[Go-diff] GO update 07/15/2008

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.131 by 1.133

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010628
* Created object of type obo:TERM with id GO:0010629
* Created object of type obo:TERM with id GO:0010630
* Created object of type obo:TERM with id GO:0034601
* Created object of type obo:TERM with id GO:0034602
* Created object of type obo:TERM with id GO:0034603
* Created object of type obo:TERM with id GO:0034604
* Created object of type obo:TERM with id GO:0034605
* Populated new object GO:0010628 (macro)
  * Changed name of GO:0010628 from "<new term>" to "positive regulation of gene expression"
  * Set definition of GO:0010628 to "Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form."
  * Added definition dbxref GOC:dph to GO:0010628
  * Added definition dbxref GOC:tb to GO:0010628
  * Copied GO:0010628 to GO:0010468 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010628
* Populated new object GO:0010629 (macro)
  * Changed name of GO:0010629 from "<new term>" to "negative regulation of gene expression"
  * Set definition of GO:0010629 to "Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form."
  * Added definition dbxref GOC:dph to GO:0010629
  * Added definition dbxref GOC:tb to GO:0010629
  * Copied GO:0010629 to GO:0010468 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010629
* Populated new object GO:0010630 (macro)
  * Changed name of GO:0010630 from "<new term>" to "regulation of transcription, start site selection"
  * Set definition of GO:0010630 to "Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA by a mechanism that selects the start site along that template."
  * Added definition dbxref GOC:dph to GO:0010630
  * Added definition dbxref GOC:tb to GO:0010630
  * Copied GO:0010630 to GO:0045449 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010630
* Populated new object GO:0034601 (macro)
  * Changed name of GO:0034601 from "<new term>" to "oxoglutarate dehydrogenase [NAD(P)+] activity"
  * Set definition of GO:0034601 to "Catalysis of the reaction: 2-oxoglutarate + CoA + NAD(P)+ = succinyl-CoA + CO2 + NAD(P)H."
  * Added definition dbxref GOC:mah to GO:0034601
  * Added general dbxref EC:1.2.1.52 to GO:0034601
  * Added general dbxref MetaCyc:OXOGLUTARATE-DEHYDROGENASE-(NADP+)-RXN to GO:0034601
  * Copied GO:0034601 to GO:0016620 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034601
* Populated new object GO:0034602 (macro)
  * Changed name of GO:0034602 from "<new term>" to "oxoglutarate dehydrogenase (NAD+) activity"
  * Set definition of GO:0034602 to "Catalysis of the reaction: 2-oxoglutarate + CoA + NAD+ = succinyl-CoA + CO2 + NADH."
  * Added definition dbxref GOC:mah to GO:0034602
  * Added general dbxref EC:1.2.1.52 to GO:0034602
  * Added general dbxref MetaCyc:OXOGLUTARATE-DEHYDROGENASE-(NADP+)-RXN to GO:0034602
  * Copied GO:0034602 to GO:0034601 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034602
* Populated new object GO:0034603 (macro)
  * Changed name of GO:0034603 from "<new term>" to "pyruvate dehydrogenase [NAD(P)+] activity"
  * Set definition of GO:0034603 to "Catalysis of the reaction: pyruvate + CoA + NAD(P)+ = acetyl-CoA + CO2 + NAD(P)H."
  * Added definition dbxref GOC:mah to GO:0034603
  * Added general dbxref EC:1.2.1.51 to GO:0034603
  * Added general dbxref MetaCyc:PYRUVATE-DEHYDROGENASE-(NADP+)-RXN to GO:0034603
  * Copied GO:0034603 to GO:0016620 with type OBO_REL:is_a
  * Copied GO:0034603 to GO:0004738 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034603
* Populated new object GO:0034604 (macro)
  * Changed name of GO:0034604 from "<new term>" to "pyruvate dehydrogenase (NAD+) activity"
  * Set definition of GO:0034604 to "Catalysis of the reaction: pyruvate + CoA + NAD+ = acetyl-CoA + CO2 + NADH."
  * Added definition dbxref GOC:mah to GO:0034604
  * Added general dbxref EC:1.2.1.51 to GO:0034604
  * Added general dbxref MetaCyc:PYRUVATE-DEHYDROGENASE-(NADP+)-RXN to GO:0034604
  * Copied GO:0034604 to GO:0034603 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034604
* Populated new object GO:0034605 (macro)
  * Changed name of GO:0034605 from "<new term>" to "cellular response to heat"
  * Set definition of GO:0034605 to "A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism."
  * Added definition dbxref GOC:mah to GO:0034605
  * Copied GO:0034605 to GO:0033554 with type OBO_REL:is_a
  * Copied GO:0034605 to GO:0009408 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034605
* Deleted GO:0005176 --OBO_REL:is_a--> GO:0005125
* Copied GO:0005176 to GO:0005102 with type OBO_REL:is_a
* Copied GO:0008634 to GO:0010629 with type OBO_REL:is_a
* Copied GO:0016481 to GO:0010629 with type OBO_REL:is_a
* Deleted GO:0031990 --OBO_REL:is_a--> GO:0009408
* Copied GO:0031990 to GO:0034605 with type OBO_REL:is_a
* Deleted GO:0035080 --OBO_REL:is_a--> GO:0009408
* Copied GO:0035080 to GO:0034605 with type OBO_REL:is_a
* Deleted GO:0043125 --OBO_REL:is_a--> GO:0005125
* Copied GO:0043125 to GO:0005102 with type OBO_REL:is_a
* Copied GO:0045814 to GO:0010629 with type OBO_REL:is_a
* Copied GO:0045815 to GO:0010628 with type OBO_REL:is_a
* Copied GO:0045871 to GO:0010629 with type OBO_REL:is_a
* Copied GO:0045872 to GO:0010628 with type OBO_REL:is_a
* Copied GO:0045885 to GO:0010628 with type OBO_REL:is_a
* Copied GO:0045941 to GO:0010628 with type OBO_REL:is_a
* Deleted GO:0050164 --OBO_REL:is_a--> GO:0016620
* Copied GO:0050164 to GO:0034601 with type OBO_REL:is_a
* Deleted GO:0050243 --OBO_REL:is_a--> GO:0004738
* Deleted GO:0050243 --OBO_REL:is_a--> GO:0016620
* Copied GO:0050243 to GO:0034603 with type OBO_REL:is_a