[Go-diff] GO update 06/04/2008

Wed Jun 4 21:30:45 PDT 2008

OBODIFF of gene_ontology_write.obo version 1.92 by 1.95

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010611
* Created object of type obo:TERM with id GO:0010612
* Created object of type obo:TERM with id GO:0010613
* Created object of type obo:TERM with id GO:0010614
* Created object of type obo:TERM with id GO:0010615
* Created object of type obo:TERM with id GO:0010616
* Created object of type obo:TERM with id GO:0010617
* Created object of type obo:TERM with id GO:0010618
* Created object of type obo:TERM with id GO:0034504
* Populated new object GO:0010611 (macro)
  * Changed name of GO:0010611 from "<new term>" to "regulation of cardiac muscle hypertrophy"
  * Set definition of GO:0010611 to "Any process that modulates the rate, frequency or extent of the enlargement or overgrowth of all or part of the heart due to an increase in size (not length) of individual cardiac muscle fibers, without cell division."
  * Added definition dbxref GOC:dph to GO:0010611
  * Added definition dbxref GOC:tb to GO:0010611
  * Copied GO:0010611 to GO:0014898 with type regulates
  * Copied GO:0010611 to GO:0010612 with type OBO_REL:is_a
  * Copied GO:0010611 to GO:0014743 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010611
* Populated new object GO:0010612 (macro)
  * Changed name of GO:0010612 from "<new term>" to "regulation of cardiac muscle adaptation"
  * Set definition of GO:0010612 to "Any process that modulates the rate, extent or frequency of the process by which cardiac muscle adapts, with consequent modifications to structural and/or functional phenotypes, in response to a stimulus. Stimuli include contractile activity, loading conditions, substrate supply, and environmental factors."
  * Added definition dbxref GOC:dph to GO:0010612
  * Added definition dbxref GOC:tb to GO:0010612
  * Copied GO:0010612 to GO:0043502 with type OBO_REL:is_a
  * Copied GO:0010612 to GO:0014887 with type regulates
  * Assigned namespace "biological_process" to GO:0010612
* Populated new object GO:0010613 (macro)
  * Changed name of GO:0010613 from "<new term>" to "positive regulation of cardiac muscle hypertrophy"
  * Set definition of GO:0010613 to "Any process that increases the rate, frequency or extent of the enlargement or overgrowth of all or part of the heart due to an increase in size (not length) of individual cardiac muscle fibers, without cell division."
  * Added definition dbxref GOC:dph to GO:0010613
  * Added definition dbxref GOC:tb to GO:0010613
  * Copied GO:0010613 to GO:0010611 with type OBO_REL:is_a
  * Copied GO:0010613 to GO:0014898 with type positively_regulates
  * Copied GO:0010613 to GO:0014742 with type OBO_REL:is_a
  * Copied GO:0010613 to GO:0010615 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010613
* Populated new object GO:0010614 (macro)
  * Changed name of GO:0010614 from "<new term>" to "negative regulation of cardiac muscle hypertrophy"
  * Set definition of GO:0010614 to "Any process that decreases the rate, frequency or extent of the enlargement or overgrowth of all or part of the heart due to an increase in size (not length) of individual cardiac muscle fibers, without cell division."
  * Added definition dbxref GOC:dph to GO:0010614
  * Added definition dbxref GOC:tb to GO:0010614
  * Copied GO:0010614 to GO:0014898 with type negatively_regulates
  * Copied GO:0010614 to GO:0010616 with type OBO_REL:is_a
  * Copied GO:0010614 to GO:0010611 with type OBO_REL:is_a
  * Copied GO:0010614 to GO:0014741 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010614
* Populated new object GO:0010615 (macro)
  * Changed name of GO:0010615 from "<new term>" to "positive regulation of cardiac muscle adaptation"
  * Set definition of GO:0010615 to "Any process that increases the rate, extent or frequency of the process by which cardiac muscle adapts, with consequent modifications to structural and/or functional phenotypes, in response to a stimulus. Stimuli include contractile activity, loading conditions, substrate supply, and environmental factors."
  * Added definition dbxref GOC:dph to GO:0010615
  * Added definition dbxref GOC:tb to GO:0010615
  * Copied GO:0010615 to GO:0014744 with type OBO_REL:is_a
  * Copied GO:0010615 to GO:0010612 with type OBO_REL:is_a
  * Copied GO:0010615 to GO:0014887 with type positively_regulates
  * Assigned namespace "biological_process" to GO:0010615
* Populated new object GO:0010616 (macro)
  * Changed name of GO:0010616 from "<new term>" to "negative regulation of cardiac muscle adaptation"
  * Set definition of GO:0010616 to "Any process that decreases the rate, extent or frequency of the process by which cardiac muscle adapts, with consequent modifications to structural and/or functional phenotypes, in response to a stimulus. Stimuli include contractile activity, loading conditions, substrate supply, and environmental factors."
  * Added definition dbxref GOC:dph to GO:0010616
  * Added definition dbxref GOC:tb to GO:0010616
  * Copied GO:0010616 to GO:0014745 with type OBO_REL:is_a
  * Copied GO:0010616 to GO:0010612 with type OBO_REL:is_a
  * Copied GO:0010616 to GO:0014887 with type negatively_regulates
  * Assigned namespace "biological_process" to GO:0010616
* Populated new object GO:0010617 (macro)
  * Changed name of GO:0010617 from "<new term>" to "circadian regulation of calcium ion oscillation"
  * Set definition of GO:0010617 to "Any process that modulates the concentration of cytosolic free calcium ion [Ca2+]cyt with a regularity of approximately 24 hours."
  * Added definition dbxref PMID:17982000 to GO:0010617
  * Added synonym " circadian regulation of Ca2+ oscillation" to GO:0010617
  * Added synonym "circadian regulation of [Ca2+]cyt oscillation" to GO:0010617
  * Added synonym "circadian regulation of cytosolic free calcium ion oscillation" to GO:0010617
  * Copied GO:0010617 to GO:0007623 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010617
* Populated new object GO:0010618 (macro)
  * Changed name of GO:0010618 from "<new term>" to "aerenchyma formation"
  * Set definition of GO:0010618 to "The process that gives rise to aerenchyma, parenchyma tissue containing particularly large intercellular spaces of schizogenous or lysigenous origin. This process pertains to the initial formation of a structure from unspecified parts."
  * Added definition dbxref PMID:18055613 to GO:0010618
  * Added definition dbxref PO:0005702 to GO:0010618
  * Copied GO:0010618 to GO:0048646 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010618
* Populated new object GO:0034504 (macro)
  * Changed name of GO:0034504 from "<new term>" to "protein localization in nucleus"
  * Set definition of GO:0034504 to "A process by which a protein is transported to, or maintained in, a location within the nucleus."
  * Added definition dbxref GOC:ecd to GO:0034504
  * Copied GO:0034504 to GO:0033365 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034504
* Added synonym "RNA polymerase I upstream activation factor complex" to GO:0000500
* Changed synonym scope of GO:0000500 from "Related" to "Exact"
* Copied GO:0002764 to GO:0050776 with type OBO_REL:is_a
* Changed definition of GO:0004143 from "Catalysis of the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate." to "Catalysis of the reaction: NTP + 1,2-diacylglycerol = NDP + 1,2-diacylglycerol 3-phosphate."
* Added definition dbxref GOC:elh to GO:0004143
* Changed synonym scope of GO:0004143 from "Exact" to "Narrow"
* Changed synonym scope of GO:0004143 from "Exact" to "Narrow"
* Changed synonym scope of GO:0004143 from "Exact" to "Narrow"
* Copied GO:0007165 to GO:0050794 with type OBO_REL:is_a
* Changed definition of GO:0016592 from "A multiprotein transcriptional mediator complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and is essential for transcription of most protein-coding genes. The Saccharomyces complex contains a core of core complex consists of 16 polypeptides: Srb2, -4, -5, -6, and -7, Med1, -2, -4, -6, -7, and -8, Gal11, Sin4, Rgr1, Rox3, and Pgd1 proteins; mammalian Srb-mediator complexes include homologs of yeast Srb and Med proteins." to "A multiprotein transcriptional mediator complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and is essential for transcription of most protein-coding genes. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Mammalian Srb-mediator complexes include homologs of yeast Srb and Med proteins."
* Added definition dbxref PMID:16168358 to GO:0016592