[Go-diff] GO update 05/12/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Mon May 12 21:30:46 PDT 2008 

OBODIFF of gene_ontology_write.obo version 1.61 by 1.63

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034436
* Created object of type obo:TERM with id GO:0034437
* Created object of type obo:TERM with id GO:0034438
* Created object of type obo:TERM with id GO:0034439
* Created object of type obo:TERM with id GO:0034440
* Created object of type obo:TERM with id GO:0034441
* Created object of type obo:TERM with id GO:0034442
* Created object of type obo:TERM with id GO:0034443
* Created object of type obo:TERM with id GO:0034444
* Created object of type obo:TERM with id GO:0034445
* Populated new object GO:0034436 (macro)
  * Changed name of GO:0034436 from "<new term>" to "glycoprotein transport"
  * Set definition of GO:0034436 to "The directed movement of a glycoprotein, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid, into, out of, within or between cells."
  * Added definition dbxref GOC:mah to GO:0034436
  * Added definition dbxref GOC:rl to GO:0034436
  * Copied GO:0034436 to GO:0015031 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034436
* Populated new object GO:0034437 (macro)
  * Changed name of GO:0034437 from "<new term>" to "glycoprotein transporter activity"
  * Set definition of GO:0034437 to "Enables the directed movement of a glycoprotein, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid, into, out of, within or between cells."
  * Added definition dbxref GOC:mah to GO:0034437
  * Added definition dbxref GOC:rl to GO:0034437
  * Copied GO:0034437 to GO:0008565 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034437
* Populated new object GO:0034438 (macro)
  * Changed name of GO:0034438 from "<new term>" to "lipoprotein amino acid oxidation"
  * Set definition of GO:0034438 to "The modification of a lipoprotein by oxidation of one or more amino acids in the protein."
  * Added definition dbxref GOC:mah to GO:0034438
  * Added GO:0034438 to category gosubset_prok
  * Copied GO:0034438 to GO:0018158 with type OBO_REL:is_a
  * Copied GO:0034438 to GO:0042161 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034438
* Populated new object GO:0034439 (macro)
  * Changed name of GO:0034439 from "<new term>" to "lipoprotein lipid oxidation"
  * Set definition of GO:0034439 to "The modification of a lipoprotein by oxidation of the lipid moiety."
  * Added definition dbxref GOC:mah to GO:0034439
  * Added GO:0034439 to category gosubset_prok
  * Copied GO:0034439 to GO:0042161 with type OBO_REL:is_a
  * Copied GO:0034439 to GO:0034440 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034439
* Populated new object GO:0034440 (macro)
  * Changed name of GO:0034440 from "<new term>" to "lipid oxidation"
  * Set definition of GO:0034440 to "The removal of one or more electrons from a lipid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen."
  * Added definition dbxref GOC:mah to GO:0034440
  * Copied GO:0034440 to GO:0030258 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034440
* Populated new object GO:0034441 (macro)
  * Changed name of GO:0034441 from "<new term>" to "plasma lipoprotein oxidation"
  * Set definition of GO:0034441 to "The modification of a lipoprotein by oxidation of one or more amino acids or the lipid moiety, occurring in the blood plasma."
  * Added definition dbxref GOC:mah to GO:0034441
  * Copied GO:0034441 to GO:0042161 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034441
* Populated new object GO:0034442 (macro)
  * Changed name of GO:0034442 from "<new term>" to "regulation of lipoprotein oxidation"
  * Set definition of GO:0034442 to "Any process that modulates the frequency, rate or extent of lipoprotein oxidation."
  * Added definition dbxref GOC:mah to GO:0034442
  * Copied GO:0034442 to GO:0042161 with type regulates
  * Copied GO:0034442 to GO:0050746 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034442
* Populated new object GO:0034443 (macro)
  * Changed name of GO:0034443 from "<new term>" to "negative regulation of lipoprotein oxidation"
  * Set definition of GO:0034443 to "Any process that stops, prevents, or reduces the frequency, rate or extent of lipoprotein oxidation."
  * Added definition dbxref GOC:mah to GO:0034443
  * Added synonym "inhibition of lipoprotein oxidation" to GO:0034443
  * Changed synonym scope of GO:0034443 from "Related" to "Narrow"
  * Copied GO:0034443 to GO:0050748 with type OBO_REL:is_a
  * Copied GO:0034443 to GO:0034442 with type OBO_REL:is_a
  * Copied GO:0034443 to GO:0042161 with type negatively_regulates
  * Assigned namespace "biological_process" to GO:0034443
* Populated new object GO:0034444 (macro)
  * Changed name of GO:0034444 from "<new term>" to "regulation of plasma lipoprotein oxidation"
  * Set definition of GO:0034444 to "Any process that modulates the frequency, rate or extent of lipoprotein oxidation, occurring in the blood plasma."
  * Added definition dbxref GOC:mah to GO:0034444
  * Copied GO:0034444 to GO:0034441 with type regulates
  * Copied GO:0034444 to GO:0034442 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034444
* Populated new object GO:0034445 (macro)
  * Changed name of GO:0034445 from "<new term>" to "negative regulation of plasma lipoprotein oxidation"
  * Set definition of GO:0034445 to "Any process that stops, prevents, or reduces the frequency, rate or extent of lipoprotein oxidation, occurring in the blood plasma."
  * Added definition dbxref GOC:mah to GO:0034445
  * Added synonym "inhibition of plasma lipoprotein oxidation" to GO:0034445
  * Changed synonym scope of GO:0034445 from "Related" to "Narrow"
  * Copied GO:0034445 to GO:0034444 with type OBO_REL:is_a
  * Copied GO:0034445 to GO:0034443 with type OBO_REL:is_a
  * Copied GO:0034445 to GO:0034441 with type negatively_regulates
  * Assigned namespace "biological_process" to GO:0034445
* Deleted GO:0000139 --OBO_REL:is_a--> GO:0044425
* Copied GO:0002084 to GO:0006464 with type OBO_REL:is_a
* Changed name of GO:0006621 from "protein retention in ER" to "protein retention in ER lumen"
* Copied GO:0007269 to GO:0006836 with type OBO_REL:is_a
* Copied GO:0009306 to GO:0015031 with type OBO_REL:is_a
* Deleted GO:0012505 --OBO_REL:is_a--> GO:0016020
* Copied GO:0012505 to GO:0044464 with type OBO_REL:is_a
* Deleted GO:0012506 --OBO_REL:is_a--> GO:0044425
* Set definition of GO:0015035 to "Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds."
* Added definition dbxref MetaCyc:DISULFOXRED-RXN- to GO:0015035
* Added general dbxref MetaCyc:DISULFOXRED-RXN to GO:0015035
* Set definition of GO:0015036 to "Catalysis of an oxidation-reduction (redox) reaction that interconverts reduced sulfide groups and oxidized disulfide bonds in a substrate."
* Added definition dbxref GOC:mah to GO:0015036
* Added definition dbxref MetaCyc:DISULFOXRED-RXN to GO:0015036
* Deleted GO:0015036 --OBO_REL:is_a--> GO:0016491
* Copied GO:0015036 to GO:0016667 with type OBO_REL:is_a
* Set definition of GO:0015037 to "Catalysis of the reaction: a peptide with reduced sulfide groups = a peptide with oxidized disulfide bonds."
* Added definition dbxref GOC:mah to GO:0015037
* Added definition dbxref MetaCyc:DISULFOXRED-RXN- to GO:0015037
* Set definition of GO:0015038 to "Catalysis of the reaction: 2 glutathione + electron acceptor = glutathione disulfide + electron donor."
* Added definition dbxref GOC:mah to GO:0015038
* Copied GO:0019395 to GO:0034440 with type OBO_REL:is_a
* Deleted GO:0019867 --OBO_REL:is_a--> GO:0044425
* Copied GO:0019867 to GO:0016020 with type OBO_REL:is_a
* Copied GO:0032940 to GO:0006810 with type OBO_REL:is_a
* Deleted GO:0042157 --OBO_REL:is_a--> GO:0044267
* Copied GO:0042157 to GO:0044260 with type OBO_REL:is_a
* Set definition of GO:0042161 to "The modification of a lipoprotein by oxidation of one or more amino acids or the lipid moiety."
* Added definition dbxref GOC:mah to GO:0042161
* Deleted GO:0042161 --OBO_REL:is_a--> GO:0018158
* Copied GO:0042175 to GO:0016020 with type OBO_REL:is_a
* Changed name of GO:0045053 from "protein retention in Golgi" to "protein retention in Golgi apparatus"
* Copied GO:0045053 to GO:0034067 with type part_of

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