" to GO:0010510
* Changed definition of GO:0006086 from "The chemical reactions and pathways resulting in the formation of acetyl-CoA from other compounds, including pyruvate." to "The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate."
* Added definition dbxref GOC:dph to GO:0006086
* Added definition dbxref GOC:tb to GO:0006086
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"


From gocvs at genome.Stanford.EDU  Thu Jan 10 21:30:44 2008
From: gocvs at genome.Stanford.EDU (Remote CVS for Gene Ontology)
Date: Thu, 10 Jan 2008 21:30:44 -0800 (PST)
Subject: [go-diff] GO update 01/10/2008
Message-ID: <200801110530.VAA03507@bread.Stanford.EDU>

OBODIFF of gene_ontology_edit.obo version 5.640 by 5.641

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Changed definition of GO:0000709 from "The conversion of the paired broken DNA and homologous duplex DNA into a four-stranded branched intermediate, known as a joint molecule. These joint molecules contain Holliday junctions on either side of heteroduplex DNA." to "The conversion of the paired broken DNA and homologous duplex DNA into a four-stranded branched intermediate, known as a joint molecule, formed during meiotic recombination. These joint molecules contain Holliday junctions on either side of heteroduplex DNA."
* Changed definition of GO:0000775 from "The central region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes, this region corresponds to a single
area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome." to "The central region of a chromosome that includes the centromere and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome."
* Changed definition of GO:0000779 from "The central region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single
area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome." to "The central region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome."
* Changed definition of GO:0000780 from "The central region of a condensed chromosome in the nucleus that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single
area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome." to "The central region of a condensed chromosome in the nucleus that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome."
* Changed definition of GO:0010510 from "Any process that modulates the
frequency, rate or extent of the chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate." to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of acety