[Go-diff] GO update 07/14/2008

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.130 by 1.131

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034599
* Created object of type obo:TERM with id GO:0034600
* Populated new object GO:0034599 (macro)
  * Changed name of GO:0034599 from "<new term>" to "cellular response to oxidative stress"
  * Set definition of GO:0034599 to "A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals."
  * Added definition dbxref GOC:mah to GO:0034599
  * Copied GO:0034599 to GO:0006979 with type OBO_REL:is_a
  * Copied GO:0034599 to GO:0033554 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034599
* Populated new object GO:0034600 (macro)
  * Changed name of GO:0034600 from "<new term>" to "macromolecular complex organization"
  * Set definition of GO:0034600 to "Any process by which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a macromolecular complex."
  * Added definition dbxref GOC:mah to GO:0034600
  * Copied GO:0034600 to GO:0008150 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034600
* Changed definition of GO:0000280 from "The partitioning of the nucleus and its genetic information." to "A process by which a cell nucleus is divided into two nuclei, with DNA and other nuclear contents distributed between the daughter nuclei."
* Deleted definition dbxref GOC:bf from GO:0000280
* Deleted definition dbxref GOC:jl from GO:0000280
* Deleted definition dbxref http://www.biology-online.org/ from GO:0000280
* Added definition dbxref GOC:mah to GO:0000280
* Deleted GO:0000280 --OBO_REL:is_a--> GO:0009987
* Copied GO:0000280 to GO:0048285 with type OBO_REL:is_a
* Changed definition of GO:0000417 from "A protein complex proposed to be involved in replication-indepdent chromatin assembly. For example, in Saccharomyces, the complex contains Hir1p, Hir2p, Hir3p, and Hpc2p." to "A protein complex proposed to be involved in replication-independent chromatin assembly. For example, in Saccharomyces, the complex contains Hir1p, Hir2p, Hir3p, and Hpc2p."
* Deleted GO:0006267 --OBO_REL:is_a--> GO:0043623
* Copied GO:0006267 to GO:0065004 with type OBO_REL:is_a
* Deleted GO:0006337 --OBO_REL:is_a--> GO:0031498
* Copied GO:0006337 to GO:0032986 with type OBO_REL:is_a
* Copied GO:0006337 to GO:0031498 with type part_of
* Deleted GO:0006461 --OBO_REL:is_a--> GO:0019538
* Copied GO:0006506 to GO:0044249 with type OBO_REL:is_a
* Copied GO:0016051 to GO:0009058 with type OBO_REL:is_a
* Copied GO:0016457 to GO:0065004 with type OBO_REL:is_a
* Copied GO:0032187 to GO:0051641 with type OBO_REL:is_a
* Changed definition of GO:0032594 from "The directed movement of a protein within a lipid bilayer." to "The directed movement of a protein from one location to another within a lipid bilayer."
* Deleted GO:0032984 --OBO_REL:is_a--> GO:0043170
* Copied GO:0032984 to GO:0034600 with type OBO_REL:is_a
* Changed definition of GO:0034367 from "The acquisition, loss, or modification of molecules within a complex. The remodeling process begins with an existing complex, and ends with an altered complex." to "The acquisition, loss, or modification of macromolecules within a complex, resulting in the alteration of an existing complex."
* Added definition dbxref GOC:mtg_mpo to GO:0034367
* Deleted GO:0034367 --OBO_REL:is_a--> GO:0043170
* Copied GO:0034367 to GO:0034600 with type OBO_REL:is_a
* Copied GO:0042715 to GO:0065004 with type OBO_REL:is_a
* Copied GO:0042776 to GO:0006839 with type OBO_REL:is_a
* Deleted GO:0043241 --OBO_REL:is_a--> GO:0019538
* Deleted GO:0051205 --OBO_REL:is_a--> GO:0032594
* Copied GO:0051205 to GO:0008104 with type OBO_REL:is_a
* Copied GO:0051904 to GO:0006810 with type OBO_REL:is_a
* Deleted GO:0065003 --OBO_REL:is_a--> GO:0043170
* Copied GO:0065003 to GO:0034600 with type OBO_REL:is_a