[go-diff] GO update 01/07/2008
Remote CVS for Gene Ontology
gocvs at genome.Stanford.EDU
Mon Jan 7 21:30:44 PST 2008
OBODIFF of gene_ontology_edit.obo version 5.632 by 5.636
Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034065
* Created object of type obo:TERM with id GO:0034066
* Created object of type obo:TERM with id GO:0034067
* Created object of type obo:TERM with id GO:0034068
* Created object of type obo:TERM with id GO:0034069
* Created object of type obo:TERM with id GO:0034070
* Created object of type obo:TERM with id GO:0034071
* Created object of type obo:TERM with id GO:0034072
* Created object of type obo:TERM with id GO:0034073
* Created object of type obo:TERM with id GO:0034074
* Created object of type obo:TERM with id GO:0034075
* Created object of type obo:TERM with id GO:0034076
* Created object of type obo:TERM with id GO:0060188
* Created object of type obo:TERM with id GO:0060189
* Created object of type obo:TERM with id GO:0060190
* Created object of type obo:TERM with id GO:0060191
* Created object of type obo:TERM with id GO:0060192
* Created object of type obo:TERM with id GO:0060193
* Created object of type obo:TERM with id GO:0060194
* Created object of type obo:TERM with id GO:0060195
* Created object of type obo:TERM with id GO:0060196
* Populated new object GO:0034065 (macro)
* Changed name of GO:0034065 from "<new term>" to "replication fork processing at rDNA locus"
* Set definition of GO:0034065 to "The process by which a DNA replication fork that has stalled at the rDNA replication fork barrier (RFB) is repaired and replication is restarted."
* Added definition dbxref GOC:vw to GO:0034065
* Added synonym "recovery from replication fork arrest at rDNA locus" to GO:0034065
* Changed synonym scope of GO:0034065 from "Related" to "Exact"
* Added synonym "recovery from replication fork stalling at rDNA locus" to GO:0034065
* Changed synonym scope of GO:0034065 from "Related" to "Exact"
* Added synonym "replication fork processing at ribosomal DNA locus" to GO:0034065
* Changed synonym scope of GO:0034065 from "Related" to "Exact"
* Copied GO:0034065 to GO:0031297 with type OBO_REL:is_a
* Copied GO:0034065 to GO:0043007 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034065
* Populated new object GO:0034066 (macro)
* Changed name of GO:0034066 from "<new term>" to "Ric1p-Rgp1p complex"
* Set definition of GO:0034066 to "A protein complex that acts as a nucleotide exchange factor for the GTPase Ypt6p, and is required for fusion of endosome-derived vesicles with the Golgi."
* Added definition dbxref GOC:jh to GO:0034066
* Added definition dbxref GOC:mah to GO:0034066
* Added definition dbxref PMID:10990452 to GO:0034066
* Copied GO:0034066 to GO:0043234 with type OBO_REL:is_a
* Copied GO:0034066 to GO:0044431 with type OBO_REL:is_a
* Assigned namespace "cellular_component" to GO:0034066
* Populated new object GO:0034067 (macro)
* Changed name of GO:0034067 from "<new term>" to "protein localization in Golgi apparatus"
* Set definition of GO:0034067 to "A process by which a protein is transported to, or maintained in, a location within the Golgi apparatus."
* Added definition dbxref GOC:mah to GO:0034067
* Copied GO:0034067 to GO:0033365 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034067
* Populated new object GO:0034068 (macro)
* Changed name of GO:0034068 from "<new term>" to "aminoglycoside nucleotidyltransferase activity"
* Set definition of GO:0034068 to "Catalysis of the reaction nucleoside
triphosphate + aminoglycoside = diphosphate + nucleotidylaminoglycoside."
* Added definition dbxref GOC:cb to GO:0034068
* Added synonym "aminoglycoside adenylyltransferase activity" to GO:0034068
* Changed synonym scope of GO:0034068 from "Related" to "Narrow"
* Added synonym "streptomycin adenylate synthetase activity" to GO:0034068
* Added general dbxref EC:2.7.7.47 to synonym streptomycin adenylate synthetase activity of GO:0034068
* Changed synonym scope of GO:0034068 from "Related" to "Narrow"
* Added synonym "streptomycin adenyltransferase activity" to GO:0034068
* Added general dbxref EC:2.7.7.47 to synonym streptomycin adenyltransferase activity of GO:0034068
* Changed synonym scope of GO:0034068 from "Related" to "Narrow"
* Added synonym "streptomycin adenylylase activity" to GO:0034068
* Added general dbxref EC:2.7.7.47 to synonym streptomycin adenylylase activity of GO:0034068
* Changed synonym scope of GO:0034068 from "Related" to "Narrow"
* Added synonym "streptomycin adenylyltransferase activity" to GO:0034068
* Added general dbxref EC:2.7.7.47 to synonym streptomycin adenylyltransferase activity of GO:0034068
* Changed synonym scope of GO:0034068 from "Related" to "Narrow"
* Added synonym "streptomycin-spectinomycin adenylyltransferase activity" to GO:0034068
* Added general dbxref EC:2.7.7.47 to synonym streptomycin-spectinomycin adenylyltransferase activity of GO:0034068
* Changed synonym scope of GO:0034068 from "Related" to "Narrow"
* Copied GO:0034068 to GO:0016779 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0034068
* Populated new object GO:0034069 (macro)
* Changed name of GO:0034069 from "<new term>" to "aminoglycoside N-acetyltransferase activity"
* Set definition of GO:0034069 to "Catalysis of the reaction: acetyl-CoA + aminoglycoside = CoA + N-acetylaminoglycoside."
* Added definition dbxref GOC:cb to GO:0034069
* Added synonym "kanamycin acetyltransferase activity" to GO:0034069
* Changed synonym scope of GO:0034069 from "Related" to "Narrow"
* Copied GO:0034069 to GO:0008080 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0034069
* Populated new object GO:0034070 (macro)
* Changed name of GO:0034070 from "<new term>" to "aminoglycoside 1-N-acetyltransferase activity"
* Set definition of GO:0034070 to "Catalysis of the reaction: acetyl-CoA + aminoglycoside = CoA +
1-N-acetylaminoglycoside. This is acetylation of the 1-amino group of the
central deoxystreptamine ring."
* Added definition dbxref GOC:cb to GO:0034070
* Copied GO:0034070 to GO:0034069 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0034070
* Populated new object GO:0034071 (macro)
* Changed name of GO:0034071 from "<new term>" to "aminoglycoside phosphotransferase activity"
* Set definition of GO:0034071 to "Catalysis of the reaction: ATP + aminoglycoside = ADP + phosphoaminoglycoside."
* Added definition dbxref GOC:cb to GO:0034071
* Added definition dbxref GOC:mah to GO:0034071
* Added general dbxref EC:2.7.1.119 to GO:0034071
* Added general dbxref MetaCyc:HYGROMYCIN-B-KINASE-RXN to GO:0034071
* Added GO:0034071 to category gosubset_prok
* Added synonym "aminoglycoside kinase activity" to GO:0034071
* Changed synonym scope of GO:0034071 from "Related" to "Exact"
* Copied GO:0034071 to GO:0016773 with type OBO_REL:is_a
* Copied GO:0034071 to GO:0016301 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0034071
* Populated new object GO:0034072 (macro)
* Changed name of GO:0034072 from "<new term>" to "squalene cyclase activity"
* Set definition of GO:0034072 to "Catalysis of the reaction: squalene = triterpene."
* Added definition dbxref GOC:cb to GO:0034072
* Added definition dbxref PMID:18033581 to GO:0034072
* Copied GO:0034072 to GO:0009975 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0034072
* Populated new object GO:0034073 (macro)
* Changed name of GO:0034073 from "<new term>" to "tetrahymanol cyclase activity"
* Set definition of GO:0034073 to "Catalysis of the reaction: squalene = tetrahymanol."
* Added definition dbxref ChEBI:9493 to GO:0034073
* Added definition dbxref GOC:cb to GO:0034073
* Added definition dbxref PMID:18033581 to GO:0034073
* Copied GO:0034073 to GO:0034072 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0034073
* Populated new object GO:0034074 (macro)
* Changed name of GO:0034074 from "<new term>" to "marneral synthase activity"
* Set definition of GO:0034074 to "Catalysis of the reaction: oxidosqualene = marneral."
* Added definition dbxref GOC:cb to GO:0034074
* Added definition dbxref http://www.wiley-vch.de/contents/jc_2002/2006/z503420_s.pdf to GO:0034074
* Added definition dbxref PMID:16425307 to GO:0034074
* Added definition dbxref PMID:18033581 to GO:0034074
* Copied GO:0034074 to GO:0031559 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0034074
* Populated new object GO:0034075 (macro)
* Changed name of GO:0034075 from "<new term>" to "arabidiol synthase activity"
* Set definition of GO:0034075 to "Catalysis of the reaction: oxidosqualene = arabidiol ((3S,13R,14R)-malabarica-17E,21-dien-3beta,14-diol)."
* Added definition dbxref GOC:cb to GO:0034075
* Added definition dbxref PMID:18033581 to GO:0034075
* Copied GO:0034075 to GO:0031559 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0034075
* Populated new object GO:0034076 (macro)
* Changed name of GO:0034076 from "<new term>" to "cucurbitadienol synthase activity"
* Set definition of GO:0034076 to "Catalysis of the reaction: oxidosqualene = cucurbitadienol."
* Added definition dbxref GOC:cb to GO:0034076
* Added definition dbxref http:/beta.uniprot.org/uniprot/Q6BE24 to GO:0034076
* Added definition dbxref PMID:18033581 to GO:0034076
* Copied GO:0034076 to GO:0031559 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0034076
* Populated new object GO:0060188 (macro)
* Changed name of GO:0060188 from "<new term>" to "regulation of protein desumoylation"
* Set definition of GO:0060188 to "Any process that modulates the frequency, rate or extent of protein desumoylation. Protein desumoylation is the process by which a SUMO protein (small ubiquitin-related modifier) is cleaved from its target protein."
* Added definition dbxref GOC:dph to GO:0060188
* Added definition dbxref GOC:tb to GO:0060188
* Copied GO:0060188 to GO:0016926 with type part_of
* Copied GO:0060188 to GO:0031399 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060188
* Populated new object GO:0060189 (macro)
* Changed name of GO:0060189 from "<new term>" to "positive regulation of protein desumoylation"
* Set definition of GO:0060189 to "Any process that increases the frequency, rate or extent of protein desumoylation. Protein desumoylation is the process by which a SUMO protein (small ubiquitin-related modifier) is cleaved from its target protein."
* Added definition dbxref GOC:dph to GO:0060189
* Added definition dbxref GOC:tb to GO:0060189
* Copied GO:0060189 to GO:0060188 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060189
* Populated new object GO:0060190 (macro)
* Changed name of GO:0060190 from "<new term>" to "negative regulation of protein desumoylation"
* Set definition of GO:0060190 to "Any process that decreases the frequency, rate or extent of protein desumoylation. Protein desumoylation is the process by which a SUMO protein (small ubiquitin-related modifier) is cleaved from its target protein."
* Added definition dbxref GOC:dph to GO:0060190
* Added definition dbxref GOC:tb to GO:0060190
* Copied GO:0060190 to GO:0060188 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060190
* Populated new object GO:0060191 (macro)
* Changed name of GO:0060191 from "<new term>" to "regulation of lipase activity"
* Set definition of GO:0060191 to "Any process that modulates the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid."
* Added definition dbxref GOC:dph to GO:0060191
* Added definition dbxref GOC:tb to GO:0060191
* Copied GO:0060191 to GO:0051336 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060191
* Populated new object GO:0060192 (macro)
* Changed name of GO:0060192 from "<new term>" to "negative regulation of lipase activity"
* Set definition of GO:0060192 to "Any process that decreases the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid."
* Added definition dbxref GOC:dph to GO:0060192
* Added definition dbxref GOC:tb to GO:0060192
* Copied GO:0060192 to GO:0060191 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060192
* Populated new object GO:0060193 (macro)
* Changed name of GO:0060193 from "<new term>" to "positive regulation of lipase activity"
* Set definition of GO:0060193 to "Any process that increases the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid."
* Added definition dbxref GOC:dph to GO:0060193
* Added definition dbxref GOC:tb to GO:0060193
* Copied GO:0060193 to GO:0060191 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060193
* Populated new object GO:0060194 (macro)
* Changed name of GO:0060194 from "<new term>" to "regulation of antisense RNA transcription"
* Set definition of GO:0060194 to "Any process that modulates the frequency, rate or extent of the synthesis of antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis, on a template of DNA."
* Added definition dbxref GOC:dph to GO:0060194
* Added definition dbxref GOC:jp to GO:0060194
* Added definition dbxref GOC:tb to GO:0060194
* Added definition dbxref PMID:18075583 to GO:0060194
* Copied GO:0060194 to GO:0009300 with type part_of
* Copied GO:0060194 to GO:0006355 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060194
* Populated new object GO:0060195 (macro)
* Changed name of GO:0060195 from "<new term>" to "negative regulation of antisense RNA transcription"
* Set definition of GO:0060195 to "Any process that decreases the frequency, rate or extent of the synthesis of antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis, on a template of DNA."
* Added definition dbxref GOC:dph to GO:0060195
* Added definition dbxref GOC:tb to GO:0060195
* Added definition dbxref PMID:18075583 to GO:0060195
* Copied GO:0060195 to GO:0060194 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060195
* Populated new object GO:0060196 (macro)
* Changed name of GO:0060196 from "<new term>" to "positive regulation of antisense RNA transcription"
* Set definition of GO:0060196 to "Any process that increases the frequency, rate or extent of the synthesis of antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis, on a template of DNA."
* Added definition dbxref GOC:dph to GO:0060196
* Added definition dbxref GOC:tb to GO:0060196
* Added definition dbxref PMID:18075583 to GO:0060196
* Copied GO:0060196 to GO:0060194 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060196
* Added synonym "oxidosqualene:lanosterol cyclase activity" to GO:0000250
* Added general dbxref PMID:18033581 to synonym oxidosqualene:lanosterol cyclase activity of GO:0000250
* Changed synonym scope of GO:0000250 from "Related" to "Exact"
* Copied GO:0001555 to GO:0048588 with type OBO_REL:is_a
* Changed definition of GO:0006890 from "The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by COP I vesicles." to "The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG."
* Added definition dbxref PMID:16510524 to GO:0006890
* Deleted GO:0007285 --OBO_REL:is_a--> GO:0016049
* Copied GO:0007285 to GO:0048588 with type OBO_REL:is_a
* Deleted GO:0008361 --OBO_REL:is_a--> GO:0022604
* Changed name of GO:0008871 from "gentamicin 2''-nucleotidyltransferase activity" to "aminoglycoside 2''-nucleotidyltransferase activity"
* Changed definition of GO:0008871 from "Catalysis of the reaction: nucleoside triphosphate + gentamicin = diphosphate + 2''-nucleotidylgentamicin." to "Catalysis of the reaction: nucleoside triphosphate + aminoglycoside = diphosphate + 2''-nucleotidylaminoglycoside."
* Added definition dbxref GOC:cb to GO:0008871
* Deleted synonym "aminoglycoside adenylyltransferase activity" from GO:0008871
* Changed synonym scope of GO:0008871 from "Exact" to "Narrow"
* Changed synonym scope of GO:0008871 from "Exact" to "Narrow"
* Changed synonym scope of GO:0008871 from "Exact" to "Narrow"
* Added synonym "gentamicin 2''-nucleotidyltransferase activity" to GO:0008871
* Added general dbxref EC:2.7.7.46 to synonym gentamicin 2''-nucleotidyltransferase activity of GO:0008871
* Changed synonym scope of GO:0008871 from "Related" to "Narrow"
* Deleted GO:0008871 --OBO_REL:is_a--> GO:0016779
* Copied GO:0008871 to GO:0034068 with type OBO_REL:is_a
* Changed name of GO:0008904 from "hygromycin B kinase activity" to "aminoglycoside 7''-O-phosphotransferase activity"
* Changed definition of GO:0008904 from "Catalysis of the reaction: ATP + hygromycin B = ADP + 7''-O-phosphohygromycin B." to "Catalysis of the reaction: ATP + aminoglycoside = ADP + 7''-O-phosphoaminoglycoside."
* Added definition dbxref GOC:cb to GO:0008904
* Added definition dbxref GOC:mah to GO:0008904
* Changed synonym scope of GO:0008904 from "Exact" to "Narrow"
* Changed synonym scope of GO:0008904 from "Exact" to "Narrow"
* Changed synonym scope of GO:0008904 from "Exact" to "Narrow"
* Added synonym "destomic acid ring 7''-O-phosphotransferase activity" to GO:0008904
* Changed synonym scope of GO:0008904 from "Related" to "Exact"
* Added synonym "hygromycin B kinase activity" to GO:0008904
* Changed synonym scope of GO:0008904 from "Related" to "Narrow"
* Deleted GO:0008904 --OBO_REL:is_a--> GO:0016301
* Copied GO:0008904 to GO:0034071 with type OBO_REL:is_a
* Deleted GO:0008910 --OBO_REL:is_a--> GO:0016773
* Copied GO:0008910 to GO:0034071 with type OBO_REL:is_a
* Changed name of GO:0009012 from "streptomycin 3''-adenylyltransferase activity" to "aminoglycoside 3''-adenylyltransferase activity"
* Changed definition of GO:0009012 from "Catalysis of the reaction: ATP + streptomycin = diphosphate + 3''-adenylylstreptomycin." to "Catalysis of the reaction: ATP + aminoglycoside = diphosphate + 3''-adenylylaminoglycoside."
* Added definition dbxref GOC:cb to GO:0009012
* Deleted synonym "aminoglycoside 3''-adenylyltransferase activity" from GO:0009012
* Changed synonym scope of GO:0009012 from "Exact" to "Narrow"
* Deleted synonym "streptomycin adenylate synthetase activity" from GO:0009012
* Deleted synonym "streptomycin adenyltransferase activity" from GO:0009012
* Deleted synonym "streptomycin adenylylase activity" from GO:0009012
* Deleted synonym "streptomycin adenylyltransferase activity" from GO:0009012
* Deleted synonym "streptomycin-spectinomycin adenylyltransferase activity" from GO:0009012
* Added synonym "streptomycin 3''-adenylyltransferase activity" to GO:0009012
* Changed synonym scope of GO:0009012 from "Related" to "Narrow"
* Deleted GO:0009012 --OBO_REL:is_a--> GO:0016779
* Copied GO:0009012 to GO:0034068 with type OBO_REL:is_a
* Deleted synonym "outer membrane (sensu ProteoBacteria)" from GO:0009279
* Added synonym "outer membrane (sensu Proteobacteria)" to GO:0009279
* Changed synonym scope of GO:0009279 from "Related" to "Exact"
* Added synonym "oxidosqualene:cycloartenol cyclase activity" to GO:0016871
* Added general dbxref PMID:18033581 to synonym oxidosqualene:cycloartenol cyclase activity of GO:0016871
* Changed synonym scope of GO:0016871 from "Related" to "Exact"
* Deleted GO:0016991 --OBO_REL:is_a--> GO:0008080
* Destroyed object GO:0016991
* Changed name of GO:0030074 from "thylakoid (sensu ProteoBacteria)" to "thylakoid (sensu Proteobacteria)"
* Deleted synonym "light-harvesting complex (sensu ProteoBacteria)" from GO:0030077
* Added synonym "light-harvesting complex (sensu Proteobacteria)" to GO:0030077
* Changed synonym scope of GO:0030077 from "Related" to "Exact"
* Changed name of GO:0030090 from "reaction center (sensu ProteoBacteria)" to "reaction center (sensu Proteobacteria)"
* Deleted synonym "reaction centre (sensu ProteoBacteria)" from GO:0030090
* Added synonym "reaction centre (sensu Proteobacteria)" to GO:0030090
* Changed synonym scope of GO:0030090 from "Related" to "Exact"
* Deleted synonym "periplasmic space (sensu ProteoBacteria)" from GO:0030288
* Added synonym "periplasmic space (sensu Proteobacteria)" to GO:0030288
* Changed synonym scope of GO:0030288 from "Related" to "Exact"
* Deleted definition dbxref PMID:9700147 from GO:0030904
* Added definition dbxref PMID:9700157 to GO:0030904
* Deleted definition dbxref PMID:9700147 from GO:0030905
* Added definition dbxref PMID:9700157 to GO:0030905
* Deleted definition dbxref PMID:9700147 from GO:0030906
* Added definition dbxref PMID:9700157 to GO:0030906
* Deleted synonym "intrinsic to outer membrane (sensu ProteoBacteria)" from GO:0031230
* Added synonym "intrinsic to outer membrane (sensu Proteobacteria)" to GO:0031230
* Changed synonym scope of GO:0031230 from "Related" to "Exact"
* Deleted synonym "extrinsic to external side of plasma membrane, in periplasmic space (sensu ProteoBacteria)" from GO:0031236
* Added synonym "extrinsic to external side of plasma membrane, in periplasmic space (sensu Proteobacteria)" to GO:0031236
* Changed synonym scope of GO:0031236 from "Related" to "Exact"
* Deleted synonym "intrinsic to external side of plasma membrane, in periplasmic space (sensu ProteoBacteria)" from GO:0031237
* Added synonym "intrinsic to external side of plasma membrane, in periplasmic space (sensu Proteobacteria)" to GO:0031237
* Changed synonym scope of GO:0031237 from "Related" to "Exact"
* Deleted synonym "extrinsic to outer membrane (sensu ProteoBacteria)" from GO:0031244
* Added synonym "extrinsic to outer membrane (sensu Proteobacteria)" to GO:0031244
* Changed synonym scope of GO:0031244 from "Related" to "Exact"
* Changed name of GO:0031297 from "collapsed replication fork processing" to "replication fork processing"
* Added synonym "collapsed replication fork processing" to GO:0031297
* Changed synonym scope of GO:0031297 from "Related" to "Exact"
* Deleted GO:0031574 --OBO_REL:is_a--> GO:0031573
* Copied GO:0031574 to GO:0000077 with type OBO_REL:is_a
* Changed name of GO:0031582 from "replication fork blocking at rDNA repeats" to "replication fork arrest at rDNA repeats"
* Deleted synonym "replication fork blocking at ribosomal DNA repeats" from GO:0031582
* Added synonym "replication fork arrest at ribosomal DNA repeats" to GO:0031582
* Changed synonym scope of GO:0031582 from "Related" to "Exact"
* Added synonym "replication fork blocking at rDNA repeats" to GO:0031582
* Changed synonym scope of GO:0031582 from "Related" to "Exact"
* Copied GO:0031582 to GO:0043007 with type OBO_REL:is_a
* Deleted GO:0032429 --OBO_REL:is_a--> GO:0051336
* Copied GO:0032429 to GO:0060191 with type OBO_REL:is_a
* Changed definition of GO:0032807 from "A eukaryotically conserved protein complex that contains DNA ligase IV and is involved in DNA repair by non-homologous end joining; in addition to the ligase, the complex also contains XRCC4 or a homolog, e.g. Saccharomyces Lif4p." to "A eukaryotically conserved protein complex that contains DNA ligase IV and is involved in DNA repair by non-homologous end joining; in addition to the ligase, the complex also contains XRCC4 or a homolog, e.g. Saccharomyces Lif1p."
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"
* Added synonym "oxidosqualene:lupeol cyclase activity" to GO:0042299
* Added general dbxref PMID:18033581 to synonym oxidosqualene:lupeol cyclase activity of GO:0042299
* Changed synonym scope of GO:0042299 from "Related" to "Exact"
* Added synonym "oxidosqualene:beta-amyrin cyclase activity" to GO:0042300
* Added general dbxref PMID:18033581 to synonym oxidosqualene:beta-amyrin cyclase activity of GO:0042300
* Changed synonym scope of GO:0042300 from "Related" to "Exact"
* Deleted synonym "thylakoid (sensu ProteoBacteria)" from GO:0042716
* Added synonym "thylakoid (sensu Proteobacteria)" to GO:0042716
* Changed name of GO:0043111 from "replication fork blocking" to "replication fork arrest"
* Deleted synonym "replication fork arrest" from GO:0043111
* Added synonym "replication fork blocking" to GO:0043111
* Changed synonym scope of GO:0043111 from "Related" to "Exact"
* Deleted synonym "cell wall anabolism (sensu ProteoBacteria)" from GO:0043164
* Deleted synonym "cell wall assembly (sensu ProteoBacteria)" from GO:0043164
* Deleted synonym "cell wall biosynthetic process (sensu ProteoBacteria)" from GO:0043164
* Deleted synonym "cell wall formation (sensu ProteoBacteria)" from GO:0043164
* Deleted synonym "cell wall synthesis (sensu ProteoBacteria)" from GO:0043164
* Added synonym "cell wall anabolism (sensu Proteobacteria)" to GO:0043164
* Changed synonym scope of GO:0043164 from "Related" to "Exact"
* Added synonym "cell wall assembly (sensu Proteobacteria)" to GO:0043164
* Changed synonym scope of GO:0043164 from "Related" to "Exact"
* Added synonym "cell wall biosynthetic process (sensu Proteobacteria)" to GO:0043164
* Changed synonym scope of GO:0043164 from "Related" to "Exact"
* Added synonym "cell wall formation (sensu Proteobacteria)" to GO:0043164
* Changed synonym scope of GO:0043164 from "Related" to "Exact"
* Added synonym "cell wall synthesis (sensu Proteobacteria)" to GO:0043164
* Changed synonym scope of GO:0043164 from "Related" to "Exact"
* Changed name of GO:0043165 from "outer membrane biogenesis (sensu ProteoBacteria)" to "outer membrane biogenesis (sensu Proteobacteria)"
* Deleted synonym "integral to external membrane (sensu ProteoBacteria)" from GO:0045203
* Deleted synonym "integral to outer membrane (sensu ProteoBacteria)" from GO:0045203
* Added synonym "integral to external membrane (sensu Proteobacteria)" to GO:0045203
* Changed synonym scope of GO:0045203 from "Related" to "Exact"
* Added synonym "integral to outer membrane (sensu Proteobacteria)" to GO:0045203
* Changed synonym scope of GO:0045203 from "Related" to "Exact"
* Copied GO:0045458 to GO:0043007 with type OBO_REL:is_a
* Changed name of GO:0046353 from "aminoglycoside N3'-acetyltransferase activity" to "aminoglycoside 3-N-acetyltransferase activity"
* added secondary id GO:0016991 to GO:0046353
* Changed definition of GO:0046353 from "Catalysis of the reaction: acetyl-CoA + a 2-deoxystreptamine antibiotic = CoA + N3'-acetyl-2-deoxystreptamine antibiotic." to "Catalysis of the reaction: acetyl-CoA + aminoglycoside = CoA + 3-N-acetylaminoglycoside. This is acetylation of the 3-amino group of the central deoxystreptamine ring."
* Deleted definition dbxref EC:2.3.1.81 from GO:0046353
* Added definition dbxref GOC:cb to GO:0046353
* Added general dbxref EC:2.3.1.60 to GO:0046353
* Added general dbxref MetaCyc:GENTAMICIN-3'-N-ACETYLTRANSFERASE-RXN to GO:0046353
* Changed synonym scope of GO:0046353 from "Exact" to "Related"
* Added synonym "acetyl-CoA:gentamicin-C N3'-acetyltransferase activity" to GO:0046353
* Added general dbxref EC:2.3.1.60 to synonym acetyl-CoA:gentamicin-C N3'-acetyltransferase activity of GO:0046353
* Changed synonym scope of GO:0046353 from "Related" to "Narrow"
* Added synonym "aminoglycoside acetyltransferase AAC(3)-1" to GO:0046353
* Added general dbxref EC:2.3.1.60 to synonym aminoglycoside acetyltransferase AAC(3)-1 of GO:0046353
* Added synonym "aminoglycoside acetyltransferase AAC(3)-I activity" to GO:0046353
* Added general dbxref EC:2.3.1.60 to synonym aminoglycoside acetyltransferase AAC(3)-I activity of GO:0046353
* Added synonym "gentamicin 3'-N-acetyltransferase activity" to GO:0046353
* Changed synonym scope of GO:0046353 from "Related" to "Narrow"
* Added synonym "gentamicin acetyltransferase I activity" to GO:0046353
* Added general dbxref EC:2.3.1.60 to synonym gentamicin acetyltransferase I activity of GO:0046353
* Changed synonym scope of GO:0046353 from "Related" to "Narrow"
* Added synonym "gentamycin 3'-N-acetyltransferase activity" to GO:0046353
* Changed synonym scope of GO:0046353 from "Related" to "Exact"
* Added synonym "gentamycin acetyltransferase I" to GO:0046353
* Added general dbxref EC:2.3.1.60 to synonym gentamycin acetyltransferase I of GO:0046353
* Deleted GO:0046353 --OBO_REL:is_a--> GO:0008080
* Copied GO:0046353 to GO:0034069 with type OBO_REL:is_a
* Deleted GO:0047333 --OBO_REL:is_a--> GO:0016773
* Copied GO:0047333 to GO:0034071 with type OBO_REL:is_a
* Changed name of GO:0047663 from "aminoglycoside N6'-acetyltransferase activity" to "aminoglycoside 6'-N-acetyltransferase activity"
* Changed definition of GO:0047663 from "Catalysis of the reaction: acetyl-CoA + kanamycin-B = CoA + N6'-acetylkanamycin-B." to "Catalysis of the reaction: acetyl-CoA + aminoglycoside = CoA + 6'-N-acetylaminoglycoside. This is acetylation of the 6'-amino group of the 6-deoxy-6-aminoglucose ring."
* Deleted definition dbxref EC:2.3.1.82 from GO:0047663
* Deleted definition dbxref MetaCyc:AMINOGLYCOSIDE-N6'-ACETYLTRANSFERASE-RXN from GO:0047663
* Added definition dbxref GOC:cb to GO:0047663
* Changed synonym scope of GO:0047663 from "Exact" to "Related"
* Changed synonym scope of GO:0047663 from "Exact" to "Narrow"
* Deleted synonym "aminoglycoside 6'-N-acetyltransferase activity" from GO:0047663
* Changed synonym scope of GO:0047663 from "Exact" to "Related"
* Changed synonym scope of GO:0047663 from "Exact" to "Narrow"
* Deleted synonym "kanamycin acetyltransferase activity" from GO:0047663
* Added synonym "aminoglycoside N6'-acetyltransferase activity" to GO:0047663
* Changed synonym scope of GO:0047663 from "Related" to "Exact"
* Deleted GO:0047663 --OBO_REL:is_a--> GO:0008080
* Copied GO:0047663 to GO:0034069 with type OBO_REL:is_a
* Changed name of GO:0047921 from "gentamycin 2'-N-acetyltransferase activity" to "aminoglycoside 2'-N-acetyltransferase activity"
* Changed definition of GO:0047921 from "Catalysis of the reaction: acetyl-CoA + gentamycin C1a = CoA + N2'-acetylgentamycin C1a." to "Catalysis of the reaction: acetyl-CoA + aminoglycoside = CoA + 2'-N-acetylaminoglycoside. This is acetylation of the 2'-amino group of the 6-deoxy-6-aminoglucose ring."
* Deleted definition dbxref EC:2.3.1.59 from GO:0047921
* Deleted definition dbxref MetaCyc:GENTAMICIN-2'-N-ACETYLTRANSFERASE-RXN from GO:0047921
* Added definition dbxref GOC:cb to GO:0047921
* Changed synonym scope of GO:0047921 from "Exact" to "Narrow"
* Changed synonym scope of GO:0047921 from "Exact" to "Narrow"
* Changed synonym scope of GO:0047921 from "Exact" to "Narrow"
* Changed synonym scope of GO:0047921 from "Exact" to "Narrow"
* Added synonym "gentamycin 2'-N-acetyltransferase activity" to GO:0047921
* Changed synonym scope of GO:0047921 from "Related" to "Narrow"
* Deleted GO:0047921 --OBO_REL:is_a--> GO:0008080
* Copied GO:0047921 to GO:0034069 with type OBO_REL:is_a
* Deleted synonym "RubisCO complex (sensu ProteoBacteria)" from GO:0048494
* Added synonym "RubisCO complex (sensu Proteobacteria)" to GO:0048494
* Changed synonym scope of GO:0048494 from "Related" to "Exact"
* Deleted GO:0050299 --OBO_REL:is_a--> GO:0016301
* Copied GO:0050299 to GO:0034071 with type OBO_REL:is_a
* Changed name of GO:0050300 from "streptomycin 6-kinase activity" to "aminoglycoside 6-kinase activity"
* Changed synonym scope of GO:0050300 from "Exact" to "Narrow"
* Changed synonym scope of GO:0050300 from "Exact" to "Narrow"
* Changed synonym scope of GO:0050300 from "Exact" to "Narrow"
* Changed synonym scope of GO:0050300 from "Exact" to "Narrow"
* Changed synonym scope of GO:0050300 from "Exact" to "Narrow"
* Changed synonym scope of GO:0050300 from "Exact" to "Narrow"
* Changed synonym scope of GO:0050300 from "Exact" to "Narrow"
* Added synonym "streptomycin 6-kinase activity" to GO:0050300
* Changed synonym scope of GO:0050300 from "Related" to "Narrow"
* Deleted GO:0050300 --OBO_REL:is_a--> GO:0016301
* Copied GO:0050300 to GO:0034071 with type OBO_REL:is_a
* Deleted GO:0051004 --OBO_REL:is_a--> GO:0051336
* Copied GO:0051004 to GO:0060191 with type OBO_REL:is_a
* Added synonym "squalene:hopene cyclase activity" to GO:0051007
* Added general dbxref PMID:18033581 to synonym squalene:hopene cyclase activity of GO:0051007
* Deleted GO:0051007 --OBO_REL:is_a--> GO:0009975
* Copied GO:0051007 to GO:0034072 with type OBO_REL:is_a
* Changed definition of GO:0065005 from "The aggregation, arrangement and bonding together of proteins and lipids to form a protein-DNA complex." to "The aggregation, arrangement and bonding together of proteins and lipids to form a protein-lipid complex."
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