[Go-diff] GO update 07/08/2008

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.126 by 1.127

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034598
* Populated new object GO:0034598 (macro)
  * Changed name of GO:0034598 from "<new term>" to "phosphothreonine lyase activity"
  * Set definition of GO:0034598 to "Catalysis of the removal of the phosphate group from phosphothreonine by cleavage of the C-OP bond with the concomitant abstraction of the alpha proton, generating a double bond-containing product."
  * Added definition dbxref PMID:17303758 to GO:0034598
  * Added definition dbxref PMID:18084305 to GO:0034598
  * Copied GO:0034598 to GO:0016838 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034598
* Deleted GO:0005578 --OBO_REL:is_a--> GO:0044421
* Deleted GO:0016010 --OBO_REL:is_a--> GO:0044421
* Deleted GO:0016010 --part_of--> GO:0005605
* Deleted GO:0016010 --OBO_REL:is_a--> GO:0044420
* Deleted GO:0016010 --OBO_REL:is_a--> GO:0044444
* Deleted GO:0016011 --OBO_REL:is_a--> GO:0044444
* Deleted GO:0016011 --OBO_REL:is_a--> GO:0044421
* Deleted GO:0016011 --OBO_REL:is_a--> GO:0044420
* Deleted GO:0016012 --OBO_REL:is_a--> GO:0044420
* Deleted GO:0016012 --OBO_REL:is_a--> GO:0044444
* Deleted GO:0016013 --OBO_REL:is_a--> GO:0044459
* Deleted GO:0016013 --OBO_REL:is_a--> GO:0044420
* Deleted GO:0016013 --OBO_REL:is_a--> GO:0044444
* Deleted GO:0016014 --OBO_REL:is_a--> GO:0044420
* Deleted GO:0016014 --OBO_REL:is_a--> GO:0044444
* Deleted GO:0016014 --OBO_REL:is_a--> GO:0044459
* Changed definition of GO:0020008 from "A specialized secretory organelle, with a tubular or sacular shape, found in the apical complex." to "A large, club-shaped secretory organelle that forms part of the apical complex of an apicomplexan parasite, and consists of a bulbous body and a narrow electron-dense neck that extends through the conoid at the apical tip of the parasite. The rhoptry necks serve as ducts through which the contents of the rhoptries are secreted after attachment to the host has been completed and at the commencement of invasion. Rhoptry proteins function in the biogenesis and host organellar association of the parasitophorous vacuole."
* Deleted definition dbxref PMID:17305424 from GO:0020008
* Added definition dbxref PMID:11801218 to GO:0020008
* Added definition dbxref PMID:16002398 to GO:0020008
* Added synonym "paired organelles" to GO:0020008
* Added synonym "toxoneme" to GO:0020008
* Changed definition of GO:0020009 from "Elongated tubular organelle arranged longitudinally in the apical complex of an apicomplexan parasite." to "A small, elongated secretory organelle that forms part of the apical complex, located along the main axis of an apicomplexan parasite cell within the extreme apical region and at the periphery under the inner membrane complex. Of the three specialized secretory compartments identified in apicomplexans, micronemes discharge their contents first, during initial contact of the parasite's apical pole with the host cell surface. Micronemal proteins function during parasite attachment and penetration into the target cell."
* Added definition dbxref PMID:11801218 to GO:0020009
* Added synonym "sarconeme" to GO:0020009
* Deleted GO:0021748 --OBO_REL:is_a--> GO:0048856
* Deleted GO:0021748 --part_of--> GO:0021747
* Copied GO:0021748 to GO:0021747 with type OBO_REL:is_a
* Deleted GO:0021749 --OBO_REL:is_a--> GO:0048856
* Deleted GO:0021749 --part_of--> GO:0021747
* Copied GO:0021749 to GO:0021747 with type OBO_REL:is_a
* Deleted GO:0021895 --OBO_REL:is_a--> GO:0030154
* Copied GO:0021895 to GO:0030182 with type OBO_REL:is_a
* Deleted GO:0031012 --OBO_REL:is_a--> GO:0005575
* Copied GO:0031012 to GO:0044421 with type OBO_REL:is_a
* Added synonym "homotypic vacuole fusion" to GO:0042144
* Changed synonym scope of GO:0042144 from "Related" to "Exact"
* Changed definition of GO:0045177 from "The apical region of a cell." to "The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue."
* Deleted definition dbxref GOC:bf from GO:0045177
* Added definition dbxref GOC:mah to GO:0045177
* Added definition dbxref ISBN:0815316194 to GO:0045177
* Changed definition of GO:0045178 from "The basal region of a cell." to "The region of a cell situated near the base. For example, in a polarized epithelial cell, the basal surface rests on the basal lamina that separates the epithelium from other tissue."
* Deleted definition dbxref GOC:bf from GO:0045178
* Added definition dbxref GOC:bmah to GO:0045178
* Added definition dbxref ISBN:0185316194 to GO:0045178
* Added synonym "PIP biosynthesis" to GO:0046854
* Changed synonym scope of GO:0046854 from "Related" to "Narrow"
* Copied GO:0060113 to GO:0035315 with type OBO_REL:is_a