[Go-diff] GO update 05/16/2008

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.65 by 1.68

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0043900
* Created object of type obo:TERM with id GO:0043901
* Created object of type obo:TERM with id GO:0043902
* Created object of type obo:TERM with id GO:0043903
* Created object of type obo:TERM with id GO:0043904
* Created object of type obo:TERM with id GO:0043905
* Created object of type obo:TERM with id GO:0043906
* Created object of type obo:TERM with id GO:0043907
* Created object of type obo:TERM with id GO:0043908
* Populated new object GO:0043900 (macro)
  * Changed name of GO:0043900 from "<new term>" to "regulation of multi-organism process"
  * Set definition of GO:0043900 to "Any process that modulates the frequency, rate or extent of a multi-organism process, a process by which an organism has an effect on another organism of the same or different species."
  * Added definition dbxref GOC:jl to GO:0043900
  * Copied GO:0043900 to GO:0050789 with type OBO_REL:is_a
  * Copied GO:0043900 to GO:0051704 with type regulates
  * Assigned namespace "biological_process" to GO:0043900
* Populated new object GO:0043901 (macro)
  * Changed name of GO:0043901 from "<new term>" to "negative regulation of multi-organism process"
  * Set definition of GO:0043901 to "Any process that stops, prevents or reduces the frequency, rate or extent of a multi-organism process, a process by which an organism has an effect on another organism of the same or different species."
  * Added definition dbxref GOC:jl to GO:0043901
  * Copied GO:0043901 to GO:0051704 with type negatively_regulates
  * Copied GO:0043901 to GO:0048519 with type OBO_REL:is_a
  * Copied GO:0043901 to GO:0043900 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043901
* Populated new object GO:0043902 (macro)
  * Changed name of GO:0043902 from "<new term>" to "positive regulation of multi-organism process"
  * Set definition of GO:0043902 to "Any process that activates or increases the frequency, rate or extent of a multi-organism process, a process by which an organism has an effect on another organism of the same or different species."
  * Added definition dbxref GOC:jl to GO:0043902
  * Copied GO:0043902 to GO:0048518 with type OBO_REL:is_a
  * Copied GO:0043902 to GO:0043900 with type OBO_REL:is_a
  * Copied GO:0043902 to GO:0051704 with type positively_regulates
  * Assigned namespace "biological_process" to GO:0043902
* Populated new object GO:0043903 (macro)
  * Changed name of GO:0043903 from "<new term>" to "regulation of symbiosis, encompassing mutualism through parasitism"
  * Set definition of GO:0043903 to "Any process that modulates the frequency, rate or extent of symbiosis, an interaction between two organisms living together in more or less intimate association."
  * Added definition dbxref GOC:jl to GO:0043903
  * Copied GO:0043903 to GO:0043900 with type OBO_REL:is_a
  * Copied GO:0043903 to GO:0051704 with type regulates
  * Copied GO:0043903 to GO:0044403 with type regulates
  * Assigned namespace "biological_process" to GO:0043903
* Populated new object GO:0043904 (macro)
  * Changed name of GO:0043904 from "<new term>" to "isochorismate pyruvate lyase activity"
  * Set definition of GO:0043904 to "Catalysis of the reaction: isochorismate = salicylate + pyruvate."
  * Added definition dbxref GOC:jl to GO:0043904
  * Added definition dbxref PMID:16248620 to GO:0043904
  * Added general dbxref EC:4.1.3 to GO:0043904
  * Added general dbxref IMG:02661 to GO:0043904
  * Added GO:0043904 to category gosubset_prok
  * Added synonym "IPL" to GO:0043904
  * Changed synonym scope of GO:0043904 from "Related" to "Exact"
  * Added synonym "isochorismate-pyruvate lyase activity" to GO:0043904
  * Changed synonym scope of GO:0043904 from "Related" to "Exact"
  * Copied GO:0043904 to GO:0016833 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043904
* Populated new object GO:0043905 (macro)
  * Changed name of GO:0043905 from "<new term>" to "Ser-tRNA(Thr) hydrolase activity"
  * Set definition of GO:0043905 to "Catalysis of the hydrolysis of misacylated Ser-tRNA(Thr)."
  * Added definition dbxref GOC:jl to GO:0043905
  * Added definition dbxref PMID:15240874 to GO:0043905
  * Added general dbxref EC:3.1.1.- to GO:0043905
  * Added general dbxref IMG:02667 to GO:0043905
  * Added GO:0043905 to category gosubset_prok
  * Added synonym "Ser-tRNAThr hydrolase activity" to GO:0043905
  * Changed synonym scope of GO:0043905 from "Related" to "Exact"
  * Copied GO:0043905 to GO:0004091 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043905
* Populated new object GO:0043906 (macro)
  * Changed name of GO:0043906 from "<new term>" to "Ala-tRNA(Pro) hydrolase activity"
  * Set definition of GO:0043906 to "Catalysis of the hydrolysis of misacylated Ala-tRNA(Pro)."
  * Added definition dbxref GOC:jl to GO:0043906
  * Added definition dbxref PMID:14663147 to GO:0043906
  * Added general dbxref EC:3.1.1.- to GO:0043906
  * Added general dbxref IMG:02668 to GO:0043906
  * Added GO:0043906 to category gosubset_prok
  * Added synonym "Ala-tRNAPro hydrolase activity" to GO:0043906
  * Changed synonym scope of GO:0043906 from "Related" to "Exact"
  * Copied GO:0043906 to GO:0004091 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043906
* Populated new object GO:0043907 (macro)
  * Changed name of GO:0043907 from "<new term>" to "Cys-tRNA(Pro) hydrolase activity"
  * Set definition of GO:0043907 to "Catalysis of the hydrolysis of misacylated Cys-tRNA(Pro)."
  * Added definition dbxref GOC:jl to GO:0043907
  * Added definition dbxref PMID:15886196 to GO:0043907
  * Added general dbxref EC:3.1.1.- to GO:0043907
  * Added general dbxref IMG:02669 to GO:0043907
  * Added GO:0043907 to category gosubset_prok
  * Added synonym "Cys-tRNA(Pro) deacetylase activity" to GO:0043907
  * Changed synonym scope of GO:0043907 from "Related" to "Exact"
  * Added synonym "Cys-tRNAPro hydrolase activity" to GO:0043907
  * Changed synonym scope of GO:0043907 from "Related" to "Exact"
  * Copied GO:0043907 to GO:0004091 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043907
* Populated new object GO:0043908 (macro)
  * Changed name of GO:0043908 from "<new term>" to "Ser(Gly)-tRNA(Ala) hydrolase activity"
  * Set definition of GO:0043908 to "Catalysis of the hydrolysis of misacylated Ser-tRNA(Ala) and Gly-tRNA(Ala)."
  * Added definition dbxref GOC:jl to GO:0043908
  * Added definition dbxref PMID:14663147 to GO:0043908
  * Added general dbxref EC:3.1.1.- to GO:0043908
  * Added general dbxref IMG:02670 to GO:0043908
  * Added GO:0043908 to category gosubset_prok
  * Added synonym "Ser(Gly)-tRNAAla hydrolase activity" to GO:0043908
  * Changed synonym scope of GO:0043908 from "Related" to "Exact"
  * Copied GO:0043908 to GO:0004091 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043908
* Added synonym "insect-type retina morphogenesis" to GO:0001745
* Added general dbxref PMID:11735386 to synonym insect-type retina morphogenesis of GO:0001745
* Changed synonym scope of GO:0001745 from "Related" to "Exact"
* Deleted GO:0033665 --OBO_REL:is_a--> GO:0050789
* Copied GO:0033665 to GO:0043903 with type OBO_REL:is_a
* Deleted general dbxref EC:2.7.1 from GO:0043899
* Added general dbxref EC:2.7.1.- to GO:0043899
* Added synonym "insect-type retina development" to GO:0048749
* Added general dbxref PMID:11735386 to synonym insect-type retina development of GO:0048749
* Changed synonym scope of GO:0048749 from "Related" to "Exact"
* Deleted GO:0052371 --OBO_REL:is_a--> GO:0050789
* Copied GO:0052371 to GO:0043903 with type OBO_REL:is_a