[Go-diff] GO update 07/25/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Fri Jul 25 21:30:46 PDT 2008 

OBODIFF of gene_ontology_write.obo version 1.142 by 1.145

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034617
* Created object of type obo:TERM with id GO:0034618
* Populated new object GO:0034617 (macro)
  * Changed name of GO:0034617 from "<new term>" to "tetrahydrobiopterin binding"
  * Set definition of GO:0034617 to "Interacting selectively with a tetrahydrobiopterin, 5,6,7,8-tetrahydrobiopterin or a derivative thereof; tetrahydrobiopterins are enzyme cofactors that carry electrons in redox reactions."
  * Added definition dbxref ChEBI:15372 to GO:0034617
  * Added definition dbxref GOC:mah to GO:0034617
  * Added definition dbxref GOC:rl to GO:0034617
  * Added synonym "BH4 binding" to GO:0034617
  * Changed synonym scope of GO:0034617 from "Related" to "Exact"
  * Added synonym "H4biopterin binding" to GO:0034617
  * Changed synonym scope of GO:0034617 from "Related" to "Exact"
  * Added synonym "sapropterin binding" to GO:0034617
  * Changed synonym scope of GO:0034617 from "Related" to "Exact"
  * Copied GO:0034617 to GO:0050662 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034617
* Populated new object GO:0034618 (macro)
  * Changed name of GO:0034618 from "<new term>" to "arginine binding"
  * Set definition of GO:0034618 to "Interacting selectively with 2-amino-5-(carbamimidamido)pentanoic acid."
  * Added definition dbxref ChEBI:29016 to GO:0034618
  * Added definition dbxref GOC:rl to GO:0034618
  * Added synonym "aminopentanoic acid binding" to GO:0034618
  * Added synonym "Arg binding" to GO:0034618
  * Changed synonym scope of GO:0034618 from "Related" to "Exact"
  * Copied GO:0034618 to GO:0016597 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034618
* Deleted GO:0000262 --OBO_REL:is_a--> GO:0005694
* Copied GO:0000262 to GO:0000229 with type OBO_REL:is_a
* Added GO:0000782 to category gosubset_prok
* Changed definition of GO:0000821 from "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving arginine, 2-amino-5-guanidinopentanoic acid." to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid."
* Added definition dbxref ChEBI:29016 to GO:0000821
* Deleted GO:0000835 --OBO_REL:is_a--> GO:0000151
* Copied GO:0000835 to GO:0000153 with type OBO_REL:is_a
* Deleted synonym "<new synonym>" from GO:0004445
* Changed comment from "Note that this term does not refer to vesicle, but instead to structures in which lipids do not necessarily form bilayers." to "Note that this term does not refer to vesicles, but instead to structures in which lipids do not necessarily form bilayers."
* Deleted GO:0005839 --OBO_REL:is_a--> GO:0044445
* Copied GO:0005839 to GO:0044424 with type OBO_REL:is_a
* Changed definition of GO:0006525 from "The chemical reactions and pathways involving arginine, 2-amino-5-guanidinopentanoic acid." to "The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid."
* Added definition dbxref ChEBI:29016 to GO:0006525
* Changed definition of GO:0006526 from "The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-guanidinopentanoic acid, a chiral alpha-amino acid found in peptide linkage in proteins." to "The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid."
* Added definition dbxref ChEBI:29016 to GO:0006526
* Changed definition of GO:0006527 from "The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-guanidinopentanoic acid, a chiral alpha-amino acid found in peptide linkage in proteins." to "The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid."
* Added definition dbxref ChEBI:29016 to GO:0006527
* Changed definition of GO:0007126 from "Progression through meiosis, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiosis occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations." to "Progression through the nuclear division phase of a meiotic cell cycle, the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations."
* Deleted GO:0009508 --OBO_REL:is_a--> GO:0005694
* Copied GO:0009508 to GO:0000229 with type OBO_REL:is_a
* Added GO:0010468 to category gosubset_prok
* Added GO:0010528 to category gosubset_prok
* Added GO:0010556 to category gosubset_prok
* Added GO:0010559 to category gosubset_prok
* Added GO:0015322 to category gosubset_prok
* Added GO:0015844 to category gosubset_prok
* Added GO:0016409 to category gosubset_prok
* Added GO:0016653 to category gosubset_prok
* Set definition of GO:0016890 to "Catalysis of the hydrolysis of ester linkages at specific sites within a deoxyribonucleic acid molecule by creating internal breaks."
* Added definition dbxref GOC:jl to GO:0016890
* Added GO:0016890 to category gosubset_prok
* Copied GO:0020003 to GO:0043230 with type OBO_REL:is_a
* Changed definition of GO:0020017 from "The lipid bilayer surrounding the flagellum; continuous with the plasma membrane." to "The portion of the plasma membrane surrounding the flagellum."
* Added definition dbxref GOC:mah to GO:0020017
* Copied GO:0020017 to GO:0031253 with type OBO_REL:is_a
* Added GO:0022803 to category gosubset_prok
* Added GO:0022804 to category gosubset_prok
* Added GO:0022829 to category gosubset_prok
* Added GO:0022857 to category gosubset_prok
* Added GO:0022884 to category gosubset_prok
* Added GO:0022885 to category gosubset_prok
* Added GO:0022891 to category gosubset_prok
* Added GO:0022892 to category gosubset_prok
* Added GO:0022898 to category gosubset_prok
* Added GO:0022900 to category gosubset_prok
* Copied GO:0030663 to GO:0030660 with type OBO_REL:is_a
* Deleted GO:0030672 --OBO_REL:is_a--> GO:0012506
* Copied GO:0030672 to GO:0030665 with type OBO_REL:is_a
* Changed definition of GO:0030673 from "The plasma membrane of an axon; it is a specialized trilaminar random mosaic of protein molecules floating within a fluid matrix of highly mobile phospholipid molecules, 7-8 nm in thickness." to "The portion of the plasma membrane surrounding an axon; it is a specialized trilaminar random mosaic of protein molecules floating within a fluid matrix of highly mobile phospholipid molecules, 7-8 nm in thickness."
* Copied GO:0030981 to GO:0015630 with type part_of
* Added GO:0031341 to category gosubset_prok
* Changed name of GO:0032053 from "basal body organization and biogenesis" to "microtubule basal body organization and biogenesis"
* Changed definition of GO:0032053 from "A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a basal body, a short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium or flagellum." to "A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a microtubule basal body, a short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium or flagellum."
* Changed name of GO:0032054 from "basal body duplication" to "microtubule basal body duplication"
* Changed definition of GO:0032054 from "Construction of a new basal body." to "Construction of a new microtubule basal body."
* Added GO:0032268 to category gosubset_prok
* Added GO:0032409 to category gosubset_prok
* Added GO:0032412 to category gosubset_prok
* Added GO:0032505 to category gosubset_prok
* Added GO:0032768 to category gosubset_prok
* Added GO:0032844 to category gosubset_prok
* Added GO:0032881 to category gosubset_prok
* Added GO:0032885 to category gosubset_prok
* Added GO:0032984 to category gosubset_prok
* Added GO:0033020 to category gosubset_prok
* Added GO:0033059 to category gosubset_prok
* Deleted GO:0033115 --OBO_REL:is_a--> GO:0055035
* Copied GO:0033115 to GO:0055035 with type part_of
* Copied GO:0033115 to GO:0009843 with type OBO_REL:is_a
* Added GO:0033238 to category gosubset_prok
* Added GO:0033500 to category gosubset_prok
* Added GO:0033619 to category gosubset_prok
* Added GO:0033643 to category gosubset_prok
* Added GO:0033644 to category gosubset_prok
* Added GO:0033646 to category gosubset_prok
* Added GO:0033647 to category gosubset_prok
* Added GO:0033648 to category gosubset_prok
* Added GO:0033655 to category gosubset_prok
* Added GO:0034061 to category gosubset_prok
* Added GO:0034062 to category gosubset_prok
* Added GO:0034068 to category gosubset_prok
* Added GO:0034069 to category gosubset_prok
* Added GO:0034212 to category gosubset_prok
* Added GO:0034308 to category gosubset_prok
* Added GO:0034311 to category gosubset_prok
* Added GO:0034338 to category gosubset_prok
* Added GO:0034357 to category gosubset_prok
* Added GO:0034595 to category gosubset_prok
* Removed GO:0035103 from category gosubset_prok
* Removed GO:0035104 from category gosubset_prok
* Deleted GO:0042650 --OBO_REL:is_a--> GO:0042651
* Copied GO:0042650 to GO:0055035 with type OBO_REL:is_a
* Added GO:0043244 to category gosubset_prok
* Added GO:0043470 to category gosubset_prok
* Added GO:0043471 to category gosubset_prok
* Added GO:0043900 to category gosubset_prok
* Changed definition of GO:0043933 from "The acquisition, loss, or modification of macromolecules resulting in the formation, disassembly or alteration of a macromolecular complex." to "Any process by which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a macromolecular complex."
* Added GO:0043933 to category gosubset_prok
* Added GO:0048583 to category gosubset_prok
* Deleted GO:0048786 --OBO_REL:is_a--> GO:0043232
* Added GO:0050795 to category gosubset_prok
* Deleted GO:0055028 --OBO_REL:is_a--> GO:0005874
* Copied GO:0055028 to GO:0005881 with type OBO_REL:is_a
* Added GO:0055086 to category gosubset_prok
* Added GO:0055114 to category gosubset_prok
* Added GO:0060191 to category gosubset_prok
* Added GO:0060255 to category gosubset_prok

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