[go-diff] GO update 01/08/2008

Tue Jan 8 21:30:45 PST 2008

OBODIFF of gene_ontology_edit.obo version 5.636 by 5.638

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034077
* Created object of type obo:TERM with id GO:0034078
* Created object of type obo:TERM with id GO:0034079
* Created object of type obo:TERM with id GO:0034080
* Created object of type obo:TERM with id GO:0034081
* Created object of type obo:TERM with id GO:0034082
* Created object of type obo:TERM with id GO:0034083
* Created object of type obo:TERM with id GO:0034084
* Populated new object GO:0034077 (macro)
  * Changed name of GO:0034077 from "<new term>" to "butanediol metabolic process"
  * Set definition of GO:0034077 to "The chemical reactions and pathways involving butanediol; the biologically relevant isomer is 2,3-butanediol, CH3CH(OH)CH(OH)CH3."
  * Added definition dbxref ISBN:0911910123 to GO:0034077
  * Added definition dbxref MetaCyc:BUTANEDIOL to GO:0034077
  * Added definition dbxref MetaCyc:P125-PWY to GO:0034077
  * Added GO:0034077 to category gosubset_prok
  * Added synonym "butanediol metabolism" to GO:0034077
  * Changed synonym scope of GO:0034077 from "Related" to "Exact"
  * Added synonym "butylene glycol metabolic process" to GO:0034077
  * Changed synonym scope of GO:0034077 from "Related" to "Exact"
  * Added synonym "butylene glycol metabolism" to GO:0034077
  * Changed synonym scope of GO:0034077 from "Related" to "Exact"
  * Copied GO:0034077 to GO:0019751 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034077
* Populated new object GO:0034078 (macro)
  * Changed name of GO:0034078 from "<new term>" to "butanediol catabolic process"
  * Set definition of GO:0034078 to "The chemical reactions and pathways resulting in the breakdown of butanediol; the biologically relevant isomer is 2,3-butanediol, CH3CH(OH)CH(OH)CH3."
  * Added definition dbxref GOC:mah to GO:0034078
  * Added definition dbxref ISBN:0911910123 to GO:0034078
  * Added definition dbxref MetaCyc:125-PWY to GO:0034078
  * Added definition dbxref MetaCyc:BUTANEDIOL to GO:0034078
  * Added GO:0034078 to category gosubset_prok
  * Added synonym "butanediol breakdown" to GO:0034078
  * Changed synonym scope of GO:0034078 from "Related" to "Exact"
  * Added synonym "butanediol catabolism" to GO:0034078
  * Changed synonym scope of GO:0034078 from "Related" to "Exact"
  * Added synonym "butanediol degradation" to GO:0034078
  * Changed synonym scope of GO:0034078 from "Related" to "Exact"
  * Added synonym "butanediol utilization" to GO:0034078
  * Added synonym "butylene glycol catabolic process" to GO:0034078
  * Changed synonym scope of GO:0034078 from "Related" to "Exact"
  * Added synonym "butylene glycol catabolism" to GO:0034078
  * Changed synonym scope of GO:0034078 from "Related" to "Exact"
  * Copied GO:0034078 to GO:0034077 with type OBO_REL:is_a
  * Copied GO:0034078 to GO:0046174 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034078
* Populated new object GO:0034079 (macro)
  * Changed name of GO:0034079 from "<new term>" to "butanediol biosynthetic process"
  * Set definition of GO:0034079 to "The chemical reactions and pathways resulting in the formation of butanediol; the biologically relevant isomer is 2,3-butanediol, CH3CH(OH)CH(OH)CH3."
  * Added definition dbxref GOC:mah to GO:0034079
  * Added definition dbxref ISBN:0911910123 to GO:0034079
  * Added definition dbxref MetaCyc:125-PWY to GO:0034079
  * Added definition dbxref MetaCyc:BUTANEDIOL to GO:0034079
  * Added general dbxref MetaCyc:P125-PWY to GO:0034079
  * Added GO:0034079 to category gosubset_prok
  * Added synonym "butanediol anabolism" to GO:0034079
  * Changed synonym scope of GO:0034079 from "Related" to "Exact"
  * Added synonym "butanediol biosynthesis" to GO:0034079
  * Changed synonym scope of GO:0034079 from "Related" to "Exact"
  * Added synonym "butanediol formation" to GO:0034079
  * Changed synonym scope of GO:0034079 from "Related" to "Exact"
  * Added synonym "butanediol synthesis" to GO:0034079
  * Changed synonym scope of GO:0034079 from "Related" to "Exact"
  * Added synonym "butylene glycol biosynthesis" to GO:0034079
  * Changed synonym scope of GO:0034079 from "Related" to "Exact"
  * Added synonym "butylene glycol biosynthetic process" to GO:0034079
  * Changed synonym scope of GO:0034079 from "Related" to "Exact"
  * Copied GO:0034079 to GO:0034077 with type OBO_REL:is_a
  * Copied GO:0034079 to GO:0046173 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034079
* Populated new object GO:0034080 (macro)
  * Changed name of GO:0034080 from "<new term>" to "DNA replication-independent nucleosome assembly at centromere"
  * Set definition of GO:0034080 to "The formation of nucleosomes containing the histone H3 variant CENP-A to form centromeric chromatin; occurs outside the context of DNA replication."
  * Added definition dbxref GOC:mah to GO:0034080
  * Added definition dbxref PMID:18158900 to GO:0034080
  * Added synonym "centromeric DNA replication-independent nucleosome assembly" to GO:0034080
  * Changed synonym scope of GO:0034080 from "Related" to "Exact"
  * Copied GO:0034080 to GO:0031055 with type OBO_REL:is_a
  * Copied GO:0034080 to GO:0006336 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034080
* Populated new object GO:0034081 (macro)
  * Changed name of GO:0034081 from "<new term>" to "polyketide synthase complex"
  * Set definition of GO:0034081 to "A protein complex that carries out enzymatic reactions involved in the biosynthesis of polyketides, any of a diverse group of natural products synthesized via linear poly-beta-ketones."
  * Added definition dbxref GOC:mah to GO:0034081
  * Added definition dbxref PMID:12636085 to GO:0034081
  * Added synonym "PKS" to GO:0034081
  * Added synonym "PKS complex" to GO:0034081
  * Changed synonym scope of GO:0034081 from "Related" to "Exact"
  * Copied GO:0034081 to GO:0043234 with type OBO_REL:is_a
  * Copied GO:0034081 to GO:0044444 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034081
* Populated new object GO:0034082 (macro)
  * Changed name of GO:0034082 from "<new term>" to "type II polyketide synthase complex"
  * Set definition of GO:0034082 to "A polyketide synthase complex that consists of several different polypeptide chains, each of which catalyzes a single reaction."
  * Added definition dbxref GOC:cb to GO:0034082
  * Added definition dbxref GOC:mah to GO:0034082
  * Added definition dbxref PMID:12636085 to GO:0034082
  * Added synonym "type II PKS" to GO:0034082
  * Changed synonym scope of GO:0034082 from "Related" to "Exact"
  * Added synonym "type II PKS complex" to GO:0034082
  * Changed synonym scope of GO:0034082 from "Related" to "Exact"
  * Added synonym "type II polyketide synthase" to GO:0034082
  * Changed synonym scope of GO:0034082 from "Related" to "Exact"
  * Copied GO:0034082 to GO:0034081 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034082
* Populated new object GO:0034083 (macro)
  * Changed name of GO:0034083 from "<new term>" to "type III polyketide synthase complex"
  * Set definition of GO:0034083 to "A polyketide synthase complex that consists of two identical ketosynthase polypeptides."
  * Added definition dbxref GOC:cb to GO:0034083
  * Added definition dbxref PMID:12636085 to GO:0034083
  * Added synonym "type III PKS" to GO:0034083
  * Changed synonym scope of GO:0034083 from "Related" to "Exact"
  * Added synonym "type III PKS complex" to GO:0034083
  * Changed synonym scope of GO:0034083 from "Related" to "Exact"
  * Added synonym "type III polyketide synthase" to GO:0034083
  * Changed synonym scope of GO:0034083 from "Related" to "Exact"
  * Copied GO:0034083 to GO:0034081 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034083
* Populated new object GO:0034084 (macro)
  * Changed name of GO:0034084 from "<new term>" to "steryl deacetylase activity"
  * Set definition of GO:0034084 to "Catalysis of the hydrolysis of an acetyl group or groups from an acetylated sterol."
  * Added definition dbxref GOC:rb to GO:0034084
  * Added definition dbxref PMID:18034159 to GO:0034084
  * Added synonym "sterol deacetylase activity" to GO:0034084
  * Changed synonym scope of GO:0034084 from "Related" to "Exact"
  * Copied GO:0034084 to GO:0019213 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034084
* Added synonym "FAS complex" to GO:0005835
* Changed synonym scope of GO:0005835 from "Related" to "Exact"
* Copied GO:0019650 to GO:0034077 with type OBO_REL:is_a
* Deleted synonym "neocortex development" from GO:0021903
* Added synonym "neocortex development" to GO:0021987
* Added general dbxref GOC:dph to synonym neocortex development of GO:0021987
* Changed synonym scope of GO:0030315 from "Exact" to "Related"
* Added synonym "cytosolic FAS complex" to GO:0031373
* Changed synonym scope of GO:0031373 from "Related" to "Exact"
* Added synonym "cytosolic type I FAS complex" to GO:0031374
* Changed synonym scope of GO:0031374 from "Related" to "Exact"
* Added synonym "type II FAS" to GO:0031375
* Changed synonym scope of GO:0031375 from "Related" to "Exact"
* Added synonym "type II FAS complex" to GO:0031375
* Changed synonym scope of GO:0031375 from "Related" to "Exact"
* Added synonym "type II fatty acid synthase" to GO:0031375
* Changed synonym scope of GO:0031375 from "Related" to "Exact"
* Added synonym "cytosolic type II FAS complex" to GO:0031376
* Changed synonym scope of GO:0031376 from "Related" to "Exact"
* Added synonym "mitochondrial type II FAS complex" to GO:0031377
* Changed synonym scope of GO:0031377 from "Related" to "Exact"
* Added synonym "plastid type II FAS complex" to GO:0031378
* Changed synonym scope of GO:0031378 from "Related" to "Exact"
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"