[Go-diff] GO update 03/03/2008

Mon Mar 3 21:30:47 PST 2008

OBODIFF of gene_ontology_edit.obo version 5.719 by 5.720

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Changed name of GO:0001659 from "thermoregulation" to "temperature homeostasis"
* Added synonym "thermoregulation" to GO:0001659
* Added general dbxref GOC:tb to synonym thermoregulation of GO:0001659
* Added general dbxref GOC:dph to synonym thermoregulation of GO:0001659
* Changed synonym scope of GO:0001659 from "Related" to "Exact"
* Changed name of GO:0001895 from "retinal homeostasis" to "retina homeostasis"
* Added definition dbxref GOC:dph to GO:0001895
* Added definition dbxref GOC:tb to GO:0001895
* Changed name of GO:0001977 from "renal regulation of blood volume" to "regulation of blood volume by renal system process"
* Added definition dbxref GOC:dph to GO:0001977
* Added definition dbxref GOC:tb to GO:0001977
* Added synonym "renal regulation of blood volume" to GO:0001977
* Added general dbxref GOC:tb to synonym renal regulation of blood volume of GO:0001977
* Added general dbxref GOC:dph to synonym renal regulation of blood volume of GO:0001977
* Copied GO:0001977 to GO:0050878 with type OBO_REL:is_a
* Changed name of GO:0002006 from "vasopressin mediated vasoconstriction involved in systemic arterial blood pressure control" to "vasoconstriction by vasopressin involved in systemic arterial blood pressure control"
* Added definition dbxref GOC:dph to GO:0002006
* Added definition dbxref GOC:tb to GO:0002006
* Added synonym "vasopressin mediated vasoconstriction involved in systemic arterial blood pressure control" to GO:0002006
* Added general dbxref GOC:tb to synonym vasopressin mediated vasoconstriction involved in systemic arterial blood pressure control of GO:0002006
* Added general dbxref GOC:dph to synonym vasopressin mediated vasoconstriction involved in systemic arterial blood pressure control of GO:0002006
* Changed synonym scope of GO:0002006 from "Related" to "Exact"
* Changed name of GO:0002017 from "renal regulation of blood volume by aldosterone" to "regulation of blood volume by renal aldosterone"
* Added synonym "renal regulation of blood volume by aldosterone" to GO:0002017
* Added general dbxref GOC:tb to synonym renal regulation of blood volume by aldosterone of GO:0002017
* Added general dbxref GOC:dph to synonym renal regulation of blood volume by aldosterone of GO:0002017
* Changed synonym scope of GO:0002017 from "Related" to "Exact"
* Copied GO:0002085 to GO:0045596 with type OBO_REL:is_a
* Changed name of GO:0003072 from "renal regulation of systemic arterial blood pressure by control of peripheral vascular resistence" to "regulation of systemic arterial blood pressure by renal control of peripheral vascular resistence"
* Added synonym "renal regulation of systemic arterial blood pressure by control of peripheral vascular resistence" to GO:0003072
* Added general dbxref GOC:tb to synonym renal regulation of systemic arterial blood pressure by control of peripheral vascular resistence of GO:0003072
* Added general dbxref GOC:dph to synonym renal regulation of systemic arterial blood pressure by control of peripheral vascular resistence of GO:0003072
* Changed synonym scope of GO:0003072 from "Related" to "Exact"
* Changed name of GO:0003075 from "renal regulation of systemic arterial blood pressure by vasodilation of the peripheral vascular system" to "regulation of systemic arterial blood pressure by renal vasodilation of the peripheral vascular system"
* Added synonym "renal regulation of systemic arterial blood pressure by vasodilation of the peripheral vascular system" to GO:0003075
* Added general dbxref GOC:tb to synonym renal regulation of systemic arterial blood pressure by vasodilation of the peripheral vascular system of GO:0003075
* Added general dbxref GOC:dph to synonym renal regulation of systemic arterial blood pressure by vasodilation of the peripheral vascular system of GO:0003075
* Changed synonym scope of GO:0003075 from "Related" to "Exact"
* Changed name of GO:0006588 from "tryptophan hydroxylase activation" to "activation of tryptophan 5-monooxygenase activity"
* Changed definition of GO:0006588 from "The process by which the tryptophan hydroxylase enzyme is changed so that is can carry out its enzymatic activity." to "The process by which the tryptophan 5-monooxygenase enzyme is changed so that it can carry out its enzymatic activity."
* Added definition dbxref GOC:tb to GO:0006588
* Added synonym "tryptophan hydroxylase activation" to GO:0006588
* Added general dbxref GOC:tb to synonym tryptophan hydroxylase activation of GO:0006588
* Added general dbxref GOC:dph to synonym tryptophan hydroxylase activation of GO:0006588
* Deleted GO:0006588 --OBO_REL:is_a--> GO:0048554
* Copied GO:0006588 to GO:0032770 with type OBO_REL:is_a
* Changed name of GO:0006933 from "substrate-bound cell migration, cell release from substrate" to "negative regulation of cell adhesion involved in substrate-bound cell migration"
* Added definition dbxref GOC:dph to GO:0006933
* Added definition dbxref GOC:tb to GO:0006933
* Added synonym "substrate-bound cell migration, cell release from substrate" to GO:0006933
* Added general dbxref GOC:tb to synonym substrate-bound cell migration, cell release from substrate of GO:0006933
* Added general dbxref GOC:dph to synonym substrate-bound cell migration, cell release from substrate of GO:0006933
* Changed synonym scope of GO:0006933 from "Related" to "Exact"
* Changed name of GO:0006987 from "unfolded protein response, activation of signaling protein activity" to "activation of signaling protein activity involved in unfolded protein response"
* Added definition dbxref GOC:dph to GO:0006987
* Added definition dbxref GOC:tb to GO:0006987
* Added synonym "unfolded protein response, activation of signaling protein activity" to GO:0006987
* Added general dbxref GOC:tb to synonym unfolded protein response, activation of signaling protein activity of GO:0006987
* Added general dbxref GOC:dph to synonym unfolded protein response, activation of signaling protein activity of GO:0006987
* Changed synonym scope of GO:0006987 from "Related" to "Exact"
* Changed name of GO:0006994 from "sterol depletion response, SREBP target gene transcriptional activation" to "positive regulation of sterol regulatory element binding protein target gene transcription involved in sterol depletion response"
* Added synonym "sterol depletion response, SREBP target gene transcriptional activation" to GO:0006994
* Added general dbxref GOC:mtg_lung to synonym sterol depletion response, SREBP target gene transcriptional activation of GO:0006994
* Added general dbxref GOC:dph to synonym sterol depletion response, SREBP target gene transcriptional activation of GO:0006994
* Changed synonym scope of GO:0006994 from "Related" to "Exact"
* Deleted GO:0006994 --OBO_REL:is_a--> GO:0032569
* Changed name of GO:0007171 from "transmembrane receptor protein tyrosine kinase activation (dimerization)" to "activation of transmembrane receptor protein tyrosine kinase activity"
* Set definition of GO:0007171 to "Any process that initiates the activity of the inactive transmembrane receptor protein tyrosine kinase activity."
* Added definition dbxref GOC:dph to GO:0007171
* Added definition dbxref GOC:tb to GO:0007171
* Added synonym "transmembrane receptor protein tyrosine kinase activation" to GO:0007171
* Added general dbxref GOC:tb to synonym transmembrane receptor protein tyrosine kinase activation of GO:0007171
* Added general dbxref GOC:dph to synonym transmembrane receptor protein tyrosine kinase activation of GO:0007171
* Added synonym "transmembrane receptor protein tyrosine kinase dimerization" to GO:0007171
* Added general dbxref GOC:mtg_lung to synonym transmembrane receptor protein tyrosine kinase dimerization of GO:0007171
* Added general dbxref GOC:dph to synonym transmembrane receptor protein tyrosine kinase dimerization of GO:0007171
* Deleted GO:0007171 --OBO_REL:is_a--> GO:0045860
* Copied GO:0007171 to GO:0032147 with type OBO_REL:is_a
* Changed definition of GO:0008360 from "Any process that modulates the shape of a cell." to "Any process that modulates the surface configuration of a cell."
* Added definition dbxref GOC:dph to GO:0008360
* Added definition dbxref GOC:tb to GO:0008360
* Changed name of GO:0014808 from "release of sequestered calcium ion by sarcoplasmic reticulum into cytosol" to "release of sequestered calcium ion into cytosol by sarcoplasmic reticulum"
* Added synonym "release of sequestered calcium ion by sarcoplasmic reticulum into cytosol" to GO:0014808
* Added general dbxref GOC:tb to synonym release of sequestered calcium ion by sarcoplasmic reticulum into cytosol of GO:0014808
* Added general dbxref GOC:dph to synonym release of sequestered calcium ion by sarcoplasmic reticulum into cytosol of GO:0014808
* Changed name of GO:0014834 from "satellite cell compartment self-renewal involved in skeletal muscle regeneration" to "satellite cell maintenance involved in skeletal muscle regeneration"
* Changed definition of GO:0014834 from "The process essential to mantain a ready source of satellite cells. It consists in the return of activated satellite cells to a quiescent state after proliferation to replenish the satellite cell pool. Satellite cells are quiescent cells that are located between the basal lamina and the plasmalemma of the muscle fibre, which are the main contributors to postnatal muscle growth. In adult muscle, satellite cells become activated to divide and differentiate in response to muscle damage." to "The process essential to mantain a ready source of satellite cells. It consists of the return of activated satellite cells to a quiescent state after proliferation to replenish the satellite cell pool. Satellite cells are quiescent cells that are located between the basal lamina and the plasmalemma of the muscle fibre, which are the main contributors to postnatal muscle growth. In adult muscle, satellite cells become activated to divide and differentiate in response to muscle damage."
* Added definition dbxref GOC:dph to GO:0014834
* Added definition dbxref GOC:tb to GO:0014834
* Added synonym "satellite cell compartment self-renewal involved in skeletal muscle regeneration" to GO:0014834
* Added general dbxref GOC:tb to synonym satellite cell compartment self-renewal involved in skeletal muscle regeneration of GO:0014834
* Added general dbxref GOC:dph to synonym satellite cell compartment self-renewal involved in skeletal muscle regeneration of GO:0014834
* Changed synonym scope of GO:0014834 from "Related" to "Exact"
* Deleted GO:0014834 --OBO_REL:is_a--> GO:0045596
* Copied GO:0014834 to GO:0035019 with type OBO_REL:is_a
* Changed name of GO:0016476 from "shape changes of embryonic cells" to "regulation of embryonic cell shape"
* Set definition of GO:0016476 to "Any process that modulates the surface configuration of an embryonic cell."
* Added definition dbxref GOC:dph to GO:0016476
* Added definition dbxref GOC:tb to GO:0016476
* Added synonym "shape changes of embryonic cells" to GO:0016476
* Added general dbxref GOC:tb to synonym shape changes of embryonic cells of GO:0016476
* Added general dbxref GOC:dph to synonym shape changes of embryonic cells of GO:0016476
* Copied GO:0016476 to GO:0045995 with type OBO_REL:is_a
* Changed name of GO:0021875 from "fibroblast growth factor receptor signaling pathway in forebrain neuroblast division" to "fibroblast growth factor receptor signaling pathway involved in forebrain neuroblast division"
* Changed name of GO:0021907 from "fibroblast growth factor receptor signaling pathway in spinal cord anterior-posterior patterning" to "fibroblast growth factor receptor signaling pathway involved in spinal cord anterior-posterior patterning"
* Changed name of GO:0022002 from "Wnt receptor signaling involved in negative regulation of anterior neural cell fate commitment of the neural plate" to "Wnt receptor signaling pathway involved in negative regulation of anterior neural cell fate commitment of the neural plate"
* Copied GO:0022002 to GO:0016055 with type OBO_REL:is_a
* Changed name of GO:0022003 from "Fgf receptor signaling involved in negative regulation of anterior neural cell fate commitment of the neural plate" to "fibroblast growth factor receptor signaling pathway involved in negative regulation of anterior neural cell fate commitment of the neural plate"
* Copied GO:0022003 to GO:0008543 with type OBO_REL:is_a
* Changed name of GO:0031047 from "RNA-mediated gene silencing" to "gene silencing by RNA"
* Added definition dbxref GOC:dph to GO:0031047
* Added definition dbxref GOC:tb to GO:0031047
* Added synonym "RNA-mediated gene silencing" to GO:0031047
* Added general dbxref GOC:tb to synonym RNA-mediated gene silencing of GO:0031047
* Added general dbxref GOC:dph to synonym RNA-mediated gene silencing of GO:0031047
* Changed synonym scope of GO:0031047 from "Related" to "Exact"
* Changed name of GO:0031048 from "small RNA-mediated chromatin silencing" to "chromatin silencing by small RNA"
* Added definition dbxref GOC:dph to GO:0031048
* Added definition dbxref GOC:mtg_lung to GO:0031048
* Added general dbxref GOC:tb to synonym RNA-mediated chromatin silencing of GO:0031048
* Added general dbxref GOC:dph to synonym RNA-mediated chromatin silencing of GO:0031048
* Changed name of GO:0031556 from "ribosome-mediated transcriptional attenuation" to "transcriptional attenuation by ribosome"
* Added synonym "ribosome-mediated transcriptional " to GO:0031556
* Added general dbxref GOC:tb to synonym ribosome-mediated transcriptional  of GO:0031556
* Added general dbxref GOC:dph to synonym ribosome-mediated transcriptional  of GO:0031556
* Changed synonym scope of GO:0031556 from "Related" to "Exact"
* Changed name of GO:0033562 from "small RNA-mediated cotranscriptional gene silencing" to "cotranscriptional gene silencing by small RNA"
* Added synonym "small RNA-mediated cotranscriptional gene silencing" to GO:0033562
* Added general dbxref GOC:tb to synonym small RNA-mediated cotranscriptional gene silencing of GO:0033562
* Added general dbxref GOC:dph to synonym small RNA-mediated cotranscriptional gene silencing of GO:0033562
* Changed synonym scope of GO:0033562 from "Related" to "Exact"
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"
* Changed name of GO:0035194 from "RNA-mediated posttranscriptional gene silencing" to "posttranscriptional gene silencing by RNA"
* Added synonym "RNA-mediated posttranscriptional gene silencing" to GO:0035194
* Added general dbxref GOC:tb to synonym RNA-mediated posttranscriptional gene silencing of GO:0035194
* Added general dbxref GOC:dph to synonym RNA-mediated posttranscriptional gene silencing of GO:0035194
* Changed synonym scope of GO:0035194 from "Related" to "Exact"
* Changed name of GO:0035195 from "miRNA-mediated gene silencing" to "gene silencing by miRNA"
* Added synonym "miRNA-mediated gene silencing" to GO:0035195
* Added general dbxref GOC:tb to synonym miRNA-mediated gene silencing of GO:0035195
* Added general dbxref GOC:dph to synonym miRNA-mediated gene silencing of GO:0035195
* Changed synonym scope of GO:0035195 from "Related" to "Exact"
* Changed name of GO:0035196 from "miRNA-mediated gene silencing, production of miRNAs" to "gene silencing by miRNA, production of miRNAs"
* Added definition dbxref GOC:dph to GO:0035196
* Added definition dbxref GOC:tb to GO:0035196
* Added synonym "miRNA-mediated gene silencing, production of miRNAs" to GO:0035196
* Added general dbxref GOC:tb to synonym miRNA-mediated gene silencing, production of miRNAs of GO:0035196
* Added general dbxref GOC:dph to synonym miRNA-mediated gene silencing, production of miRNAs of GO:0035196
* Changed synonym scope of GO:0035196 from "Related" to "Exact"
* Changed name of GO:0035278 from "miRNA-mediated gene silencing, negative regulation of translation" to "gene silencing by miRNA, negative regulation of translation"
* Added synonym "miRNA-mediated gene silencing, negative regulation of translation" to GO:0035278
* Added general dbxref GOC:tb to synonym miRNA-mediated gene silencing, negative regulation of translation of GO:0035278
* Added general dbxref GOC:dph to synonym miRNA-mediated gene silencing, negative regulation of translation of GO:0035278
* Changed name of GO:0035279 from "miRNA-mediated gene silencing, mRNA cleavage" to "gene silencing by miRNA, mRNA cleavage"
* Added definition dbxref GOC:dph to GO:0035279
* Added definition dbxref GOC:mtg_lung to GO:0035279
* Added synonym "miRNA-mediated gene silencing, mRNA cleavage" to GO:0035279
* Added general dbxref GOC:tb to synonym miRNA-mediated gene silencing, mRNA cleavage of GO:0035279
* Added general dbxref GOC:dph to synonym miRNA-mediated gene silencing, mRNA cleavage of GO:0035279
* Changed synonym scope of GO:0035279 from "Related" to "Exact"
* Changed name of GO:0035280 from "miRNA-mediated gene silencing, miRNA loading onto RISC" to "gene silencing by miRNA, miRNA loading onto RISC"
* Added synonym "miRNA-mediated gene silencing, miRNA loading onto RISC" to GO:0035280
* Added general dbxref GOC:tb to synonym miRNA-mediated gene silencing, miRNA loading onto RISC of GO:0035280
* Added general dbxref GOC:dph to synonym miRNA-mediated gene silencing, miRNA loading onto RISC of GO:0035280
* Changed synonym scope of GO:0035280 from "Related" to "Exact"
* Changed name of GO:0048876 from "retinal chemical homeostasis" to "chemical homeostasis within retina"
* Changed name of GO:0048877 from "homeostasis of number of retinal cells" to "homeostasis of number of retina cells"
* Added definition dbxref GOC:dph to GO:0048877
* Added definition dbxref GOC:tb to GO:0048877
* Added definition dbxref GOC:dph to GO:0051209
* Added definition dbxref GOC:mtg_lung to GO:0051209
* Changed definition of GO:0051606 from "The series of events in which a stimulus is received by a cell and converted into a molecular signal." to "The series of events in which a stimulus is received by a cell or organism and converted into a molecular signal."
* Added definition dbxref GOC:add to GO:0051606
* Added definition dbxref GOC:dph to GO:0051606
* Added definition dbxref GOC:mah to GO:0051606
* Deleted GO:0051606 --OBO_REL:is_a--> GO:0009987
* Changed name of GO:0060086 from "circadian thermoregulation" to "circadian temperature homeostasis"
* Added definition dbxref GOC:tb to GO:0060086
* Added synonym "circadian thermoregulation" to GO:0060086
* Added general dbxref GOC:tb to synonym circadian thermoregulation of GO:0060086
* Added general dbxref GOC:dph to synonym circadian thermoregulation of GO:0060086
* Changed synonym scope of GO:0060086 from "Related" to "Exact"