[go-diff] GO update 01/16/2008

Wed Jan 16 21:30:45 PST 2008

OBODIFF of gene_ontology_edit.obo version 5.651 by 5.652

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034192
* Created object of type obo:TERM with id GO:0034193
* Created object of type obo:TERM with id GO:0034194
* Created object of type obo:TERM with id GO:0034195
* Created object of type obo:TERM with id GO:0034196
* Created object of type obo:TERM with id GO:0034197
* Created object of type obo:TERM with id GO:0034198
* Created object of type obo:TERM with id GO:0034199
* Created object of type obo:TERM with id GO:0034200
* Created object of type obo:TERM with id GO:0034201
* Populated new object GO:0034192 (macro)
  * Changed name of GO:0034192 from "<new term>" to "D-galactonate metabolic process"
  * Set definition of GO:0034192 to "The chemical reactions and pathways involving D-galactonate, the anion of D-galactonic acid."
  * Added definition dbxref GOC:mah to GO:0034192
  * Added GO:0034192 to category gosubset_prok
  * Added synonym "D-galactonate metabolism" to GO:0034192
  * Changed synonym scope of GO:0034192 from "Related" to "Exact"
  * Copied GO:0034192 to GO:0019583 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034192
* Populated new object GO:0034193 (macro)
  * Changed name of GO:0034193 from "<new term>" to "L-galactonate metabolic process"
  * Set definition of GO:0034193 to "The chemical reactions and pathways involving L-galactonate, the anion of L-galactonic acid."
  * Added definition dbxref GOC:mah to GO:0034193
  * Added GO:0034193 to category gosubset_prok
  * Added synonym "L-galactonate metabolism" to GO:0034193
  * Changed synonym scope of GO:0034193 from "Related" to "Exact"
  * Copied GO:0034193 to GO:0019583 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034193
* Populated new object GO:0034194 (macro)
  * Changed name of GO:0034194 from "<new term>" to "D-galactonate catabolic process"
  * Set definition of GO:0034194 to "The chemical reactions and pathways resulting in the breakdown of D-galactonate, the anion of D-galactonic acid."
  * Added definition dbxref GOC:ai to GO:0034194
  * Added definition dbxref GOC:mah to GO:0034194
  * Added general dbxref MetaCyc:GALACTCAT-PWY to GO:0034194
  * Added GO:0034194 to category gosubset_prok
  * Added synonym "D-galactonate breakdown" to GO:0034194
  * Changed synonym scope of GO:0034194 from "Related" to "Exact"
  * Added synonym "D-galactonate catabolism" to GO:0034194
  * Changed synonym scope of GO:0034194 from "Related" to "Exact"
  * Added synonym "D-galactonate degradation" to GO:0034194
  * Changed synonym scope of GO:0034194 from "Related" to "Exact"
  * Copied GO:0034194 to GO:0019584 with type OBO_REL:is_a
  * Copied GO:0034194 to GO:0034192 with type OBO_REL:is_a
  * Copied GO:0034194 to GO:0046395 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034194
* Populated new object GO:0034195 (macro)
  * Changed name of GO:0034195 from "<new term>" to "L-galactonate catabolic process"
  * Set definition of GO:0034195 to "The chemical reactions and pathways resulting in the breakdown of L-galactonate, the anion of L-galactonic acid."
  * Added definition dbxref GOC:ai to GO:0034195
  * Added definition dbxref GOC:mah to GO:0034195
  * Added general dbxref MetaCyc:GALACTCAT-PWY to GO:0034195
  * Added GO:0034195 to category gosubset_prok
  * Added synonym "L-galactonate breakdown" to GO:0034195
  * Changed synonym scope of GO:0034195 from "Related" to "Exact"
  * Added synonym "L-galactonate catabolism" to GO:0034195
  * Changed synonym scope of GO:0034195 from "Related" to "Exact"
  * Added synonym "L-galactonate degradation" to GO:0034195
  * Changed synonym scope of GO:0034195 from "Related" to "Exact"
  * Copied GO:0034195 to GO:0046395 with type OBO_REL:is_a
  * Copied GO:0034195 to GO:0034193 with type OBO_REL:is_a
  * Copied GO:0034195 to GO:0019584 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034195
* Populated new object GO:0034196 (macro)
  * Changed name of GO:0034196 from "<new term>" to "acylglycerol transport"
  * Set definition of GO:0034196 to "The directed movement of an acylglycerol into, out of, within or between cells. An acylglycerol is any mono-, di- or triester of glycerol with (one or more) fatty acids."
  * Added definition dbxref GOC:rl to GO:0034196
  * Added synonym "glyceride transport" to GO:0034196
  * Changed synonym scope of GO:0034196 from "Related" to "Exact"
  * Copied GO:0034196 to GO:0006869 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034196
* Populated new object GO:0034197 (macro)
  * Changed name of GO:0034197 from "<new term>" to "triacylglycerol transport"
  * Set definition of GO:0034197 to "The directed movement of triacylglycerol into, out of, within or between cells. Triacylglycerols are important components of plant oils, animal fats and animal plasma lipoproteins."
  * Added definition dbxref GOC:rl to GO:0034197
  * Added synonym "triglyceride transport" to GO:0034197
  * Changed synonym scope of GO:0034197 from "Related" to "Exact"
  * Copied GO:0034197 to GO:0034196 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034197
* Populated new object GO:0034198 (macro)
  * Changed name of GO:0034198 from "<new term>" to "cellular response to amino acid starvation"
  * Set definition of GO:0034198 to "A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of amino acids."
  * Added definition dbxref GOC:ecd to GO:0034198
  * Copied GO:0034198 to GO:0009267 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034198
* Populated new object GO:0034199 (macro)
  * Changed name of GO:0034199 from "<new term>" to "activation of protein kinase A"
  * Set definition of GO:0034199 to "Any process that initiates the activity of the inactive enzyme protein kinase A."
  * Added definition dbxref GOC:pd to GO:0034199
  * Added synonym "protein kinase A activation" to GO:0034199
  * Changed synonym scope of GO:0034199 from "Related" to "Exact"
  * Copied GO:0034199 to GO:0032147 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034199
* Populated new object GO:0034200 (macro)
  * Changed name of GO:0034200 from "<new term>" to "D-heptose 1,7-bisphosphate phosphatase"
  * Set definition of GO:0034200 to "Catalysis of the reaction: D-beta-D-heptose 1,7-bisphosphate + H2O = D-beta-D-heptose 1-phosphate + phosphate."
  * Added definition dbxref MetaCyc:RXN0-4361 to GO:0034200
  * Added definition dbxref PMID:11279237 to GO:0034200
  * Added general dbxref MetaCyc:RXN0-4361 to GO:0034200
  * Copied GO:0034200 to GO:0016791 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034200
* Populated new object GO:0034201 (macro)
  * Changed name of GO:0034201 from "<new term>" to "response to oleate"
  * Set definition of GO:0034201 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as
a result of a oleate stimulus."
  * Added definition dbxref ChEBI:30823 to GO:0034201
  * Added definition dbxref GOC:rb to GO:0034201
  * Added definition dbxref PMID:17551510 to GO:0034201
  * Added synonym "response to oleic acid" to GO:0034201
  * Changed synonym scope of GO:0034201 from "Related" to "Exact"
  * Copied GO:0034201 to GO:0033993 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034201
* Deleted GO:0005247 --OBO_REL:is_a--> GO:0022844
* Copied GO:0005247 to GO:0008308 with type OBO_REL:is_a
* Changed name of GO:0008308 from "voltage-gated ion-selective channel activity" to "voltage-gated anion channel activity"
* added secondary id GO:0022844 to GO:0008308
* Set definition of GO:0008308 to "Catalysis of the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion."
* Added definition dbxref GOC:mtg_transport to GO:0008308
* Added definition dbxref ISBN:0815340729 to GO:0008308
* Changed synonym scope of GO:0008308 from "Exact" to "Related"
* Added synonym "voltage-gated ion-selective channel activity" to GO:0008308
* Copied GO:0008308 to GO:0005244 with type OBO_REL:is_a
* Changed name of GO:0008968 from "phosphoheptose isomerase activity" to "D-sedoheptulose 7-phosphate isomerase activity"
* Changed definition of GO:0008968 from "Catalysis of the conversion of sedoheptulose 7-phosphate to D-glycero-D-mannoheptose 7-phosphate." to "Catalysis of the reaction: D-sedoheptulose-7-phosphate = D-alpha,beta-D-heptose 7-phosphate."
* Added definition dbxref MetaCyc:RXN0-4301 to GO:0008968
* Added definition dbxref PMID:11279237 to GO:0008968
* Added general dbxref MetaCyc:RXN0-4301 to GO:0008968
* Added synonym "phosphoheptose isomerase activity" to GO:0008968
* Changed synonym scope of GO:0008968 from "Related" to "Exact"
* Deleted GO:0008968 --OBO_REL:is_a--> GO:0016853
* Copied GO:0008968 to GO:0016868 with type OBO_REL:is_a
* Deleted GO:0022844 --OBO_REL:is_a--> GO:0005244
* Deleted GO:0005247 --OBO_REL:is_a--> GO:0022844
* Destroyed object GO:0022844
* Deleted general dbxref Reactome:9823 from GO:0033171
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"