[Go-diff] GO update 07/09/2008

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.127 by 1.129

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0043925
* Created object of type obo:TERM with id GO:0043926
* Created object of type obo:TERM with id GO:0043927
* Created object of type obo:TERM with id GO:0043928
* Created object of type obo:TERM with id GO:0043929
* Created object of type obo:TERM with id GO:0043930
* Created object of type obo:TERM with id GO:0043931
* Created object of type obo:TERM with id GO:0043932
* Populated new object GO:0043925 (macro)
  * Changed name of GO:0043925 from "<new term>" to "microtubule-associated DASH complex"
  * Added comment "Note that this complex is conserved in fungi but has not been observed in metazoans."
  * Set definition of GO:0043925 to "A large protein complex, containing around 8-10 subunits in yeast, including Duo1p, Dam1p, Dad1p and Ask1p. The complex associates with microtubules and plays a role in spindle attachment, chromosome segregation and spindle stability."
  * Added definition dbxref GOC:jl to GO:0043925
  * Added definition dbxref GOC:mtg_mpo to GO:0043925
  * Added definition dbxref PMID:11782438 to GO:0043925
  * Added definition dbxref PMID:11799062 to GO:0043925
  * Copied GO:0043925 to GO:0005828 with type part_of
  * Copied GO:0043925 to GO:0005875 with type OBO_REL:is_a
  * Copied GO:0043925 to GO:0042729 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0043925
* Populated new object GO:0043926 (macro)
  * Changed name of GO:0043926 from "<new term>" to "kinetochore-associated DASH complex"
  * Added comment "Note that this complex is conserved in fungi but has not been observed in metazoans."
  * Set definition of GO:0043926 to "A large protein complex, containing around 8-10 subunits in yeast, including Duo1p, Dam1p, Dad1p and Ask1p. The complex associates with kinetochores and plays a role in spindle attachment, chromosome segregation and spindle stability."
  * Added definition dbxref GOC:jl to GO:0043926
  * Added definition dbxref GOC:mtg_mpo to GO:0043926
  * Added definition dbxref PMID:11782438 to GO:0043926
  * Added definition dbxref PMID:11799062 to GO:0043926
  * Added synonym "condensed nuclear chromosome kinetochore-associated DASH complex" to GO:0043926
  * Changed synonym scope of GO:0043926 from "Related" to "Exact"
  * Copied GO:0043926 to GO:0042729 with type OBO_REL:is_a
  * Copied GO:0043926 to GO:0000778 with type part_of
  * Assigned namespace "cellular_component" to GO:0043926
* Populated new object GO:0043927 (macro)
  * Changed name of GO:0043927 from "<new term>" to "exonucleolytic nuclear-transcribed mRNA catabolic process involved in endonucleolytic cleavage-dependent decay"
  * Set definition of GO:0043927 to "The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that occurs when the ends are not protected by the 5'-cap."
  * Added definition dbxref GOC:mtg_mpo to GO:0043927
  * Copied GO:0043927 to GO:0000291 with type OBO_REL:is_a
  * Copied GO:0043927 to GO:0000294 with type part_of
  * Assigned namespace "biological_process" to GO:0043927
* Populated new object GO:0043928 (macro)
  * Changed name of GO:0043928 from "<new term>" to "exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay"
  * Set definition of GO:0043928 to "The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that occurs when the ends are not protected by the 3'-poly(A) tail."
  * Added definition dbxref GOC:mtg_mpo to GO:0043928
  * Copied GO:0043928 to GO:0000290 with type part_of
  * Copied GO:0043928 to GO:0000291 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043928
* Populated new object GO:0043929 (macro)
  * Changed name of GO:0043929 from "<new term>" to "primary ovarian follicle growth during double layer follicle stage"
  * Set definition of GO:0043929 to "Increase in size of primary follicles including oocyte growth and granulosa and/or theca cell proliferation until more than one layer of granulosa cells is present (preantral follicle), during the double layer follicle stage of oogenesis."
  * Added definition dbxref GOC:mtg_mpo to GO:0043929
  * Copied GO:0043929 to GO:0048161 with type part_of
  * Copied GO:0043929 to GO:0001545 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043929
* Populated new object GO:0043930 (macro)
  * Changed name of GO:0043930 from "<new term>" to "primary ovarian follicle growth during primary follicle stage"
  * Set definition of GO:0043930 to "Increase in size of primary follicles including oocyte growth and granulosa and/or theca cell proliferation until more than one layer of granulosa cells is present (preantral follicle) during the primary follicle stage of oogenesis."
  * Added definition dbxref GOC:mtg_mpo to GO:0043930
  * Copied GO:0043930 to GO:0001545 with type OBO_REL:is_a
  * Copied GO:0043930 to GO:0048160 with type part_of
  * Assigned namespace "biological_process" to GO:0043930
* Populated new object GO:0043931 (macro)
  * Changed name of GO:0043931 from "<new term>" to "ossification involved in skeletal development"
  * Set definition of GO:0043931 to "The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone involved in the progression of the skeleton from its formation to its mature state."
  * Added definition dbxref GOC:mtg_mpo to GO:0043931
  * Copied GO:0043931 to GO:0001501 with type part_of
  * Copied GO:0043931 to GO:0001503 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043931
* Populated new object GO:0043932 (macro)
  * Changed name of GO:0043932 from "<new term>" to "ossification involved in bone remodeling"
  * Set definition of GO:0043932 to "The formation of bone involved in the continuous turnover of bone matrix and mineral."
  * Added definition dbxref GOC:mtg_mpo to GO:0043932
  * Added synonym "ossification involved in bone remodelling" to GO:0043932
  * Copied GO:0043932 to GO:0046849 with type part_of
  * Copied GO:0043932 to GO:0001503 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043932
* Deleted GO:0000291 --part_of--> GO:0000288
* Deleted GO:0000291 --part_of--> GO:0000294
* Changed name of GO:0000352 from "trans assembly of SL containing precatalytic spliceosome" to "trans assembly of SL-containing precatalytic spliceosome"
* Added definition dbxref GOC:mtg_mpo to GO:0000352
* Added synonym "trans assembly of spliced leader-containing precatalytic spliceosome" to GO:0000352
* Changed synonym scope of GO:0000352 from "Related" to "Exact"
* Added definition dbxref GOC:mtg_mpo to GO:0000354
* Added definition dbxref GOC:mtg_mpo to GO:0001503
* Deleted GO:0001503 --part_of--> GO:0046849
* Deleted GO:0001503 --part_of--> GO:0001501
* Added definition dbxref GOC:mtg_mpo to GO:0001545
* Deleted GO:0001545 --part_of--> GO:0048161
* Deleted GO:0001545 --part_of--> GO:0048160
* Changed definition of GO:0042729 from "A large protein complex, containing around 8-10 subunits in yeast, including Duo1p, Dam1p, Dad1p and Ask1p. Associating with microtubules and kinetochores, the complex plays a role spindle attachment, chromosome segregation and spindle stability." to "A large protein complex, containing around 8-10 subunits in yeast, including Duo1p, Dam1p, Dad1p and Ask1p. The complexes associate with kinetochores or microtubules and play a role spindle attachment, chromosome segregation and spindle stability."
* Deleted GO:0042729 --part_of--> GO:0000778
* Deleted GO:0042729 --OBO_REL:is_a--> GO:0044454
* Deleted GO:0042729 --OBO_REL:is_a--> GO:0005875
* Deleted GO:0042729 --part_of--> GO:0005828
* Copied GO:0042729 to GO:0043234 with type OBO_REL:is_a
* Changed name of GO:0045291 from "nuclear mRNA trans splicing, splice leader addition" to "nuclear mRNA trans splicing, SL addition"
* Added synonym "nuclear mRNA trans splicing, spliced leader addition" to GO:0045291
* Changed synonym scope of GO:0045291 from "Related" to "Exact"