[Go-diff] GO update 06/23/2008

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.113 by 1.115

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010623
* Populated new object GO:0010623 (macro)
  * Changed name of GO:0010623 from "<new term>" to "developmental programmed cell death"
  * Set definition of GO:0010623 to "The activation of endogenous cellular processes that result in the death of a cell as part of its development."
  * Added definition dbxref GOC:dph to GO:0010623
  * Added definition dbxref GOC:tb to GO:0010623
  * Copied GO:0010623 to GO:0048468 with type part_of
  * Copied GO:0010623 to GO:0012501 with type OBO_REL:is_a
  * Copied GO:0010623 to GO:0048869 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010623
* Added synonym "Rhp51-dependent recombinational repair" to GO:0000724
* Changed synonym scope of GO:0000724 from "Related" to "Narrow"
* Added synonym "bone development" to GO:0001501
* Added general dbxref GOC:tb to synonym bone development of GO:0001501
* Added general dbxref GOC:dph to synonym bone development of GO:0001501
* Changed synonym scope of GO:0001501 from "Related" to "Narrow"
* Changed definition of GO:0001941 from "The maintenance of membrane compostition in a postsynaptic membrane, the specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft)." to "The maintenance of membrane composition in a postsynaptic membrane, the specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft)."
* Changed synonym scope of GO:0004152 from "Exact" to "Narrow"
* Added synonym "(DHO) dehydrogenase activity" to GO:0004152
* Added general dbxref EC:1.3.3.1 to synonym (DHO) dehydrogenase activity of GO:0004152
* Added synonym "DHOdehase activity" to GO:0004152
* Added general dbxref EC:1.3.3.1 to synonym DHOdehase activity of GO:0004152
* Changed synonym scope of GO:0004152 from "Related" to "Exact"
* Added synonym "dihydoorotic acid dehydrogenase activity" to GO:0004152
* Added general dbxref EC:1.3.3.1 to synonym dihydoorotic acid dehydrogenase activity of GO:0004152
* Changed synonym scope of GO:0004152 from "Related" to "Exact"
* Deleted synonym "(DHO) dehydrogenase activity" from GO:0004158
* Deleted synonym "DHOdehase activity" from GO:0004158
* Deleted synonym "dihydoorotic acid dehydrogenase activity" from GO:0004158
* Copied GO:0004158 to GO:0004152 with type OBO_REL:is_a
* Copied GO:0005451 to GO:0015299 with type OBO_REL:is_a
* Deleted GO:0008219 --OBO_REL:is_a--> GO:0048869
* Deleted GO:0008219 --part_of--> GO:0048468
* Copied GO:0008219 to GO:0009987 with type OBO_REL:is_a
* Deleted GO:0010198 --OBO_REL:is_a--> GO:0012501
* Copied GO:0010198 to GO:0010623 with type OBO_REL:is_a
* Deleted GO:0017059 --OBO_REL:is_a--> GO:0044432
* Deleted GO:0017059 --OBO_REL:is_a--> GO:0044425
* Deleted GO:0017059 --part_of--> GO:0005789
* Deleted GO:0031017 --OBO_REL:is_a--> GO:0031016
* Copied GO:0031017 to GO:0048856 with type OBO_REL:is_a
* Copied GO:0031017 to GO:0031016 with type part_of
* Deleted GO:0031018 --OBO_REL:is_a--> GO:0031016
* Copied GO:0031018 to GO:0031016 with type part_of
* Copied GO:0031018 to GO:0048856 with type OBO_REL:is_a
* Changed definition of GO:0032502 from "A biological process whose specific outcome is the progression of an integrated living unit: a cell, tissue, organ, or organism over time from an initial condition to a later condition." to "A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition."
* Deleted GO:0035096 --OBO_REL:is_a--> GO:0012501
* Copied GO:0035096 to GO:0010623 with type OBO_REL:is_a
* Deleted GO:0035234 --OBO_REL:is_a--> GO:0012501
* Copied GO:0035234 to GO:0010623 with type OBO_REL:is_a
* Changed name of GO:0042132 from "fructose-bisphosphatase activity" to "fructose 1,6-bisphosphate 1-phosphatase activity"
* Deleted synonym "fructose 1,6-bisphosphate 1-phosphatase activity" from GO:0042132
* Added synonym "fructose-bisphosphatase activity" to GO:0042132
* Added general dbxref EC:3.1.3.00 to synonym fructose-bisphosphatase activity of GO:0042132
* Changed synonym scope of GO:0042132 from "Related" to "Broad"
* Deleted GO:0043769 --part_of--> GO:0000781
* Deleted GO:0046666 --OBO_REL:is_a--> GO:0012501
* Copied GO:0046666 to GO:0010623 with type OBO_REL:is_a
* Deleted GO:0055045 --OBO_REL:is_a--> GO:0012501
* Copied GO:0055045 to GO:0010623 with type OBO_REL:is_a
* Deleted GO:0055118 --OBO_REL:is_a--> GO:0045932