[Go-diff] GO update 05/28/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Wed May 28 21:30:46 PDT 2008 

OBODIFF of gene_ontology_write.obo version 1.71 by 1.75

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010582
* Created object of type obo:TERM with id GO:0010583
* Created object of type obo:TERM with id GO:0010584
* Created object of type obo:TERM with id GO:0010585
* Created object of type obo:TERM with id GO:0010586
* Created object of type obo:TERM with id GO:0010587
* Created object of type obo:TERM with id GO:0010588
* Created object of type obo:TERM with id GO:0010589
* Created object of type obo:TERM with id GO:0010590
* Created object of type obo:TERM with id GO:0010591
* Created object of type obo:TERM with id GO:0010592
* Created object of type obo:TERM with id GO:0010593
* Created object of type obo:TERM with id GO:0034448
* Created object of type obo:TERM with id GO:0034449
* Created object of type obo:TERM with id GO:0034450
* Created object of type obo:TERM with id GO:0034451
* Created object of type obo:TERM with id GO:0034452
* Created object of type obo:TERM with id GO:0034453
* Created object of type obo:TERM with id GO:0034454
* Created object of type obo:TERM with id GO:0034455
* Created object of type obo:TERM with id GO:0034456
* Created object of type obo:TERM with id GO:0034457
* Created object of type obo:TERM with id GO:0034458
* Created object of type obo:TERM with id GO:0034459
* Populated new object GO:0010582 (macro)
  * Changed name of GO:0010582 from "<new term>" to "floral meristem determinacy"
  * Set definition of GO:0010582 to "The process by which a floral meristem becomes determinate (i.e. ceases to produce lateral organs and may or may not terminally differentiate)."
  * Added definition dbxref PMID:18441215 to GO:0010582
  * Copied GO:0010582 to GO:0010022 with type OBO_REL:is_a
  * Copied GO:0010582 to GO:0009908 with type part_of
  * Assigned namespace "biological_process" to GO:0010582
* Populated new object GO:0010583 (macro)
  * Changed name of GO:0010583 from "<new term>" to "response to cyclopentenone"
  * Set definition of GO:0010583 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclopentenone stimulus. Cyclopentenones are oxylipins derived from polyunsaturated fatty acids. They are structurally similar to jasmonic acid, but contain a reactive unsaturated carbonyl structure in the cyclo-ring. Cyclopentenones include phytoprostanes and 12-oxo-phytodienoic acid."
  * Added definition dbxref PMID:18334669 to GO:0010583
  * Copied GO:0010583 to GO:0014070 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010583
* Populated new object GO:0010584 (macro)
  * Changed name of GO:0010584 from "<new term>" to "pollen exine formation"
  * Set definition of GO:0010584 to "The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine."
  * Added definition dbxref GOC:dl to GO:0010584
  * Copied GO:0010584 to GO:0010208 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010584
* Populated new object GO:0010585 (macro)
  * Changed name of GO:0010585 from "<new term>" to "glutamine secretion"
  * Set definition of GO:0010585 to "The regulated release of glutamine by a cell, a group of cells, or a tissue."
  * Added definition dbxref PMID:15208395 to GO:0010585
  * Copied GO:0010585 to GO:0046903 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010585
* Populated new object GO:0010586 (macro)
  * Changed name of GO:0010586 from "<new term>" to "miRNA metabolic process"
  * Set definition of GO:0010586 to "The chemical reactions and pathways involving miRNA, microRNA, a class of single-stranded RNA molecules of about 21-23 nucleotides in length, which regulates gene expression."
  * Added definition dbxref PMID:17993620 to GO:0010586
  * Added synonym "microRNA metabolic process" to GO:0010586
  * Changed synonym scope of GO:0010586 from "Related" to "Exact"
  * Copied GO:0010586 to GO:0016070 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010586
* Populated new object GO:0010587 (macro)
  * Changed name of GO:0010587 from "<new term>" to "miRNA catabolic process"
  * Set definition of GO:0010587 to "The chemical reactions and pathways resulting in the breakdown of miRNA, microRNA, a class of single-stranded RNA molecules of about 21-23 nucleotides in length, which regulates gene expression."
  * Added definition dbxref PMID:17993620 to GO:0010587
  * Added synonym "microRNA catabolic process" to GO:0010587
  * Changed synonym scope of GO:0010587 from "Related" to "Exact"
  * Copied GO:0010587 to GO:0006401 with type OBO_REL:is_a
  * Copied GO:0010587 to GO:0010586 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010587
* Populated new object GO:0010588 (macro)
  * Changed name of GO:0010588 from "<new term>" to "cotyledon vascular tissue pattern formation"
  * Set definition of GO:0010588 to "Vascular tissue pattern formation as it occurs in the cotyledon of vascular plants."
  * Added definition dbxref PMID:10559439 to GO:0010588
  * Copied GO:0010588 to GO:0010051 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010588
* Populated new object GO:0010589 (macro)
  * Changed name of GO:0010589 from "<new term>" to "leaf proximal/distal pattern formation"
  * Set definition of GO:0010589 to "The regionalization process within a leaf by which specific areas of cell differentiation are determined along a proximal/distal axis."
  * Added definition dbxref PMID:18398054 to GO:0010589
  * Copied GO:0010589 to GO:0009954 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010589
* Populated new object GO:0010590 (macro)
  * Changed name of GO:0010590 from "<new term>" to "RNA interference, production of lsiRNA"
  * Set definition of GO:0010590 to "Cleavage of double-stranded RNA to form lsiRNA (long small interfering RNA), a class of siRNAs 30 to 40 nt in length. lsiRNAs are induced by pathogen infection or under specific growth conditions."
  * Added definition dbxref PMID:18003861 to GO:0010590
  * Added synonym "RNA interference, production of long small interfering RNA" to GO:0010590
  * Copied GO:0010590 to GO:0016246 with type part_of
  * Copied GO:0010590 to GO:0031050 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010590
* Populated new object GO:0010591 (macro)
  * Changed name of GO:0010591 from "<new term>" to "regulation of auxin biosynthetic process"
  * Set definition of GO:0010591 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth."
  * Added definition dbxref PMID:18287041 to GO:0010591
  * Copied GO:0010591 to GO:0009851 with type regulates
  * Copied GO:0010591 to GO:0046885 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010591
* Populated new object GO:0010592 (macro)
  * Changed name of GO:0010592 from "<new term>" to "positive regulation of auxin biosynthetic process"
  * Set definition of GO:0010592 to "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth."
  * Added definition dbxref PMID:18287041 to GO:0010592
  * Copied GO:0010592 to GO:0046886 with type OBO_REL:is_a
  * Copied GO:0010592 to GO:0010591 with type OBO_REL:is_a
  * Copied GO:0010592 to GO:0009851 with type positively_regulates
  * Assigned namespace "biological_process" to GO:0010592
* Populated new object GO:0010593 (macro)
  * Changed name of GO:0010593 from "<new term>" to "regulation of 1-aminocyclopropane-1-carboxylate metabolic process"
  * Set definition of GO:0010593 to "Any process that modulates the rate, extent or frequency of the chemical reactions and pathways involving 1-aminocyclopropane-1-carboxylate, the anion of 1-aminocyclopropane-1-carboxylic acid, a natural product found in plant tissues. It is a key intermediate in the biosynthesis of ethylene (ethene), a fruit-ripening hormone in plants."
  * Added definition dbxref PMID:18055613 to GO:0010593
  * Copied GO:0010593 to GO:0018871 with type regulates
  * Copied GO:0010593 to GO:0032350 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010593
* Populated new object GO:0034448 (macro)
  * Changed name of GO:0034448 from "<new term>" to "EGO complex"
  * Set definition of GO:0034448 to "A vacuolar membrane-associated protein complex that is required for activation of microautophagy during exit from rapamycin-induced growth arrest. In budding yeast, S. cerevisiae, this complex includes Meh1p, Gtr2p and Slm4p."
  * Added definition dbxref GOC:rb to GO:0034448
  * Added definition dbxref PMID:15989961 to GO:0034448
  * Copied GO:0034448 to GO:0005774 with type part_of
  * Copied GO:0034448 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034448
* Populated new object GO:0034449 (macro)
  * Changed name of GO:0034449 from "<new term>" to "GSE complex"
  * Set definition of GO:0034449 to "A conserved protein complex required for protein sorting from endosome to the plasma membrane. In budding yeast, S. cerevisiae, this complex includes Gtr1p, Gtr2p, Slm4p, Meh1p and Ltv1p and it sorts Gap1p."
  * Added definition dbxref GOC:rb to GO:0034449
  * Added definition dbxref PMID:15989961 to GO:0034449
  * Added synonym "GTPase-containing complex for Gap1p sorting in the endosome" to GO:0034449
  * Changed synonym scope of GO:0034449 from "Related" to "Exact"
  * Copied GO:0034449 to GO:0005768 with type part_of
  * Copied GO:0034449 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034449
* Populated new object GO:0034450 (macro)
  * Changed name of GO:0034450 from "<new term>" to "ubiquitin-ubiquitin ligase activity"
  * Set definition of GO:0034450 to "Catalysis of the reaction: Catalysis of the reaction: ATP + ubiquitin + protein N-ubiquityl(n)lysine = AMP + diphosphate + protein N-ubiquityl(n+1)lysine, i.e. the ligation of ubiquitin moieties, via isopeptide bonds, to extend the length of the multiubiquitin chain attached to a substrate protein."
  * Added definition dbxref GOC:mah to GO:0034450
  * Added definition dbxref GOC:mcc to GO:0034450
  * Added definition dbxref PMID:10089879 to GO:0034450
  * Added definition dbxref PMID:17190603 to GO:0034450
  * Added synonym "E4" to GO:0034450
  * Changed synonym scope of GO:0034450 from "Related" to "Exact"
  * Copied GO:0034450 to GO:0004842 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034450
* Populated new object GO:0034451 (macro)
  * Changed name of GO:0034451 from "<new term>" to "centriolar satellite"
  * Set definition of GO:0034451 to "A small (70-100 nm) cytoplasmic granule that contains a number of centrosomal proteins; cetriolar satellites traffic toward microtubule minus ends and are enriched near the centrosome."
  * Added definition dbxref PMID:10579718 to GO:0034451
  * Added definition dbxref PMID:12403812 to GO:0034451
  * Copied GO:0034451 to GO:0044450 with type OBO_REL:is_a
  * Copied GO:0034451 to GO:0005813 with type part_of
  * Copied GO:0034451 to GO:0044430 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034451
* Populated new object GO:0034452 (macro)
  * Changed name of GO:0034452 from "<new term>" to "dynactin binding"
  * Set definition of GO:0034452 to "Interacting selectively with any part of a dynactin complex; dynactin is a large protein complex that activates dynein-based motor activity."
  * Added definition dbxref GOC:mah to GO:0034452
  * Copied GO:0034452 to GO:0008092 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034452
* Populated new object GO:0034453 (macro)
  * Changed name of GO:0034453 from "<new term>" to "microtubule anchoring"
  * Set definition of GO:0034453 to "Any process by which a microtubule is maintained in a specific location in a cell."
  * Added definition dbxref GOC:mah to GO:0034453
  * Copied GO:0034453 to GO:0000226 with type OBO_REL:is_a
  * Copied GO:0034453 to GO:0032507 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034453
* Populated new object GO:0034454 (macro)
  * Changed name of GO:0034454 from "<new term>" to "microtubule anchoring at centrosome"
  * Set definition of GO:0034454 to "Any process by which a microtubule is maintained in a specific location in a cell by attachment to a centrosome."
  * Added definition dbxref GOC:mah to GO:0034454
  * Copied GO:0034454 to GO:0034453 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034454
* Populated new object GO:0034455 (macro)
  * Changed name of GO:0034455 from "<new term>" to "t-UTP complex"
  * Added comment "Note that the term name uses Saccharomyces gene product names because no other names have yet arisen for this complex; the term nevertheless can be used for analogous complexes in other eukaryotes, and the name can be changed if better wording is found."
  * Set definition of GO:0034455 to "A protein complex that forms a subcomplex of the 90S preribosome and is required for the subsequent assembly of the rest of the preribosome. In S. cerevisiae, it is composed of Utp5p, Utp4p, Nan1p, Utp8p, Utp9p, Utp10 and Utp15p."
  * Added definition dbxref GOC:mah to GO:0034455
  * Added definition dbxref PMID:17515605 to GO:0034455
  * Added synonym "Nan1p-containing subcomplex of 90S preribosome" to GO:0034455
  * Changed synonym scope of GO:0034455 from "Related" to "Exact"
  * Copied GO:0034455 to GO:0044452 with type OBO_REL:is_a
  * Copied GO:0034455 to GO:0030686 with type part_of
  * Copied GO:0034455 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034455
* Populated new object GO:0034456 (macro)
  * Changed name of GO:0034456 from "<new term>" to "UTP-C complex"
  * Added comment "Note that the term name uses Saccharomyces gene product names because no other names have yet arisen for this complex; the term nevertheless can be used for analogous complexes in other eukaryotes, and the name can be changed if better wording is found."
  * Set definition of GO:0034456 to "A protein complex that forms a subcomplex of the 90S preribosome. In S. cerevisiae, it is composed of Rrp7p, Utp22p, Ckb1p, Cka1p, Ckb2p and Cka2p."
  * Added definition dbxref GOC:mah to GO:0034456
  * Added definition dbxref PMID:17515605 to GO:0034456
  * Added synonym "Rrp7p-containing subcomplex of 90S preribosome" to GO:0034456
  * Changed synonym scope of GO:0034456 from "Related" to "Exact"
  * Copied GO:0034456 to GO:0043234 with type OBO_REL:is_a
  * Copied GO:0034456 to GO:0030686 with type part_of
  * Copied GO:0034456 to GO:0044452 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034456
* Populated new object GO:0034457 (macro)
  * Changed name of GO:0034457 from "<new term>" to "Mpp10 complex"
  * Added comment "Note that the term name uses Saccharomyces gene product names because no other names have yet arisen for this complex; the term nevertheless can be used for analogous complexes in other eukaryotes, and the name can be changed if better wording is found."
  * Set definition of GO:0034457 to "A protein complex that forms a subcomplex of the 90S preribosome. In S. cerevisiae, it is composed of Mpp10p, Imp3p and Imp4p."
  * Added definition dbxref GOC:mah to GO:0034457
  * Added definition dbxref PMID:17515605 to GO:0034457
  * Copied GO:0034457 to GO:0030686 with type part_of
  * Copied GO:0034457 to GO:0044452 with type OBO_REL:is_a
  * Copied GO:0034457 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034457
* Populated new object GO:0034458 (macro)
  * Changed name of GO:0034458 from "<new term>" to "3'-5' RNA helicase activity"
  * Set definition of GO:0034458 to "Catalysis of the unwinding of an RNA helix in the direction 3' to 5'."
  * Added definition dbxref GOC:mah to GO:0034458
  * Added synonym "3' to 5' RNA helicase activity" to GO:0034458
  * Changed synonym scope of GO:0034458 from "Related" to "Exact"
  * Copied GO:0034458 to GO:0003724 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034458
* Populated new object GO:0034459 (macro)
  * Changed name of GO:0034459 from "<new term>" to "ATP-dependent 3'-5' RNA helicase activity"
  * Set definition of GO:0034459 to "Catalysis of the reaction: ATP + H2O = ADP + phosphate, driving the unwinding of an RNA helix in the direction 3' to 5'."
  * Added definition dbxref GOC:jp to GO:0034459
  * Added synonym "ATP-dependent 3' to 5' RNA helicase activity" to GO:0034459
  * Changed synonym scope of GO:0034459 from "Related" to "Exact"
  * Copied GO:0034459 to GO:0004004 with type OBO_REL:is_a
  * Copied GO:0034459 to GO:0034458 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0034459
* added secondary id GO:0000351 to GO:0000244
* added secondary id GO:0000355 to GO:0000244
* Added synonym "assembly of spliceosomal tri-snRNP U4/U6.U5" to GO:0000244
* Changed synonym scope of GO:0000244 from "Related" to "Narrow"
* Added synonym "assembly of spliceosomal tri-snRNP U4atac/U6atac.U5" to GO:0000244
* Changed synonym scope of GO:0000244 from "Related" to "Narrow"
* Added synonym "spliceosomal tri-snRNP U4/U6.U5 assembly" to GO:0000244
* Changed synonym scope of GO:0000244 from "Related" to "Narrow"
* Added synonym "spliceosomal tri-snRNP U4atac/U6atac.U5 assembly" to GO:0000244
* Changed synonym scope of GO:0000244 from "Related" to "Narrow"
* Deleted GO:0000351 --OBO_REL:is_a--> GO:0000244
* Destroyed object GO:0000351
* Deleted GO:0000355 --OBO_REL:is_a--> GO:0000244
* Destroyed object GO:0000355
* Changed definition of GO:0002087 from "The processes pertaining to the functions of the nervous system that are required for the proper control of respiratory gaseous exchange. These processes occur in the respiratory center of the brain in vertebrates." to "A process carried out by the nervous system that is required for the proper control of respiratory gaseous exchange. This process occurs in the respiratory center of the brain in vertebrates."
* Changed definition of GO:0003026 from "Processes that control blood pressure by sensing the amount of stretch occurring in the aortic arch." to "The process that modulates blood pressure by sensing the amount of stretch occurring in the aorta and responding to the input via central nervous system control."
* Changed definition of GO:0003045 from "The intrinsic circulatory processes that modulate the force with which blood travels through the systemic arterial circulatory system." to "The regulation of blood pressure mediated by detection of forces within the circulatory system."
* Changed definition of GO:0003052 from "The processes by which an organism modulates its blood pressure at different values with a regularity of approximately 24 hours." to "Any process by which an organism modulates its blood pressure at different values with a regularity of approximately 24 hours."
* Changed definition of GO:0003053 from "The processes by which an organism modulates its heart rate at different values with a regularity of approximately 24 hours." to "Any process by which an organism modulates its heart rate at different values with a regularity of approximately 24 hours."
* Changed definition of GO:0003054 from "The processes by which the suprachiasmatic nucleus modulates blood pressure at different values with a regularity of approximately 24 hours." to "The process by which the suprachiasmatic nucleus modulates blood pressure at different values with a regularity of approximately 24 hours."
* Changed definition of GO:0003055 from "The processes by which the suprachiasmatic nucleus modulates heart rate at different values with a regularity of approximately 24 hours." to "The process by which the suprachiasmatic nucleus modulates heart rate at different values with a regularity of approximately 24 hours."
* Added comment "This term was made obsolete because it was derived from an EC entry (1.2.1.1) that has since been split into two entries."
* Changed definition of GO:0004327 from "Catalysis of the reaction: formaldehyde + glutathione + NAD+ = S-formylglutathione + NADH + H+." to "OBSOLETE. Catalysis of the reaction: formaldehyde + glutathione + NAD+ = S-formylglutathione + NADH + H+."
* Deleted GO:0004327 --OBO_REL:is_a--> GO:0016620
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 30c6cd
* Changed definition of GO:0004954 from "Combining with a prostanoid, any compound based on or derive4d from the prostanoate structure, to initiate a change in cell activity." to "Combining with a prostanoid, any compound based on or derived from the prostanoate structure, to initiate a change in cell activity."
* Copied GO:0005815 to GO:0044430 with type OBO_REL:is_a
* Added comment "This term was made obsolete because mutagenesis is not a valid biological process in which gene products would normally participate. Rather, mutations arise from DNA replication errors or damage by an extrinsic agent."
* Changed definition of GO:0006280 from "The process by which genetic material undergoes a detectable and heritable structural change. There are three categories of mutation: genome mutations, involving addition or subtraction of one or more whole chromosomes; chromosome mutations, which alter the structure of chromosomes; and gene mutations, where the structure of a gene is altered at the molecular level." to "OBSOLETE. The process by which genetic material undergoes a detectable and heritable structural change. There are three categories of mutation: genome mutations, involving addition or subtraction of one or more whole chromosomes; chromosome mutations, which alter the structure of chromosomes; and gene mutations, where the structure of a gene is altered at the molecular level."
* Deleted GO:0006280 --OBO_REL:is_a--> GO:0006259
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 4bbfe7
* Added synonym "maintenance of protein location in ER lumen" to GO:0006621
* Added general dbxref GOC:tb to synonym maintenance of protein location in ER lumen of GO:0006621
* Added general dbxref GOC:dph to synonym maintenance of protein location in ER lumen of GO:0006621
* Changed synonym scope of GO:0006621 from "Related" to "Broad"
* Copied GO:0006880 to GO:0051651 with type OBO_REL:is_a
* Changed name of GO:0007016 from "cytoskeletal anchoring" to "cytoskeletal anchoring at plasma membrane"
* Copied GO:0007016 to GO:0032507 with type OBO_REL:is_a
* Added comment "This term was made obsolete because "nutrient" is not defined, and does not have a consistent meaning."
* Changed definition of GO:0009935 from "The directed movement of nutrients into a cell or organelle." to "OBSOLETE. The directed movement of nutrients into a cell or organelle."
* Deleted GO:0009935 --OBO_REL:is_a--> GO:0006810
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 1240e3c
* Added comment "This term was made obsolete because it was derived from a UM-BBD enzyme entry that has been deleted, and no other information can be found to suggest that it is a naturally occurring activity."
* Set definition of GO:0018587 to "OBSOLETE (was not defined before being made obsolete)."
* Added definition dbxref GOC:mah to GO:0018587
* Deleted GO:0018587 --OBO_REL:is_a--> GO:0019113
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 22b6f7
* Added comment "This term was made obsolete because it was derived from a UM-BBD enzyme entry that has been deleted, and no other information can be found to suggest that it is a naturally occurring activity."
* Deleted GO:0018704 --OBO_REL:is_a--> GO:0016491
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 11a1546
* Added comment "This term was made obsolete because it was derived from a UM-BBD enzyme entry that has been deleted, and no other information can be found to suggest that it is a naturally occurring activity."
* Set definition of GO:0018779 to "OBSOLETE (was not defined before being made obsolete)."
* Added definition dbxref GOC:mah to GO:0018779
* Deleted GO:0018779 --OBO_REL:is_a--> GO:0019120
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 16ad043
* Changed comment from "Note that the synonyms 'glutaredoxin' and 'thioredoxin' represent gene products that could be annotated using this term." to "This term was made obsolete because it represents a combination of gene product features and involvement in a biological process."
* Changed definition of GO:0030508 from "Functions as an exchange intermediate in thiol-disulfide exchange reactions." to "OBSOLETE. Functions as an exchange intermediate in thiol-disulfide exchange reactions."
* Deleted GO:0030508 --OBO_REL:is_a--> GO:0015036
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 18ee282
* Changed definition of GO:0032065 from "A process which results in the anchoring of a protein or protein complex to the cell cortex." to "A process by which a protein or protein complex is mantained in a specific location in the cell cortex."
* Added comment "This term was made obsolete because "nutrient" is not defined, and does not have a consistent meaning."
* Changed definition of GO:0032524 from "The directed movement of nutrients out of a cell or organelle." to "OBSOLETE. The directed movement of nutrients out of a cell or organelle."
* Deleted GO:0032524 --OBO_REL:is_a--> GO:0006810
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 1b90119
* Added synonym "UTP-B complex" to GO:0034388
* Changed synonym scope of GO:0034388 from "Related" to "Exact"
* Deleted GO:0043181 --OBO_REL:is_a--> GO:0051235
* Copied GO:0043181 to GO:0051651 with type OBO_REL:is_a
* Added synonym "maintenance of protein location in Golgi apparatus" to GO:0045053
* Changed definition of GO:0048024 from "Any process that modulates the frequency, rate or extent of mRNA splicing." to "Any process that modulates the frequency, rate or extent of mRNA splicing via a spliceosomal mechanism."
* Changed definition of GO:0048025 from "Any process that stops, prevents or reduces the rate or extent of mRNA splicing." to "Any process that stops, prevents or reduces the rate or extent of mRNA splicing via a spliceosomal mechanism."
* Changed definition of GO:0048026 from "Any process that activates or increases the rate or extent of mRNA splicing." to "Any process that activates or increases the rate or extent of mRNA splicing via a spliceosomal mechanism."
* Changed definition of GO:0050882 from "The physiological processes associated with the voluntary movement of an organism or a part of an organism." to "The movement of an organism or part of an organism using mechanoreceptors, the nervous system, striated muscle and/or the skeletal system that can be controlled at will."

More information about the Go-diff mailing list