[Go-diff] GO update 07/17/2008

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.133 by 1.134

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Added comment "This term was made obsolete because it implies that every protein that is ubiquitinated is also subsequently deubiquinitated, which is not true. Also, the process ontology does not include analogous terms for other small modifiers."
* Changed definition of GO:0006512 from "The cyclical process by which one or more ubiquitin moieties are added to (ubiquitination) and removed from (deubiquitination) a protein." to "OBSOLETE. The cyclical process by which one or more ubiquitin moieties are added to (ubiquitination) and removed from (deubiquitination) a protein."
* Deleted GO:0006512 --OBO_REL:is_a--> GO:0043687
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 1dd3e6f
* Added synonym "protein sorting along secretory pathway" to GO:0006605
* Changed synonym scope of GO:0006605 from "Related" to "Narrow"
* Added synonym "synaptic vesicle fusion" to GO:0016189
* Changed synonym scope of GO:0016189 from "Related" to "Broad"
* Deleted synonym "synaptic vesicle fission" from GO:0016192
* Deleted synonym "synaptic vesicle fusion" from GO:0016192
* Deleted synonym "synaptic vesicle internalization" from GO:0016192
* Deleted synonym "synaptic vesicle retrieval" from GO:0016192
* Added synonym "protein sorting along secretory pathway" to GO:0016192
* Deleted GO:0016567 --OBO_REL:is_a--> GO:0006512
* Copied GO:0016567 to GO:0043687 with type OBO_REL:is_a
* Deleted GO:0016579 --OBO_REL:is_a--> GO:0006512
* Copied GO:0016579 to GO:0043687 with type OBO_REL:is_a
* Added synonym "synaptic vesicle fusion" to GO:0031629
* Changed synonym scope of GO:0031629 from "Related" to "Broad"
* Added synonym "synaptic vesicle internalization" to GO:0031629
* Added comment "This term was made obsolete because its definition is very similar to that of its parent term, actin cortical patch localization (GO:0051666), but somewhat unclear, and not similar enough to merge the terms."
* Changed definition of GO:0048228 from "Any process that establish the spatial arrangement of actin cortical patches. An actin cortical patch is a discrete actin-containing structure found at the plasma membrane in fungal cells." to "OBSOLETE. Any process that establish the spatial arrangement of actin cortical patches. An actin cortical patch is a discrete actin-containing structure found at the plasma membrane in fungal cells."
* Deleted GO:0048228 --OBO_REL:is_a--> GO:0030866
* Deleted GO:0048228 --OBO_REL:is_a--> GO:0051666
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 1ee3434
* Changed definition of GO:0048488 from "Invagination of the axonal plasma membrane creating a membrane bound vesicle. Without this process the presynaptic terminal would swell up due to fusion of vesicle membranes during neurotransmitter release. The vesicles created may subsequently be used for neurotransmitter storage/release." to "Invagination of the axonal plasma membrane creating a membrane-bounded vesicle. Without this process the presynaptic terminal would swell up due to fusion of vesicle membranes during neurotransmitter release. The vesicles created may subsequently be used for neurotransmitter storage/release."
* Added synonym "synaptic vesicle retrieval" to GO:0048488
* Added synonym "synaptic vesicle fission" to GO:0048489
* Added synonym "synaptic vesicle fusion" to GO:0048489