[Go-diff] GO update 07/22/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Tue Jul 22 21:30:45 PDT 2008 

OBODIFF of gene_ontology_write.obo version 1.134 by 1.139

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010631
* Created object of type obo:TERM with id GO:0010632
* Created object of type obo:TERM with id GO:0010633
* Created object of type obo:TERM with id GO:0010634
* Created object of type obo:TERM with id GO:0010635
* Created object of type obo:TERM with id GO:0010636
* Created object of type obo:TERM with id GO:0010637
* Created object of type obo:TERM with id GO:0010638
* Created object of type obo:TERM with id GO:0010639
* Created object of type obo:TERM with id GO:0010640
* Created object of type obo:TERM with id GO:0010641
* Created object of type obo:TERM with id GO:0010642
* Created object of type obo:TERM with id GO:0043933
* Created object of type obo:TERM with id GO:0060269
* Created object of type obo:TERM with id GO:0060270
* Created object of type obo:TERM with id GO:0060271
* Created object of type obo:TERM with id GO:0060272
* Created object of type obo:TERM with id GO:0060273
* Populated new object GO:0010631 (macro)
  * Changed name of GO:0010631 from "<new term>" to "epithelial cell migration"
  * Set definition of GO:0010631 to "The orderly movement of epithelial cells from one site to another, often during the development of a multicellular organism."
  * Added definition dbxref GOC:dph to GO:0010631
  * Added definition dbxref GOC:tb to GO:0010631
  * Copied GO:0010631 to GO:0016477 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010631
* Populated new object GO:0010632 (macro)
  * Changed name of GO:0010632 from "<new term>" to "regulation of epithelial cell migration"
  * Set definition of GO:0010632 to "Any process that modulates the frequency, rate or extent of epithelial cell migration."
  * Added definition dbxref GOC:dph to GO:0010632
  * Added definition dbxref GOC:tb to GO:0010632
  * Copied GO:0010632 to GO:0010631 with type regulates
  * Copied GO:0010632 to GO:0030334 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010632
* Populated new object GO:0010633 (macro)
  * Changed name of GO:0010633 from "<new term>" to "negative regulation of epithelial cell migration"
  * Set definition of GO:0010633 to "Any process that stops, prevents or reduces the frequency, rate or extent of epithelial cell migration."
  * Added definition dbxref GOC:dph to GO:0010633
  * Added definition dbxref GOC:tb to GO:0010633
  * Copied GO:0010633 to GO:0030336 with type OBO_REL:is_a
  * Copied GO:0010633 to GO:0010631 with type negatively_regulates
  * Copied GO:0010633 to GO:0010632 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010633
* Populated new object GO:0010634 (macro)
  * Changed name of GO:0010634 from "<new term>" to "positive regulation of epithelial cell migration"
  * Set definition of GO:0010634 to "Any process that activates or increases the frequency, rate or extent of epithelial cell migration."
  * Added definition dbxref GOC:dph to GO:0010634
  * Added definition dbxref GOC:tb to GO:0010634
  * Copied GO:0010634 to GO:0030335 with type OBO_REL:is_a
  * Copied GO:0010634 to GO:0010632 with type OBO_REL:is_a
  * Copied GO:0010634 to GO:0010631 with type positively_regulates
  * Assigned namespace "biological_process" to GO:0010634
* Populated new object GO:0010635 (macro)
  * Changed name of GO:0010635 from "<new term>" to "regulation of mitochondrial fusion"
  * Set definition of GO:0010635 to "Any process that modulates the frequency, rate or extent of merging of two or more mitochondria within a cell to form a single compartment."
  * Added definition dbxref GOC:dph to GO:0010635
  * Added definition dbxref GOC:tb to GO:0010635
  * Copied GO:0010635 to GO:0008053 with type regulates
  * Copied GO:0010635 to GO:0033043 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010635
* Populated new object GO:0010636 (macro)
  * Changed name of GO:0010636 from "<new term>" to "positive regulation of mitochondrial fusion"
  * Set definition of GO:0010636 to "Any process that increases the frequency, rate or extent of merging of two or more mitochondria within a cell to form a single compartment."
  * Added definition dbxref GOC:dph to GO:0010636
  * Added definition dbxref GOC:tb to GO:0010636
  * Copied GO:0010636 to GO:0010638 with type OBO_REL:is_a
  * Copied GO:0010636 to GO:0010635 with type OBO_REL:is_a
  * Copied GO:0010636 to GO:0008053 with type positively_regulates
  * Assigned namespace "biological_process" to GO:0010636
* Populated new object GO:0010637 (macro)
  * Changed name of GO:0010637 from "<new term>" to "negative regulation of mitochondrial fusion"
  * Set definition of GO:0010637 to "Any process that decreases the frequency, rate or extent of merging of two or more mitochondria within a cell to form a single compartment."
  * Added definition dbxref GOC:dph to GO:0010637
  * Added definition dbxref GOC:tb to GO:0010637
  * Copied GO:0010637 to GO:0008053 with type negatively_regulates
  * Copied GO:0010637 to GO:0010639 with type OBO_REL:is_a
  * Copied GO:0010637 to GO:0010635 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010637
* Populated new object GO:0010638 (macro)
  * Changed name of GO:0010638 from "<new term>" to "positive regulation of organelle organization and biogenesis"
  * Set definition of GO:0010638 to "Any process that increases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle."
  * Added definition dbxref GOC:dph to GO:0010638
  * Added definition dbxref GOC:tb to GO:0010638
  * Copied GO:0010638 to GO:0051130 with type OBO_REL:is_a
  * Copied GO:0010638 to GO:0033043 with type OBO_REL:is_a
  * Copied GO:0010638 to GO:0006996 with type positively_regulates
  * Assigned namespace "biological_process" to GO:0010638
* Populated new object GO:0010639 (macro)
  * Changed name of GO:0010639 from "<new term>" to "negative regulation of organelle organization and biogenesis"
  * Set definition of GO:0010639 to "Any process that decreases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle."
  * Added definition dbxref GOC:dph to GO:0010639
  * Added definition dbxref GOC:tb to GO:0010639
  * Copied GO:0010639 to GO:0006996 with type negatively_regulates
  * Copied GO:0010639 to GO:0033043 with type OBO_REL:is_a
  * Copied GO:0010639 to GO:0051129 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010639
* Populated new object GO:0010640 (macro)
  * Changed name of GO:0010640 from "<new term>" to "regulation of platelet-derived growth factor receptor signaling pathway"
  * Set definition of GO:0010640 to "Any process that modulates the frequency, rate or extent of the
platelet-derived growth factor receptor signaling pathway."
  * Added definition dbxref GOC:dph to GO:0010640
  * Added definition dbxref GOC:hjd to GO:0010640
  * Added definition dbxref GOC:tb to GO:0010640
  * Copied GO:0010640 to GO:0009966 with type OBO_REL:is_a
  * Copied GO:0010640 to GO:0048008 with type regulates
  * Assigned namespace "biological_process" to GO:0010640
* Populated new object GO:0010641 (macro)
  * Changed name of GO:0010641 from "<new term>" to "positive regulation of platelet-derived growth factor receptor signaling pathway"
  * Set definition of GO:0010641 to "Any process that increases the frequency, rate or extent of the
platelet-derived growth factor receptor signaling pathway."
  * Added definition dbxref GOC:dph to GO:0010641
  * Added definition dbxref GOC:hjd to GO:0010641
  * Added definition dbxref GOC:tb to GO:0010641
  * Copied GO:0010641 to GO:0048008 with type positively_regulates
  * Copied GO:0010641 to GO:0010640 with type OBO_REL:is_a
  * Copied GO:0010641 to GO:0009967 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010641
* Populated new object GO:0010642 (macro)
  * Changed name of GO:0010642 from "<new term>" to "negative regulation of platelet-derived growth factor receptor signaling pathway"
  * Set definition of GO:0010642 to "Any process that stops, prevents or reduces the frequency, rate or
extent of the platelet-derived growth factor receptor signaling pathway."
  * Added definition dbxref GOC:dph to GO:0010642
  * Added definition dbxref GOC:hjd to GO:0010642
  * Added definition dbxref GOC:tb to GO:0010642
  * Copied GO:0010642 to GO:0010640 with type OBO_REL:is_a
  * Copied GO:0010642 to GO:0048008 with type negatively_regulates
  * Copied GO:0010642 to GO:0009968 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010642
* Populated new object GO:0043933 (macro)
  * Changed name of GO:0043933 from "<new term>" to "macromolecular complex subunit organization"
  * Set definition of GO:0043933 to "The acquisition, loss, or modification of macromolecules resulting in the formation, disassembly or alteration of a macromolecular complex."
  * Added definition dbxref GOC:mtg_mpo to GO:0043933
  * Added synonym "macromolecular complex subunit organisation" to GO:0043933
  * Changed synonym scope of GO:0043933 from "Related" to "Exact"
  * Copied GO:0043933 to GO:0008150 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043933
* Populated new object GO:0060269 (macro)
  * Changed name of GO:0060269 from "<new term>" to "centripetally migrating follicle cell migration"
  * Set definition of GO:0060269 to "The cell migration process in which a follicle cell migrates as part of an epithelial sheet between the nurse cells and the oocyte. At the end of migration, they cover the anterior of the oocyte."
  * Added definition dbxref GOC:dph to GO:0060269
  * Copied GO:0060269 to GO:0007297 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060269
* Populated new object GO:0060270 (macro)
  * Changed name of GO:0060270 from "<new term>" to "main body follicle cell migration"
  * Set definition of GO:0060270 to "The ovarian follicle cell migration process in which follicle cells migrate posteeriorly to form a columnar epithelium over the oocyte."
  * Added definition dbxref GOC:dph to GO:0060270
  * Copied GO:0060270 to GO:0007297 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060270
* Populated new object GO:0060271 (macro)
  * Changed name of GO:0060271 from "<new term>" to "cilium morphogenesis"
  * Set definition of GO:0060271 to "A process that is carried out at the cellular level and by which the structure of a cilium is organized. Morphogenesis pertains to the creation of form."
  * Added definition dbxref GOC:dph to GO:0060271
  * Added synonym "cilium organization" to GO:0060271
  * Added general dbxref GOC:dph to synonym cilium organization of GO:0060271
  * Copied GO:0060271 to GO:0048858 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060271
* Populated new object GO:0060272 (macro)
  * Changed name of GO:0060272 from "<new term>" to "embryonic skeletal joint morphogenesis"
  * Set definition of GO:0060272 to "The process by which the anatomical structures of skeletal joints are generated and organized during the embryonic phase. A joint is the connecting structure between the bones of the skeleton. Morphogenesis pertains to the creation of form."
  * Added definition dbxref GOC:dph to GO:0060272
  * Copied GO:0060272 to GO:0048704 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060272
* Populated new object GO:0060273 (macro)
  * Changed name of GO:0060273 from "<new term>" to "crying behavior"
  * Set definition of GO:0060273 to "The behavior in which an organism sheds tears, often accompanied by non-verbal vocalizations and in response to external or internal stimuli."
  * Added definition dbxref GOC:dph to GO:0060273
  * Copied GO:0060273 to GO:0007610 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060273
* Deleted GO:0007427 --OBO_REL:is_a--> GO:0016477
* Copied GO:0007427 to GO:0010631 with type OBO_REL:is_a
* Copied GO:0031057 to GO:0010639 with type OBO_REL:is_a
* Deleted GO:0031058 --OBO_REL:is_a--> GO:0051130
* Copied GO:0031058 to GO:0010638 with type OBO_REL:is_a
* Deleted GO:0032205 --OBO_REL:is_a--> GO:0051129
* Copied GO:0032205 to GO:0010639 with type OBO_REL:is_a
* Deleted GO:0032206 --OBO_REL:is_a--> GO:0051130
* Copied GO:0032206 to GO:0010638 with type OBO_REL:is_a
* Copied GO:0032989 to GO:0048869 with type OBO_REL:is_a
* Deleted GO:0033026 --OBO_REL:is_a--> GO:0034351
* Deleted GO:0033027 --OBO_REL:is_a--> GO:0034352
* Deleted GO:0033030 --OBO_REL:is_a--> GO:0034351
* Deleted GO:0033031 --OBO_REL:is_a--> GO:0034352
* Deleted GO:0033046 --OBO_REL:is_a--> GO:0051129
* Copied GO:0033046 to GO:0010639 with type OBO_REL:is_a
* Deleted GO:0034351 --OBO_REL:is_a--> GO:0034391
* Deleted GO:0034352 --OBO_REL:is_a--> GO:0034391
* Changed name of GO:0042254 from "ribosome biogenesis and assembly" to "ribosome biogenesis"
* Deleted synonym "ribosome biogenesis" from GO:0042254
* Added synonym "ribosome biogenesis and assembly" to GO:0042254
* Changed synonym scope of GO:0042254 from "Related" to "Exact"
* Changed name of GO:0042273 from "ribosomal large subunit biogenesis and assembly" to "ribosomal large subunit biogenesis"
* Added synonym "ribosomal large subunit biogenesis and assembly" to GO:0042273
* Changed synonym scope of GO:0042273 from "Related" to "Exact"
* Changed name of GO:0042274 from "ribosomal small subunit biogenesis and assembly" to "ribosomal small subunit biogenesis"
* Added synonym "ribosomal small subunit biogenesis and assembly" to GO:0042274
* Changed synonym scope of GO:0042274 from "Related" to "Exact"
* Deleted GO:0045701 --OBO_REL:is_a--> GO:0051129
* Copied GO:0045701 to GO:0010639 with type OBO_REL:is_a
* Deleted GO:0045702 --OBO_REL:is_a--> GO:0051130
* Copied GO:0045702 to GO:0010638 with type OBO_REL:is_a
* Deleted GO:0045798 --OBO_REL:is_a--> GO:0051129
* Copied GO:0045798 to GO:0010639 with type OBO_REL:is_a
* Deleted GO:0045799 --OBO_REL:is_a--> GO:0051130
* Copied GO:0045799 to GO:0010638 with type OBO_REL:is_a
* Deleted GO:0045875 --OBO_REL:is_a--> GO:0051129
* Copied GO:0045875 to GO:0010639 with type OBO_REL:is_a
* Deleted GO:0045876 --OBO_REL:is_a--> GO:0051130
* Copied GO:0045876 to GO:0010638 with type OBO_REL:is_a
* Deleted GO:0046606 --OBO_REL:is_a--> GO:0051129
* Copied GO:0046606 to GO:0010639 with type OBO_REL:is_a
* Deleted GO:0046607 --OBO_REL:is_a--> GO:0051130
* Copied GO:0046607 to GO:0010638 with type OBO_REL:is_a
* Deleted GO:0048701 --part_of--> GO:0048704
* Copied GO:0048701 to GO:0048704 with type OBO_REL:is_a
* Changed definition of GO:0048704 from "The process by which the anatomical structures of skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form." to "The process by which the anatomical structures of the skeleton are generated and organized during the embryonic phase. Morphogenesis pertains to the creation of form."
* Changed definition of GO:0048705 from "The process by which the anatomical structures of skeleton are generated and organized. Morphogenesis pertains to the creation of form." to "The process by which the anatomical structures of the skeleton are generated and organized. Morphogenesis pertains to the creation of form."
* Deleted GO:0051494 --OBO_REL:is_a--> GO:0051129
* Copied GO:0051494 to GO:0010639 with type OBO_REL:is_a
* Deleted GO:0051495 --OBO_REL:is_a--> GO:0051130
* Copied GO:0051495 to GO:0010638 with type OBO_REL:is_a
* Deleted GO:0060211 --OBO_REL:is_a--> GO:0031440
* Copied GO:0060211 to GO:0060255 with type OBO_REL:is_a
* Copied GO:0060211 to GO:0051252 with type OBO_REL:is_a

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