[go-diff] GO update 01/17/2008

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_edit.obo version 5.652 by 5.654

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034202
* Created object of type obo:TERM with id GO:0034203
* Created object of type obo:TERM with id GO:0034204
* Created object of type obo:TERM with id GO:0034205
* Created object of type obo:TERM with id GO:0034206
* Populated new object GO:0034202 (macro)
  * Changed name of GO:0034202 from "<new term>" to "glycolipid-translocating activity"
  * Set definition of GO:0034202 to "Catalysis of the movement of glycolipids from one membrane face to the other ('flippase' activity)."
  * Added definition dbxref GOC:krc to GO:0034202
  * Added definition dbxref PMID:11807558 to GO:0034202
  * Added synonym "flippase activity" to GO:0034202
  * Changed synonym scope of GO:0034202 from "Related" to "Broad"
  * Copied GO:0034202 to GO:0017089 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034202
* Populated new object GO:0034203 (macro)
  * Changed name of GO:0034203 from "<new term>" to "glycolipid translocation"
  * Set definition of GO:0034203 to "The translocation, or flipping, of glycolipid molecules from one monolayer of a membrane bilayer to the opposite monolayer."
  * Added definition dbxref GOC:go_curators to GO:0034203
  * Added definition dbxref PMID:11807558 to GO:0034203
  * Added GO:0034203 to category gosubset_prok
  * Added synonym "flippase" to GO:0034203
  * Added synonym "scramblase" to GO:0034203
  * Copied GO:0034203 to GO:0034204 with type OBO_REL:is_a
  * Copied GO:0034203 to GO:0016044 with type OBO_REL:is_a
  * Copied GO:0034203 to GO:0046836 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034203
* Populated new object GO:0034204 (macro)
  * Changed name of GO:0034204 from "<new term>" to "lipid translocation"
  * Set definition of GO:0034204 to "The translocation, or flipping, of lipid molecules from one monolayer of a membrane bilayer to the opposite monolayer."
  * Added definition dbxref GOC:mah to GO:0034204
  * Copied GO:0034204 to GO:0006869 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034204
* Populated new object GO:0034205 (macro)
  * Changed name of GO:0034205 from "<new term>" to "beta-amyloid formation"
  * Added comment "Note that this term does not fall under the general GO definition for biosynthetic processes, which is 'The chemical reactions and pathways resulting in the formation of... ', because beta-amyloid can only be formed by the proteolysis of a larger molecule (see term definition). The word 'formation' is therefore used in place of biosynthesis."
  * Set definition of GO:0034205 to "The generation of beta-amyloid by cleavage of the amyloid precursor protein (APP)."
  * Added definition dbxref GOC:mah to GO:0034205
  * Copied GO:0034205 to GO:0042987 with type OBO_REL:is_a
  * Copied GO:0034205 to GO:0050435 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034205
* Populated new object GO:0034206 (macro)
  * Changed name of GO:0034206 from "<new term>" to "enhanceosome"
  * Set definition of GO:0034206 to "A protein-DNA complex formed by the association of a distinct set of general and specific transcription factors with a region of enhancer DNA. The cooperative assembly of an enhanceosome confers specificity of transcriptional regulation."
  * Added definition dbxref PMID:11250145 to GO:0034206
  * Added definition dbxref PMID:17574024 to GO:0034206
  * Copied GO:0034206 to GO:0032993 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034206
* Deleted GO:0006323 --OBO_REL:is_a--> GO:0006259
* Copied GO:0006323 to GO:0016043 with type OBO_REL:is_a
* Deleted GO:0006325 --OBO_REL:is_a--> GO:0006323
* Copied GO:0030261 to GO:0006323 with type OBO_REL:is_a
* Copied GO:0031497 to GO:0006323 with type part_of
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"
* Copied GO:0035092 to GO:0006323 with type OBO_REL:is_a
* Copied GO:0045332 to GO:0034204 with type OBO_REL:is_a
* Changed name of GO:0050910 from "detection of mechanical stimulus during sensory perception of sound" to "detection of mechanical stimulus involved in sensory perception of sound"
* Changed definition of GO:0050910 from "The series of events during the perception of sound in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. Sound is picked up in the form of vibrations." to "The series of events involved in the perception of sound in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. Sound is picked up in the form of vibrations."
* Changed name of GO:0050966 from "detection of mechanical stimulus during sensory perception of pain" to "detection of mechanical stimulus involved in sensory perception of pain"
* Changed definition of GO:0050966 from "The series of events during the perception of pain in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal." to "The series of events involved in the perception of pain in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal."
* Changed name of GO:0050971 from "detection of mechanical stimulus during magnetoreception" to "detection of mechanical stimulus involved in magnetoreception"
* Changed definition of GO:0050971 from "The series of events during magnetoception in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. The stimulus is in the form of torque on particles such as magnetite which respond to a magnetic field." to "The series of events involved in magnetoception in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. The stimulus is in the form of torque on particles such as magnetite which respond to a magnetic field."
* Changed name of GO:0050972 from "detection of mechanical stimulus during echolocation" to "detection of mechanical stimulus involved in echolocation"
* Changed definition of GO:0050972 from "The series of events during echolocation in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. The stimulus is in the form of a reflected sound wave (an echo), which the organism uses to determine the distance to the object that reflected the sound wave." to "The series of events involved in echolocation in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. The stimulus is in the form of a reflected sound wave (an echo), which the organism uses to determine the distance to the object that reflected the sound wave."
* Changed name of GO:0050973 from "detection of mechanical stimulus during equilibrioception" to "detection of mechanical stimulus involved in equilibrioception"
* Changed definition of GO:0050973 from "The series of events during equilibrioception in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. During equilibrioception, mechanical stimuli may be in the form of input from pressure receptors or from the labyrinth system of the inner ears." to "The series of events involved in equilibrioception in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. During equilibrioception, mechanical stimuli may be in the form of input from pressure receptors or from the labyrinth system of the inner ears."
* Changed name of GO:0050974 from "detection of mechanical stimulus during sensory perception" to "detection of mechanical stimulus involved in sensory perception"
* Changed name of GO:0050976 from "detection of mechanical stimulus during sensory perception of touch" to "detection of mechanical stimulus involved in sensory perception of touch"
* Changed definition of GO:0050976 from "The series of events during the perception of touch in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal." to "The series of events involved in the perception of touch in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal."
* Changed name of GO:0065009 from "regulation of a molecular function" to "regulation of molecular function"
* Added synonym "regulation of a molecular function" to GO:0065009
* Changed synonym scope of GO:0065009 from "Related" to "Exact"