[Go-diff] GO update 06/27/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Fri Jun 27 21:30:47 PDT 2008 

OBODIFF of gene_ontology_write.obo version 1.118 by 1.122

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010624
* Created object of type obo:TERM with id GO:0010625
* Created object of type obo:TERM with id GO:0010626
* Created object of type obo:TERM with id GO:0010627
* Created object of type obo:TERM with id GO:0034518
* Created object of type obo:TERM with id GO:0034519
* Created object of type obo:TERM with id GO:0034551
* Created object of type obo:TERM with id GO:0034552
* Created object of type obo:TERM with id GO:0034553
* Populated new object GO:0010624 (macro)
  * Changed name of GO:0010624 from "<new term>" to "regulation of Schwann cell proliferation"
  * Set definition of GO:0010624 to "Any process that modulates the frequency or rate of multiplication or reproduction of Schwann cells, resulting in the expansion of their population. Schwann cells are a type of glial cell in the peripheral nervous system."
  * Added definition dbxref GOC:dph to GO:0010624
  * Added definition dbxref GOC:sl to GO:0010624
  * Added definition dbxref GOC:tb to GO:0010624
  * Copied GO:0010624 to GO:0060251 with type OBO_REL:is_a
  * Copied GO:0010624 to GO:0014010 with type regulates
  * Assigned namespace "biological_process" to GO:0010624
* Populated new object GO:0010625 (macro)
  * Changed name of GO:0010625 from "<new term>" to "positive regulation of Schwann cell proliferation"
  * Set definition of GO:0010625 to "Any process that increases the frequency or rate of the multiplication or reproduction of Schwann cells, resulting in the expansion of their population. Schwann cells are a type of glial cell in the peripheral nervous system."
  * Added definition dbxref GOC:dph to GO:0010625
  * Added definition dbxref GOC:sl to GO:0010625
  * Added definition dbxref GOC:tb to GO:0010625
  * Copied GO:0010625 to GO:0010624 with type OBO_REL:is_a
  * Copied GO:0010625 to GO:0014010 with type positively_regulates
  * Copied GO:0010625 to GO:0060252 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010625
* Populated new object GO:0010626 (macro)
  * Changed name of GO:0010626 from "<new term>" to "negative regulation of Schwann cell proliferation"
  * Set definition of GO:0010626 to "Any process that decreases the frequency or extent of the multiplication or reproduction of Schwann cells, resulting in the expansion of their population. Schwann cells are a type of glial cell in the peripheral nervous system."
  * Added definition dbxref GOC:dph to GO:0010626
  * Added definition dbxref GOC:sl to GO:0010626
  * Added definition dbxref GOC:tb to GO:0010626
  * Copied GO:0010626 to GO:0014010 with type negatively_regulates
  * Copied GO:0010626 to GO:0010624 with type OBO_REL:is_a
  * Copied GO:0010626 to GO:0060253 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010626
* Populated new object GO:0010627 (macro)
  * Changed name of GO:0010627 from "<new term>" to "regulation of protein kinase cascade"
  * Set definition of GO:0010627 to "Any process that modulates a series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound."
  * Added definition dbxref GOC:dph to GO:0010627
  * Added definition dbxref GOC:tb to GO:0010627
  * Copied GO:0010627 to GO:0009966 with type OBO_REL:is_a
  * Copied GO:0010627 to GO:0007243 with type regulates
  * Assigned namespace "biological_process" to GO:0010627
* Populated new object GO:0034518 (macro)
  * Changed name of GO:0034518 from "<new term>" to "RNA cap binding complex"
  * Set definition of GO:0034518 to "Any protein complex that binds to a specialized RNA cap structure at any time in the lifetime of the RNA."
  * Added definition dbxref GOC:mah to GO:0034518
  * Copied GO:0034518 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034518
* Populated new object GO:0034519 (macro)
  * Changed name of GO:0034519 from "<new term>" to "cytoplasmic RNA cap binding complex"
  * Set definition of GO:0034519 to "A protein complex found in the cytoplasm that binds the 5' cap structure of an mRNA, and typically consists of the cap-binding protein eIF4E, the adaptor protein eIF4G, and a multi-factor complex comprising eIF1, eIF2, eIF3 and eIF5. This complex mediates recruitment of the 40S subunit to mRNA."
  * Added definition dbxref PMID:16405910 to GO:0034519
  * Copied GO:0034519 to GO:0034518 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034519
* Populated new object GO:0034551 (macro)
  * Changed name of GO:0034551 from "<new term>" to "mitochondrial cytochrome bc(1) complex assembly"
  * Set definition of GO:0034551 to "The aggregation, arrangement and bonding together of a set of components to form the cytochrome bc(1) complex (also known as cytochrome c oxidase), in the mitochondrial inner membrane."
  * Added definition dbxref GOC:df to GO:0034551
  * Copied GO:0034551 to GO:0017062 with type OBO_REL:is_a
  * Copied GO:0034551 to GO:0033108 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034551
* Populated new object GO:0034552 (macro)
  * Changed name of GO:0034552 from "<new term>" to "respiratory chain complex II assembly"
  * Set definition of GO:0034552 to "The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex II."
  * Added definition dbxref GOC:df to GO:0034552
  * Copied GO:0034552 to GO:0043623 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034552
* Populated new object GO:0034553 (macro)
  * Changed name of GO:0034553 from "<new term>" to "mitochondrial respiratory chain complex II assembly"
  * Set definition of GO:0034553 to "The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex II, in the mitochondrial inner membrane."
  * Added definition dbxref GOC:df to GO:0034553
  * Copied GO:0034553 to GO:0034552 with type OBO_REL:is_a
  * Copied GO:0034553 to GO:0033108 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034553
* Changed definition of GO:0002009 from "The process by which the anatomical structures of epithelia are generated and organized. Morphogenesis pertains to the creation of form. An epithelium is a sheet of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube." to "The process by which the anatomical structures of epithelia are generated and organized. Morphogenesis pertains to the creation of form. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube."
* Added definition dbxref GOC:dph to GO:0002009
* Added definition dbxref GOC:tb to GO:0002009
* Changed definition of GO:0002011 from "The process by which the anatomical structures of an epithelial sheet are generated and organized. Morphogenesis pertains to the creation of form." to "The process by which the anatomical structures of an epithelial sheet are generated and organized. Morphogenesis pertains to the creation of form. An epithelial sheet is a flat surface consisting of closely packed epithelial cells."
* Deleted GO:0003954 --OBO_REL:is_a--> GO:0016491
* Deleted GO:0003958 --OBO_REL:is_a--> GO:0016491
* Deleted GO:0003959 --OBO_REL:is_a--> GO:0016491
* Deleted GO:0004128 --OBO_REL:is_a--> GO:0016491
* Deleted GO:0004148 --OBO_REL:is_a--> GO:0016491
* Added comment "Note that this term is distinguished from its parent in that it specifically refers to hydrolysis of thiolester bonds."
* Deleted GO:0004362 --OBO_REL:is_a--> GO:0016491
* Deleted GO:0004783 --OBO_REL:is_a--> GO:0016491
* Deleted GO:0004791 --OBO_REL:is_a--> GO:0016491
* Added comment "Note that this term encompasses hydrolysis of any type of bonds formed between ubiquitin and another molecule."
* Changed name of GO:0005845 from "mRNA cap complex" to "mRNA cap binding complex"
* Changed definition of GO:0005845 from "Any complex that binds to an mRNA cap at any time in the lifetime of the mRNA." to "Any protein complex that binds to an mRNA cap at any time in the lifetime of the mRNA."
* Added synonym "mRNA cap complex" to GO:0005845
* Deleted GO:0005845 --OBO_REL:is_a--> GO:0043234
* Copied GO:0005845 to GO:0034518 with type OBO_REL:is_a
* Added comment "Note that this complex can be found in the cytoplasm as well as the nucleus."
* Changed definition of GO:0005846 from "A conserved heterodimeric protein complex that binds to the 5' terminal cap structure m7G(5')ppp(5')N of nascent eukaryotic RNA polymerase II transcripts such as pre-mRNA and U snRNA." to "A conserved heterodimeric protein complex that binds to the 5' terminal cap structure m7G(5')ppp(5')N of nascent eukaryotic RNA polymerase II transcripts such as pre-mRNA and U snRNA. The consists of proteins known as CBP20 and CBP80, binds to cap structures in the nucleus, and is involved in pre-mRNA splicing, 3'-end formation, and RNA nuclear export."
* Deleted GO:0005846 --OBO_REL:is_a--> GO:0044444
* Deleted GO:0005846 --OBO_REL:is_a--> GO:0043234
* Copied GO:0005846 to GO:0034518 with type OBO_REL:is_a
* Copied GO:0005846 to GO:0044424 with type OBO_REL:is_a
* Changed name of GO:0007021 from "tubulin folding" to "tubulin complex assembly"
* Changed definition of GO:0007021 from "Folding of the microtubule constituent proteins alpha- and beta-tubulin into the native alpha-beta heterodimer." to "The aggregation and bonding together of alpha- and beta-tubulin to form a tubulin heterodimer."
* Added synonym "tubulin assembly" to GO:0007021
* Changed synonym scope of GO:0007021 from "Related" to "Exact"
* Added synonym "tubulin folding" to GO:0007021
* Deleted GO:0007021 --OBO_REL:is_a--> GO:0006457
* Copied GO:0007021 to GO:0043623 with type OBO_REL:is_a
* Deleted GO:0007022 --OBO_REL:is_a--> GO:0007021
* Copied GO:0007022 to GO:0006457 with type OBO_REL:is_a
* Deleted GO:0007023 --OBO_REL:is_a--> GO:0007021
* Copied GO:0007023 to GO:0006457 with type OBO_REL:is_a
* Deleted GO:0007024 --OBO_REL:is_a--> GO:0007021
* Copied GO:0007024 to GO:0006457 with type OBO_REL:is_a
* Deleted GO:0007025 --OBO_REL:is_a--> GO:0007021
* Copied GO:0007025 to GO:0006457 with type OBO_REL:is_a
* Deleted GO:0007552 --part_of--> GO:0002165
* Deleted GO:0007552 --OBO_REL:is_a--> GO:0002117
* Copied GO:0007560 to GO:0048707 with type part_of
* Deleted GO:0008937 --OBO_REL:is_a--> GO:0016491
* Deleted GO:0009496 --OBO_REL:is_a--> GO:0016491
* Deleted GO:0014066 --OBO_REL:is_a--> GO:0009966
* Copied GO:0014066 to GO:0010627 with type OBO_REL:is_a
* Deleted GO:0015042 --OBO_REL:is_a--> GO:0016491
* Deleted GO:0015043 --OBO_REL:is_a--> GO:0016491
* Deleted GO:0015046 --OBO_REL:is_a--> GO:0016491
* Deleted GO:0015049 --OBO_REL:is_a--> GO:0016491
* Deleted GO:0030586 --OBO_REL:is_a--> GO:0016491
* Copied GO:0035069 to GO:0048707 with type part_of
* Copied GO:0035070 to GO:0048707 with type part_of
* Deleted GO:0043122 --OBO_REL:is_a--> GO:0009966
* Copied GO:0043122 to GO:0010627 with type OBO_REL:is_a
* Deleted GO:0043408 --OBO_REL:is_a--> GO:0009966
* Copied GO:0043408 to GO:0010627 with type OBO_REL:is_a
* Deleted GO:0045174 --OBO_REL:is_a--> GO:0016491
* Deleted GO:0046425 --OBO_REL:is_a--> GO:0009966
* Copied GO:0046425 to GO:0010627 with type OBO_REL:is_a
* Deleted GO:0051896 --OBO_REL:is_a--> GO:0009966
* Copied GO:0051896 to GO:0010627 with type OBO_REL:is_a

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