[go-diff] GO update 01/28/2008

Mon Jan 28 21:30:44 PST 2008

OBODIFF of gene_ontology_edit.obo version 5.668 by 5.671

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034213
* Created object of type obo:TERM with id GO:0034214
* Created object of type obo:TERM with id GO:0034215
* Created object of type obo:TERM with id GO:0034216
* Created object of type obo:TERM with id GO:0034217
* Created object of type obo:TERM with id GO:0034218
* Populated new object GO:0034213 (macro)
  * Changed name of GO:0034213 from "<new term>" to "quinolinate catabolic process"
  * Set definition of GO:0034213 to "The chemical reactions and pathways resulting in the breakdown of quinolinate, the anion of quinolinic acid, also known as 2,3-pyridinedicarboxylic acid."
  * Added definition dbxref GOC:mah to GO:0034213
  * Added synonym "quinolinate breakdown" to GO:0034213
  * Changed synonym scope of GO:0034213 from "Related" to "Exact"
  * Added synonym "quinolinate catabolism" to GO:0034213
  * Changed synonym scope of GO:0034213 from "Related" to "Exact"
  * Added synonym "quinolinate degradation" to GO:0034213
  * Changed synonym scope of GO:0034213 from "Related" to "Exact"
  * Copied GO:0034213 to GO:0046874 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034213
* Populated new object GO:0034214 (macro)
  * Changed name of GO:0034214 from "<new term>" to "protein hexamerization"
  * Set definition of GO:0034214 to "The formation of a protein hexamer, a macromolecular structure consisting of six noncovalently associated identical or nonidentical subunits."
  * Added definition dbxref GOC:ecd to GO:0034214
  * Added GO:0034214 to category gosubset_prok
  * Added synonym "protein hexamer assembly" to GO:0034214
  * Changed synonym scope of GO:0034214 from "Related" to "Exact"
  * Added synonym "protein hexamer biosynthesis" to GO:0034214
  * Changed synonym scope of GO:0034214 from "Related" to "Exact"
  * Added synonym "protein hexamer biosynthetic process" to GO:0034214
  * Changed synonym scope of GO:0034214 from "Related" to "Exact"
  * Added synonym "protein hexamer formation" to GO:0034214
  * Changed synonym scope of GO:0034214 from "Related" to "Exact"
  * Copied GO:0034214 to GO:0051259 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034214
* Populated new object GO:0034215 (macro)
  * Changed name of GO:0034215 from "<new term>" to "thiamin:hydrogen symporter activity"
  * Set definition of GO:0034215 to "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: thiamin(out) + H+(out) = thiamin(in) + H+(in)."
  * Added definition dbxref GOC:mah to GO:0034215
  * Added synonym "thiamin:proton symporter activity" to GO:0034215
  * Changed synonym scope of GO:0034215 from "Related" to "Exact"
  * Added synonym "thiamine:hydrogen symporter activity" to GO:0034215
  * Changed synonym scope of GO:0034215 from "Related" to "Exact"
  * Added synonym "thiamine:proton symporter activity" to GO:0034215
  * Changed synonym scope of GO:0034215 from "Related" to "Exact"
  * Copied GO:0034215 to GO:0015295 with type OBO_REL:is_a
  * Copied GO:0034215 to GO:0015403 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034215
* Populated new object GO:0034216 (macro)
  * Changed name of GO:0034216 from "<new term>" to "high affinity thiamin:hydrogen symporter activity"
  * Set definition of GO:0034216 to "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: thiamin(out) + H+(out) = thiamin(in) + H+(in). In high affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations."
  * Added definition dbxref GOC:mah to GO:0034216
  * Added synonym "thiamin:proton symporter activity" to GO:0034216
  * Changed synonym scope of GO:0034216 from "Related" to "Exact"
  * Added synonym "thiamine:hydrogen symporter activity" to GO:0034216
  * Changed synonym scope of GO:0034216 from "Related" to "Exact"
  * Added synonym "thiamine:proton symporter activity" to GO:0034216
  * Changed synonym scope of GO:0034216 from "Related" to "Exact"
  * Copied GO:0034216 to GO:0034215 with type OBO_REL:is_a
  * Copied GO:0034216 to GO:0015403 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034216
* Populated new object GO:0034217 (macro)
  * Changed name of GO:0034217 from "<new term>" to "spore wall chitin biosynthetic process"
  * Set definition of GO:0034217 to "The chemical reactions and pathways resulting in the formation of spore wall chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues, found in the walls of fungal-type spores."
  * Added definition dbxref GOC:mah to GO:0034217
  * Added synonym "spore wall chitin anabolism" to GO:0034217
  * Changed synonym scope of GO:0034217 from "Related" to "Exact"
  * Added synonym "spore wall chitin biosynthesis" to GO:0034217
  * Changed synonym scope of GO:0034217 from "Related" to "Exact"
  * Added synonym "spore wall chitin formation" to GO:0034217
  * Changed synonym scope of GO:0034217 from "Related" to "Exact"
  * Added synonym "v wall chitin synthesis" to GO:0034217
  * Changed synonym scope of GO:0034217 from "Related" to "Exact"
  * Copied GO:0034217 to GO:0034218 with type OBO_REL:is_a
  * Copied GO:0034217 to GO:0006038 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034217
* Populated new object GO:0034218 (macro)
  * Changed name of GO:0034218 from "<new term>" to "spore wall chitin metabolic process"
  * Set definition of GO:0034218 to "The chemical reactions and pathways involving spore wall chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues, found in the walls of fungal-type spores."
  * Added definition dbxref GOC:mah to GO:0034218
  * Added synonym "spore wall chitin metabolism" to GO:0034218
  * Changed synonym scope of GO:0034218 from "Related" to "Exact"
  * Copied GO:0034218 to GO:0006037 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034218
* Changed name of GO:0006358 from "regulation of global transcription from RNA polymerase II promoter" to "regulation of transcription from RNA polymerase II promoter, global"
* Changed definition of GO:0006450 from "Any process that modulates the frequency, rate or extent of activities to ensure translational fidelity." to "Any process that modulates the ability of the translational apparatus to interpret the genetic code."
* Deleted definition dbxref GOC:go_curators from GO:0006450
* Added definition dbxref GOC:dph to GO:0006450
* Added definition dbxref GOC:tb to GO:0006450
* Copied GO:0006450 to GO:0065008 with type OBO_REL:is_a
* Deleted GO:0006753 --OBO_REL:is_a--> GO:0006752
* Copied GO:0006753 to GO:0055086 with type OBO_REL:is_a
* Changed name of GO:0006990 from "positive regulation of transcription of target genes involved in unfolded protein response" to "positive regulation of gene-specific transcription involved in unfolded protein response"
* Added definition dbxref GOC:dph to GO:0006990
* Added synonym "positive regulation of transcription of target genes involved in unfolded protein response" to GO:0006990
* Added general dbxref GOC:tb to synonym positive regulation of transcription of target genes involved in unfolded protein response of GO:0006990
* Added general dbxref GOC:dph to synonym positive regulation of transcription of target genes involved in unfolded protein response of GO:0006990
* Changed synonym scope of GO:0006990 from "Related" to "Exact"
* Changed definition of GO:0009117 from "The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates)." to "The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates)."
* Deleted GO:0009117 --OBO_REL:is_a--> GO:0055086
* Copied GO:0009117 to GO:0006753 with type OBO_REL:is_a
* Copied GO:0015403 to GO:0015234 with type OBO_REL:is_a
* Changed name of GO:0032057 from "negative regulation of translation initiation in response to stress" to "negative regulation of translational initiation in response to stress"
* Changed name of GO:0032058 from "positive regulation of translation initiation in response to stress" to "positive regulation of translational initiation in response to stress"
* Changed name of GO:0032063 from "negative regulation of translation initiation in response to osmotic stress" to "negative regulation of translational initiation in response to osmotic stress"
* Changed name of GO:0032064 from "positive regulation of translation initiation in response to osmotic stress" to "positive regulation of translational initiation in response to osmotic stress"
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"
* Changed name of GO:0043558 from "regulation of translation initiation in response to stress" to "regulation of translational initiation in response to stress"
* Changed name of GO:0043561 from "regulation of translation initiation in response to osmotic stress" to "regulation of translational initiation in response to osmotic stress"
* Added definition dbxref GOC:dph to GO:0043561
* Added definition dbxref GOC:tb to GO:0043561
* Added synonym "flippase" to GO:0045332
* Changed name of GO:0045816 from "negative regulation of global transcription from RNA polymerase II promoter" to "negative regulation of transcription from RNA polymerase II promoter, global"
* Changed name of GO:0045817 from "positive regulation of global transcription from RNA polymerase II promoter" to "positive regulation of transcription from RNA polymerase II promoter, global"
* Changed definition of GO:0045902 from "Any process that stops, prevents or reduces the frequency, rate or extent of activities to ensure translational fidelity." to "Any process that decreases the ability of the translational apparatus to interpret the genetic code."
* Deleted definition dbxref GOC:go_curators from GO:0045902
* Added definition dbxref GOC:dph to GO:0045902
* Added definition dbxref GOC:tb to GO:0045902
* Changed definition of GO:0045903 from "Any process that activates or increases the frequency, rate or extent of activities to ensure translational fidelity." to "Any process that increases the ability of the translational apparatus to interpret the genetic code."
* Deleted definition dbxref GOC:go_curators from GO:0045903
* Added definition dbxref GOC:dph to GO:0045903
* Added definition dbxref GOC:tb to GO:0045903
* Changed name of GO:0051278 from "chitin- and beta-glucan-containing cell wall polysaccharide biosynthetic process" to "fungal-type cell wall polysaccharide biosynthetic process"
* Changed definition of GO:0051278 from "The chemical reactions and pathways resulting in the formation of the polysaccharides which make up the chitin- and beta-glucan-containing cell wall." to "The chemical reactions and pathways resulting in the formation of the polysaccharides which make up the fungal-type cell wall."
* Added synonym "chitin- and beta-glucan-containing cell wall polysaccharide biosynthetic process" to GO:0051278
* Changed synonym scope of GO:0051278 from "Related" to "Narrow"