[Go-diff] GO update 05/02/2008

Fri May 2 21:30:45 PDT 2008

OBODIFF of gene_ontology_write.obo version 1.50 by 1.53

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034424
* Created object of type obo:TERM with id GO:0034425
* Created object of type obo:TERM with id GO:0034426
* Populated new object GO:0034424 (macro)
  * Changed name of GO:0034424 from "<new term>" to "Vps55/Vps68 complex"
  * Set definition of GO:0034424 to "A membrane-associated protein complex that is required for a late stage of endosomal transport. In budding yeast, this complex consists of Vps55p and Vps68p proteins."
  * Added definition dbxref PMID:18216282 to GO:0034424
  * Copied GO:0034424 to GO:0005789 with type part_of
  * Copied GO:0034424 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034424
* Populated new object GO:0034425 (macro)
  * Changed name of GO:0034425 from "<new term>" to "etioplast envelope"
  * Set definition of GO:0034425 to "The double lipid bilayer enclosing the etioplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space."
  * Added definition dbxref GOC:mah to GO:0034425
  * Copied GO:0034425 to GO:0009513 with type part_of
  * Copied GO:0034425 to GO:0009526 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034425
* Populated new object GO:0034426 (macro)
  * Changed name of GO:0034426 from "<new term>" to "etioplast membrane"
  * Set definition of GO:0034426 to "Either of the lipid bilayers that surround a etioplast and form the etioplast envelope."
  * Added definition dbxref GOC:rph to GO:0034426
  * Copied GO:0034426 to GO:0034425 with type part_of
  * Copied GO:0034426 to GO:0042170 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034426
* Changed definition of GO:0003012 from "The biological processes, occurring at the level of a muscle. Muscle tissue is composed of contractile cells or fibers." to "A organ system process carried out at the level of a muscle. Muscle tissue is composed of contractile cells or fibers."
* Changed name of GO:0006985 from "EOR-mediated activation of NF-kappaB" to "positive regulation of NF-kappaB transcription factor activity by ER overload response"
* Added definition dbxref GOC:dph to GO:0006985
* Added definition dbxref GOC:tb to GO:0006985
* Added synonym "EOR-mediated activation of NF-kappaB " to GO:0006985
* Added general dbxref GOC:tb to synonym EOR-mediated activation of NF-kappaB  of GO:0006985
* Added general dbxref GOC:dph to synonym EOR-mediated activation of NF-kappaB  of GO:0006985
* Changed synonym scope of GO:0006985 from "Related" to "Exact"
* Added synonym "positive regulation of NF-kappaB transcription factor activity by EOR" to GO:0006985
* Added general dbxref GOC:tb to synonym positive regulation of NF-kappaB transcription factor activity by EOR of GO:0006985
* Added general dbxref GOC:dph to synonym positive regulation of NF-kappaB transcription factor activity by EOR of GO:0006985
* Changed synonym scope of GO:0006985 from "Related" to "Exact"
* Added definition dbxref GOC:dph to GO:0007559
* Deleted GO:0007559 --part_of--> GO:0002165
* Copied GO:0007559 to GO:0009888 with type part_of
* Copied GO:0008240 to GO:0016806 with type OBO_REL:is_a
* Set definition of GO:0016271 to "A permanent cessation of all vital functions of a tissue."
* Added definition dbxref GOC:dph to GO:0016271
* Changed name of GO:0019988 from "charged-tRNA modification" to "charged-tRNA amino acid modification"
* Added synonym "<new synonym>" to GO:0019988
* Changed synonym scope of GO:0019988 from "Related" to "Exact"
* Added synonym "charged tRNA amino acid modification" to GO:0019988
* Changed synonym scope of GO:0019988 from "Related" to "Exact"
* Added synonym "charged-tRNA modification" to GO:0019988
* Changed name of GO:0030722 from "establishment of oocyte nucleus localization during oocyte axis determination" to "establishment of oocyte nucleus localization involved in oocyte dorsal/ventral axis determination"
* Changed definition of GO:0030722 from "The directed movement of the nucleus to a specific location within the cell during the establishment and maintenance of the axes of the oocyte. In the insect oocyte, for example, the nucleus is repositioned to a dorso-anterior position." to "The directed movement of the nucleus to a specific location within the cell during the establishment and maintenance of the dorsal/ventral axis of the oocyte. In the insect oocyte, for example, the nucleus is repositioned to a dorso-anterior position."
* Added definition dbxref GOC:dph to GO:0030722
* Added definition dbxref GOC:tb to GO:0030722
* Added synonym "establishment of oocyte nucleus localization during oocyte axis determination" to GO:0030722
* Added general dbxref GOC:tb to synonym establishment of oocyte nucleus localization during oocyte axis determination of GO:0030722
* Added general dbxref GOC:dph to synonym establishment of oocyte nucleus localization during oocyte axis determination of GO:0030722
* Changed name of GO:0031522 from "plasma membrane Sec complex" to "cell envelope Sec complex"
* Added synonym "plasma membrane Sec complex" to GO:0031522
* Added synonym "T3SS complex" to GO:0031522
* Changed synonym scope of GO:0031522 from "Related" to "Exact"
* Added synonym "TTSS complex" to GO:0031522
* Changed synonym scope of GO:0031522 from "Related" to "Exact"
* Deleted GO:0031522 --OBO_REL:is_a--> GO:0044459
* Copied GO:0031522 to GO:0044464 with type OBO_REL:is_a
* Changed name of GO:0032088 from "inhibition of NF-kappaB transcription factor" to "negative regulation of NF-kappaB transcription factor activity"
* Added definition dbxref GOC:dph to GO:0032088
* Added definition dbxref GOC:tb to GO:0032088
* Added synonym "inhibition of NF-kappaB transcription factor" to GO:0032088
* Added general dbxref GOC:tb to synonym inhibition of NF-kappaB transcription factor of GO:0032088
* Added general dbxref GOC:dph to synonym inhibition of NF-kappaB transcription factor of GO:0032088
* Changed synonym scope of GO:0032088 from "Related" to "Exact"
* Changed name of GO:0032792 from "inhibition of CREB transcription factor" to "negative regulation of CREB transcription factor activity"
* Added definition dbxref GOC:dph to GO:0032792
* Added definition dbxref GOC:tb to GO:0032792
* Added synonym "inhibition of CREB transcription factor" to GO:0032792
* Added general dbxref GOC:tb to synonym inhibition of CREB transcription factor of GO:0032792
* Added general dbxref GOC:dph to synonym inhibition of CREB transcription factor of GO:0032792
* Changed synonym scope of GO:0032792 from "Related" to "Exact"
* Changed name of GO:0032793 from "activation of CREB transcription factor" to "positive regulation of CREB transcription factor activity"
* Added definition dbxref GOC:dph to GO:0032793
* Added definition dbxref GOC:tb to GO:0032793
* Added synonym "activation of CREB transcription factor" to GO:0032793
* Added general dbxref GOC:tb to synonym activation of CREB transcription factor of GO:0032793
* Added general dbxref GOC:dph to synonym activation of CREB transcription factor of GO:0032793
* Changed synonym scope of GO:0032793 from "Related" to "Exact"
* Deleted GO:0034397 --OBO_REL:is_a--> GO:0032200
* Added definition dbxref GOC:dph to GO:0035069
* Copied GO:0035069 to GO:0007552 with type part_of
* Added definition dbxref GOC:dph to GO:0035070
* Copied GO:0035070 to GO:0007552 with type part_of
* Added synonym "sense-PTGS" to GO:0035194
* Changed name of GO:0042070 from "maintenance of oocyte nucleus localization during oocyte axis determination" to "maintenance of oocyte nucleus location involved in oocyte dorsal/ventral axis determination"
* Added definition dbxref GOC:dph to GO:0042070
* Added definition dbxref GOC:tb to GO:0042070
* Added synonym "maintenance of oocyte nucleus localization during oocyte axis determination" to GO:0042070
* Added general dbxref GOC:tb to synonym maintenance of oocyte nucleus localization during oocyte axis determination of GO:0042070
* Added general dbxref GOC:dph to synonym maintenance of oocyte nucleus localization during oocyte axis determination of GO:0042070
* Changed name of GO:0051092 from "activation of NF-kappaB transcription factor" to "positive regulation of NF-kappaB transcription factor activity"
* Added definition dbxref GOC:dph to GO:0051092
* Added definition dbxref GOC:tb to GO:0051092
* Added synonym "activation of NF-kappaB transcription factor" to GO:0051092
* Added general dbxref GOC:tb to synonym activation of NF-kappaB transcription factor of GO:0051092
* Added general dbxref GOC:dph to synonym activation of NF-kappaB transcription factor of GO:0051092
* Changed synonym scope of GO:0051092 from "Related" to "Exact"
* Changed name of GO:0051663 from "oocyte nucleus localization during oocyte axis determination" to "oocyte nucleus localization involved in oocyte dorsal/ventral axis determination"
* Changed definition of GO:0051663 from "The directed movement of the nucleus to a specific location within a cell during the establishment and maintenance of the axes of the oocyte." to "The directed movement of the nucleus to a specific location within a cell during the establishment and maintenance of the dorsal/ventral axis of the oocyte."
* Added definition dbxref GOC:dph to GO:0051663
* Added definition dbxref GOC:tb to GO:0051663
* Added synonym "oocyte nucleus localization during oocyte axis determination" to GO:0051663
* Added general dbxref GOC:tb to synonym oocyte nucleus localization during oocyte axis determination of GO:0051663
* Added general dbxref GOC:dph to synonym oocyte nucleus localization during oocyte axis determination of GO:0051663