[Go-diff] GO update 03/05/2008

Wed Mar 5 21:30:44 PST 2008

OBODIFF of gene_ontology_edit.obo version 5.720 by 5.723

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010556
* Created object of type obo:TERM with id GO:0010557
* Created object of type obo:TERM with id GO:0010558
* Created object of type obo:TERM with id GO:0010559
* Created object of type obo:TERM with id GO:0010560
* Created object of type obo:TERM with id GO:0010561
* Populated new object GO:0010556 (macro)
  * Changed name of GO:0010556 from "<new term>" to "regulation of macromolecule biosynthetic process"
  * Set definition of GO:0010556 to "Any process that modulates the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass."
  * Added definition dbxref GOC:dph to GO:0010556
  * Added definition dbxref GOC:tb to GO:0010556
  * Copied GO:0010556 to GO:0009059 with type part_of
  * Copied GO:0010556 to GO:0009889 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010556
* Populated new object GO:0010557 (macro)
  * Changed name of GO:0010557 from "<new term>" to "positive regulation of macromolecule biosynthetic process"
  * Set definition of GO:0010557 to "Any process that increases the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass."
  * Added definition dbxref GOC:dph to GO:0010557
  * Added definition dbxref GOC:tb to GO:0010557
  * Copied GO:0010557 to GO:0009891 with type OBO_REL:is_a
  * Copied GO:0010557 to GO:0010556 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010557
* Populated new object GO:0010558 (macro)
  * Changed name of GO:0010558 from "<new term>" to "negative regulation of macromolecule biosynthetic process"
  * Set definition of GO:0010558 to "Any process that decreases the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass."
  * Added definition dbxref GOC:dph to GO:0010558
  * Added definition dbxref GOC:tb to GO:0010558
  * Copied GO:0010558 to GO:0010556 with type OBO_REL:is_a
  * Copied GO:0010558 to GO:0009890 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010558
* Populated new object GO:0010559 (macro)
  * Changed name of GO:0010559 from "<new term>" to "regulation of glycoprotein biosynthetic process"
  * Set definition of GO:0010559 to "Any process that modulates the rate, frequency, or extent of the chemical reactions and pathways resulting in the formation of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide."
  * Added definition dbxref GOC:dph to GO:0010559
  * Added definition dbxref GOC:tb to GO:0010559
  * Copied GO:0010559 to GO:0010556 with type OBO_REL:is_a
  * Copied GO:0010559 to GO:0009101 with type part_of
  * Assigned namespace "biological_process" to GO:0010559
* Populated new object GO:0010560 (macro)
  * Changed name of GO:0010560 from "<new term>" to "positive regulation of glycoprotein biosynthetic process"
  * Set definition of GO:0010560 to "Any process that increases the rate, frequency, or extent of the chemical reactions and pathways resulting in the formation of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide."
  * Added definition dbxref GOC:dph to GO:0010560
  * Added definition dbxref GOC:tb to GO:0010560
  * Copied GO:0010560 to GO:0010557 with type OBO_REL:is_a
  * Copied GO:0010560 to GO:0010559 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010560
* Populated new object GO:0010561 (macro)
  * Changed name of GO:0010561 from "<new term>" to "negative regulation of glycoprotein biosynthetic process"
  * Set definition of GO:0010561 to "Any process that decreases the rate, frequency, or extent of the chemical reactions and pathways resulting in the formation of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide."
  * Added definition dbxref GOC:dph to GO:0010561
  * Added definition dbxref GOC:tb to GO:0010561
  * Copied GO:0010561 to GO:0010558 with type OBO_REL:is_a
  * Copied GO:0010561 to GO:0010559 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010561
* Deleted GO:0002640 --OBO_REL:is_a--> GO:0006417
* Copied GO:0002640 to GO:0010556 with type OBO_REL:is_a
* Deleted GO:0002641 --OBO_REL:is_a--> GO:0017148
* Copied GO:0002641 to GO:0010558 with type OBO_REL:is_a
* Deleted GO:0002642 --OBO_REL:is_a--> GO:0045727
* Copied GO:0002642 to GO:0010557 with type OBO_REL:is_a
* Copied GO:0006417 to GO:0010556 with type OBO_REL:is_a
* Deleted GO:0014062 --OBO_REL:is_a--> GO:0046928
* Copied GO:0014062 to GO:0051046 with type OBO_REL:is_a
* Deleted GO:0014063 --OBO_REL:is_a--> GO:0046929
* Copied GO:0014063 to GO:0051048 with type OBO_REL:is_a
* Deleted GO:0014064 --OBO_REL:is_a--> GO:0001956
* Copied GO:0014064 to GO:0051047 with type OBO_REL:is_a
* Copied GO:0017148 to GO:0010558 with type OBO_REL:is_a
* Deleted GO:0032803 --OBO_REL:is_a--> GO:0006417
* Copied GO:0032803 to GO:0031329 with type OBO_REL:is_a
* Copied GO:0032964 to GO:0006412 with type OBO_REL:is_a
* Changed synonym scope of GO:0033920 from "Broad" to "Exact"
* Deleted GO:0042035 --OBO_REL:is_a--> GO:0006417
* Copied GO:0042035 to GO:0010556 with type OBO_REL:is_a
* Deleted GO:0042036 --OBO_REL:is_a--> GO:0017148
* Copied GO:0042036 to GO:0010558 with type OBO_REL:is_a
* Deleted GO:0042108 --OBO_REL:is_a--> GO:0045727
* Copied GO:0042108 to GO:0010557 with type OBO_REL:is_a
* Deleted GO:0042984 --OBO_REL:is_a--> GO:0006417
* Copied GO:0042984 to GO:0010559 with type OBO_REL:is_a
* Copied GO:0042985 to GO:0010561 with type OBO_REL:is_a
* Copied GO:0042986 to GO:0010560 with type OBO_REL:is_a
* Deleted GO:0045113 --OBO_REL:is_a--> GO:0006417
* Copied GO:0045113 to GO:0010556 with type OBO_REL:is_a
* Deleted GO:0045219 --OBO_REL:is_a--> GO:0006417
* Copied GO:0045219 to GO:0010559 with type OBO_REL:is_a
* Copied GO:0045220 to GO:0010560 with type OBO_REL:is_a
* Copied GO:0045221 to GO:0010561 with type OBO_REL:is_a
* Deleted GO:0045223 --OBO_REL:is_a--> GO:0006417
* Copied GO:0045223 to GO:0010559 with type OBO_REL:is_a
* Copied GO:0045224 to GO:0010560 with type OBO_REL:is_a
* Copied GO:0045225 to GO:0010561 with type OBO_REL:is_a
* Deleted GO:0045343 --OBO_REL:is_a--> GO:0006417
* Copied GO:0045343 to GO:0010556 with type OBO_REL:is_a
* Deleted GO:0045344 --OBO_REL:is_a--> GO:0017148
* Copied GO:0045344 to GO:0010558 with type OBO_REL:is_a
* Deleted GO:0045345 --OBO_REL:is_a--> GO:0045727
* Copied GO:0045345 to GO:0010557 with type OBO_REL:is_a
* Deleted GO:0045346 --OBO_REL:is_a--> GO:0006417
* Copied GO:0045346 to GO:0010556 with type OBO_REL:is_a
* Deleted GO:0045347 --OBO_REL:is_a--> GO:0017148
* Copied GO:0045347 to GO:0010558 with type OBO_REL:is_a
* Deleted GO:0045348 --OBO_REL:is_a--> GO:0045727
* Copied GO:0045348 to GO:0010557 with type OBO_REL:is_a
* Deleted GO:0045560 --OBO_REL:is_a--> GO:0006417
* Copied GO:0045560 to GO:0010556 with type OBO_REL:is_a
* Deleted GO:0045563 --OBO_REL:is_a--> GO:0017148
* Copied GO:0045563 to GO:0010558 with type OBO_REL:is_a
* Deleted GO:0045564 --OBO_REL:is_a--> GO:0045727
* Copied GO:0045564 to GO:0010557 with type OBO_REL:is_a
* Deleted GO:0045720 --OBO_REL:is_a--> GO:0017148
* Copied GO:0045720 to GO:0010558 with type OBO_REL:is_a
* Deleted GO:0045726 --OBO_REL:is_a--> GO:0045727
* Copied GO:0045726 to GO:0010557 with type OBO_REL:is_a
* Copied GO:0045727 to GO:0010557 with type OBO_REL:is_a
* Deleted GO:0046984 --OBO_REL:is_a--> GO:0006417
* Copied GO:0046984 to GO:0010556 with type OBO_REL:is_a
* Deleted GO:0046985 --OBO_REL:is_a--> GO:0045727
* Copied GO:0046985 to GO:0010557 with type OBO_REL:is_a
* Deleted GO:0046986 --OBO_REL:is_a--> GO:0017148
* Copied GO:0046986 to GO:0010558 with type OBO_REL:is_a
* Deleted GO:0050758 --OBO_REL:is_a--> GO:0006417
* Copied GO:0050758 to GO:0010556 with type OBO_REL:is_a
* Deleted GO:0050759 --OBO_REL:is_a--> GO:0045727
* Copied GO:0050759 to GO:0010557 with type OBO_REL:is_a
* Deleted GO:0050760 --OBO_REL:is_a--> GO:0017148
* Copied GO:0050760 to GO:0010558 with type OBO_REL:is_a
* Deleted GO:0051543 --OBO_REL:is_a--> GO:0006417
* Copied GO:0051543 to GO:0010559 with type OBO_REL:is_a
* Copied GO:0051544 to GO:0010560 with type OBO_REL:is_a
* Copied GO:0051545 to GO:0010561 with type OBO_REL:is_a
* Deleted GO:0051769 --OBO_REL:is_a--> GO:0006417
* Copied GO:0051769 to GO:0010556 with type OBO_REL:is_a
* Deleted GO:0051770 --OBO_REL:is_a--> GO:0045727
* Copied GO:0051770 to GO:0010557 with type OBO_REL:is_a
* Deleted GO:0051771 --OBO_REL:is_a--> GO:0017148
* Copied GO:0051771 to GO:0010558 with type OBO_REL:is_a
* Deleted GO:0051772 --OBO_REL:is_a--> GO:0006417
* Copied GO:0051772 to GO:0010556 with type OBO_REL:is_a
* Deleted GO:0051773 --OBO_REL:is_a--> GO:0045727
* Copied GO:0051773 to GO:0010557 with type OBO_REL:is_a
* Deleted GO:0051774 --OBO_REL:is_a--> GO:0017148
* Copied GO:0051774 to GO:0010558 with type OBO_REL:is_a