[Go-diff] GO update 05/29/2008
Remote CVS for Gene Ontology
gocvs at genome.stanford.edu
Thu May 29 21:30:45 PDT 2008
OBODIFF of gene_ontology_write.obo version 1.75 by 1.81
Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0034460
* Created object of type obo:TERM with id GO:0034461
* Created object of type obo:TERM with id GO:0034462
* Created object of type obo:TERM with id GO:0034463
* Created object of type obo:TERM with id GO:0034464
* Created object of type obo:TERM with id GO:0034465
* Created object of type obo:TERM with id GO:0034466
* Created object of type obo:TERM with id GO:0034467
* Created object of type obo:TERM with id GO:0034468
* Created object of type obo:TERM with id GO:0034469
* Created object of type obo:TERM with id GO:0034470
* Created object of type obo:TERM with id GO:0034471
* Created object of type obo:TERM with id GO:0034472
* Created object of type obo:TERM with id GO:0034473
* Created object of type obo:TERM with id GO:0034474
* Created object of type obo:TERM with id GO:0034475
* Created object of type obo:TERM with id GO:0034476
* Created object of type obo:TERM with id GO:0034477
* Created object of type obo:TERM with id GO:0034478
* Created object of type obo:TERM with id GO:0034479
* Created object of type obo:TERM with id GO:0034480
* Created object of type obo:TERM with id GO:0060242
* Created object of type obo:TERM with id GO:0060243
* Created object of type obo:TERM with id GO:0060244
* Created object of type obo:TERM with id GO:0060245
* Created object of type obo:TERM with id GO:0060246
* Created object of type obo:TERM with id GO:0060247
* Created object of type obo:TERM with id GO:0060248
* Created object of type obo:TERM with id GO:0060249
* Created object of type obo:TERM with id GO:0060250
* Created object of type obo:TERM with id GO:0060251
* Created object of type obo:TERM with id GO:0060252
* Created object of type obo:TERM with id GO:0060253
* Created object of type obo:TERM with id GO:0060254
* Created object of type obo:TERM with id GO:0060255
* Populated new object GO:0034460 (macro)
* Changed name of GO:0034460 from "<new term>" to "uropod formation"
* Set definition of GO:0034460 to "The assembly of a uropod by rearrangement of the cytoskeleton and overlying membrane."
* Added definition dbxref GOC:mah to GO:0034460
* Copied GO:0034460 to GO:0032796 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034460
* Populated new object GO:0034461 (macro)
* Changed name of GO:0034461 from "<new term>" to "uropod retraction"
* Set definition of GO:0034461 to "The process by which a uropod detaches from the cell substrate and retracts the rear of a migrating cell."
* Added definition dbxref GOC:mah to GO:0034461
* Added definition dbxref PMID:10704379 to GO:0034461
* Copied GO:0034461 to GO:0032796 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034461
* Populated new object GO:0034462 (macro)
* Changed name of GO:0034462 from "<new term>" to "small-subunit processome assembly"
* Set definition of GO:0034462 to "The aggregation, arrangement and bonding together of proteins and RNA molecules to form a small-subunit processome."
* Added definition dbxref GOC:mah to GO:0034462
* Added synonym "small subunit processome assembly" to GO:0034462
* Changed synonym scope of GO:0034462 from "Related" to "Exact"
* Added synonym "SSU processome assembly" to GO:0034462
* Changed synonym scope of GO:0034462 from "Related" to "Exact"
* Copied GO:0034462 to GO:0022618 with type OBO_REL:is_a
* Copied GO:0034462 to GO:0000028 with type part_of
* Assigned namespace "biological_process" to GO:0034462
* Populated new object GO:0034463 (macro)
* Changed name of GO:0034463 from "<new term>" to "90S preribosome assembly"
* Set definition of GO:0034463 to "The aggregation, arrangement and bonding together of proteins and RNA molecules to form a 90S preribosome."
* Added definition dbxref GOC:mah to GO:0034463
* Copied GO:0034463 to GO:0000028 with type part_of
* Copied GO:0034463 to GO:0000027 with type part_of
* Copied GO:0034463 to GO:0022618 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034463
* Populated new object GO:0034464 (macro)
* Changed name of GO:0034464 from "<new term>" to "BBSome"
* Set definition of GO:0034464 to "A protein complex that associates with the primary cilium and is cilium biogenesis; consists of seven conserved proteins: BBS1, BBS2, BBS4, BBS5, BBS7, BBS8
and BBS9."
* Added definition dbxref PMID:17574030 to GO:0034464
* Added synonym "Bardet-Biedl syndrome complex" to GO:0034464
* Changed synonym scope of GO:0034464 from "Related" to "Exact"
* Copied GO:0034464 to GO:0043234 with type OBO_REL:is_a
* Assigned namespace "cellular_component" to GO:0034464
* Populated new object GO:0034465 (macro)
* Changed name of GO:0034465 from "<new term>" to "response to carbon monoxide"
* Set definition of GO:0034465 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbon monoxide (CO) stimulus."
* Added definition dbxref GOC:ecd to GO:0034465
* Copied GO:0034465 to GO:0010035 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034465
* Populated new object GO:0034466 (macro)
* Changed name of GO:0034466 from "<new term>" to "chromaffin granule lumen"
* Set definition of GO:0034466 to "The volume enclosed by the membrane of a chromaffin granule."
* Added definition dbxref GOC:rph to GO:0034466
* Copied GO:0034466 to GO:0042583 with type part_of
* Copied GO:0034466 to GO:0060205 with type OBO_REL:is_a
* Assigned namespace "cellular_component" to GO:0034466
* Populated new object GO:0034467 (macro)
* Changed name of GO:0034467 from "<new term>" to "esterosome lumen"
* Set definition of GO:0034467 to "The volume enclosed by the membrane of an esterosome."
* Added definition dbxref GOC:rph to GO:0034467
* Copied GO:0034467 to GO:0033117 with type part_of
* Copied GO:0034467 to GO:0060205 with type OBO_REL:is_a
* Assigned namespace "cellular_component" to GO:0034467
* Populated new object GO:0034468 (macro)
* Changed name of GO:0034468 from "<new term>" to "glycosome lumen"
* Set definition of GO:0034468 to "The volume enclosed by the membrane of a glycosome."
* Added definition dbxref GOC:rph to GO:0034468
* Copied GO:0034468 to GO:0043233 with type OBO_REL:is_a
* Copied GO:0034468 to GO:0020015 with type part_of
* Assigned namespace "cellular_component" to GO:0034468
* Populated new object GO:0034469 (macro)
* Changed name of GO:0034469 from "<new term>" to "Golgi stack lumen"
* Set definition of GO:0034469 to "The volume enclosed by any of the membranes of the thin, flattened cisternae that form the central portion of the Golgi complex."
* Added definition dbxref GOC:mah to GO:0034469
* Copied GO:0034469 to GO:0005796 with type OBO_REL:is_a
* Copied GO:0034469 to GO:0005795 with type part_of
* Assigned namespace "cellular_component" to GO:0034469
* Populated new object GO:0034470 (macro)
* Changed name of GO:0034470 from "<new term>" to "ncRNA processing"
* Set definition of GO:0034470 to "Any process that results in the conversion of one or more primary non-coding RNA (ncRNA) transcripts into one or more mature ncRNA molecules."
* Added definition dbxref GOC:mah to GO:0034470
* Copied GO:0034470 to GO:0006396 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034470
* Populated new object GO:0034471 (macro)
* Changed name of GO:0034471 from "<new term>" to "ncRNA 5'-end processing"
* Set definition of GO:0034471 to "Any process involved in forming the mature 5' end of a non-coding RNA molecule."
* Added definition dbxref GOC:mah to GO:0034471
* Added synonym "ncRNA 5' end processing" to GO:0034471
* Changed synonym scope of GO:0034471 from "Related" to "Exact"
* Copied GO:0034471 to GO:0034470 with type OBO_REL:is_a
* Copied GO:0034471 to GO:0000966 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034471
* Populated new object GO:0034472 (macro)
* Changed name of GO:0034472 from "<new term>" to "snRNA 3'-end processing"
* Set definition of GO:0034472 to "Any process involved in forming the mature 3' end of an snRNA molecule."
* Added definition dbxref GOC:mah to GO:0034472
* Added synonym "snRNA 3'-end processing" to GO:0034472
* Changed synonym scope of GO:0034472 from "Related" to "Exact"
* Copied GO:0034472 to GO:0043628 with type OBO_REL:is_a
* Copied GO:0034472 to GO:0016180 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034472
* Populated new object GO:0034473 (macro)
* Changed name of GO:0034473 from "<new term>" to "U1 snRNA 3'-end processing"
* Set definition of GO:0034473 to "Any process involved in forming the mature 3' end of a U1 snRNA molecule."
* Added definition dbxref GOC:mah to GO:0034473
* Added synonym "U1 snRNA 3'-end processing" to GO:0034473
* Changed synonym scope of GO:0034473 from "Related" to "Exact"
* Copied GO:0034473 to GO:0034472 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034473
* Populated new object GO:0034474 (macro)
* Changed name of GO:0034474 from "<new term>" to "U2 snRNA 3'-end processing"
* Set definition of GO:0034474 to "Any process involved in forming the mature 3' end of a U2 snRNA molecule."
* Added definition dbxref GOC:mah to GO:0034474
* Added synonym "U2 snRNA 3'-end processing" to GO:0034474
* Changed synonym scope of GO:0034474 from "Related" to "Exact"
* Copied GO:0034474 to GO:0034472 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034474
* Populated new object GO:0034475 (macro)
* Changed name of GO:0034475 from "<new term>" to "U4 snRNA 3'-end processing"
* Set definition of GO:0034475 to "Any process involved in forming the mature 3' end of a U4 snRNA molecule."
* Added definition dbxref GOC:mah to GO:0034475
* Added synonym "U4 snRNA 3'-end processing" to GO:0034475
* Changed synonym scope of GO:0034475 from "Related" to "Exact"
* Copied GO:0034475 to GO:0034472 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034475
* Populated new object GO:0034476 (macro)
* Changed name of GO:0034476 from "<new term>" to "U5 snRNA 3'-end processing"
* Set definition of GO:0034476 to "Any process involved in forming the mature 3' end of a U5 snRNA molecule."
* Added definition dbxref GOC:mah to GO:0034476
* Added synonym "U5 snRNA 3'-end processing" to GO:0034476
* Changed synonym scope of GO:0034476 from "Related" to "Exact"
* Copied GO:0034476 to GO:0034472 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034476
* Populated new object GO:0034477 (macro)
* Changed name of GO:0034477 from "<new term>" to "U6 snRNA 3'-end processing"
* Set definition of GO:0034477 to "Any process involved in forming the mature 3' end of a U6 snRNA molecule."
* Added definition dbxref GOC:mah to GO:0034477
* Added synonym "U6 snRNA 3'-end processing" to GO:0034477
* Changed synonym scope of GO:0034477 from "Related" to "Exact"
* Copied GO:0034477 to GO:0034472 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034477
* Populated new object GO:0034478 (macro)
* Changed name of GO:0034478 from "<new term>" to "phosphatidylglycerol catabolic process"
* Set definition of GO:0034478 to "The chemical reactions and pathways resulting in the breakdown of phosphatidylglycerols, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of glycerol."
* Added definition dbxref GOC:mah to GO:0034478
* Added GO:0034478 to category gosubset_prok
* Added synonym "phosphatidylglycerol breakdown" to GO:0034478
* Changed synonym scope of GO:0034478 from "Related" to "Exact"
* Added synonym "phosphatidylglycerol catabolism" to GO:0034478
* Changed synonym scope of GO:0034478 from "Related" to "Exact"
* Added synonym "phosphatidylglycerol degradation" to GO:0034478
* Changed synonym scope of GO:0034478 from "Related" to "Exact"
* Copied GO:0034478 to GO:0046471 with type OBO_REL:is_a
* Copied GO:0034478 to GO:0046475 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0034478
* Populated new object GO:0034479 (macro)
* Changed name of GO:0034479 from "<new term>" to "phosphatidylglycerol phospholipase C activity"
* Set definition of GO:0034479 to "Catalysis of the reaction: a phosphatidylglycerol + H2O = 1,2-diacylglycerol + glycerol 3-phosphate."
* Added definition dbxref GOC:mah to GO:0034479
* Added definition dbxref PMID:18434318 to GO:0034479
* Copied GO:0034479 to GO:0004629 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0034479
* Populated new object GO:0034480 (macro)
* Changed name of GO:0034480 from "<new term>" to "phosphatidylcholine phospholipase C activity"
* Set definition of GO:0034480 to "Catalysis of the reaction: phosphatidylcholine + H2O = 1,2-diacylglycerol + a choline phosphate."
* Added definition dbxref EC:3.1.4.3 to GO:0034480
* Added definition dbxref GOC:mah to GO:0034480
* Added general dbxref EC:3.1.4.3 to GO:0034480
* Added general dbxref MetaCyc:PHOSPHOLIPASE-C-RXN to GO:0034480
* Added general dbxref Reactome:11457 to GO:0034480
* Added GO:0034480 to category gosubset_prok
* Added synonym "alpha-toxin" to GO:0034480
* Added general dbxref EC:3.1.4.3 to synonym alpha-toxin of GO:0034480
* Changed synonym scope of GO:0034480 from "Related" to "Narrow"
* Added synonym "Clostridium oedematiens beta- and gamma-toxins activity" to GO:0034480
* Added general dbxref EC:3.1.4.3 to synonym Clostridium oedematiens beta- and gamma-toxins activity of GO:0034480
* Changed synonym scope of GO:0034480 from "Related" to "Narrow"
* Added synonym "Clostridium welchii alpha-toxin activity" to GO:0034480
* Added general dbxref EC:3.1.4.3 to synonym Clostridium welchii alpha-toxin activity of GO:0034480
* Changed synonym scope of GO:0034480 from "Related" to "Narrow"
* Added synonym "heat-labile hemolysin" to GO:0034480
* Added general dbxref EC:3.1.4.3 to synonym heat-labile hemolysin of GO:0034480
* Changed synonym scope of GO:0034480 from "Related" to "Narrow"
* Added synonym "lipophosphodiesterase I activity" to GO:0034480
* Added general dbxref EC:3.1.4.3 to synonym lipophosphodiesterase I activity of GO:0034480
* Changed synonym scope of GO:0034480 from "Related" to "Exact"
* Added synonym "phosphatidylcholine cholinephosphohydrolase activity" to GO:0034480
* Added general dbxref EC:3.1.4.3 to synonym phosphatidylcholine cholinephosphohydrolase activity of GO:0034480
* Changed synonym scope of GO:0034480 from "Related" to "Exact"
* Added synonym "phospholipase C, acting on phosphatidylcholine" to GO:0034480
* Changed synonym scope of GO:0034480 from "Related" to "Exact"
* Copied GO:0034480 to GO:0004629 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0034480
* Populated new object GO:0060242 (macro)
* Changed name of GO:0060242 from "<new term>" to "contact inhibition"
* Set definition of GO:0060242 to "The cellular process by which cells stop growing or dividing in response to increased cell density."
* Added definition dbxref GOC:dph to GO:0060242
* Added definition dbxref PMID:17376520 to GO:0060242
* Copied GO:0060242 to GO:0009987 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060242
* Populated new object GO:0060243 (macro)
* Changed name of GO:0060243 from "<new term>" to "negative regulation of cell growth involved in contact inhibition"
* Set definition of GO:0060243 to "The negative regulation of cell growth in response to increased cell density."
* Added definition dbxref GOC:dph to GO:0060243
* Copied GO:0060243 to GO:0030308 with type OBO_REL:is_a
* Copied GO:0060243 to GO:0060242 with type part_of
* Assigned namespace "biological_process" to GO:0060243
* Populated new object GO:0060244 (macro)
* Changed name of GO:0060244 from "<new term>" to "negative regulation of cell proliferation involved in contact inhibition"
* Set definition of GO:0060244 to "Any process that stops, prevents or reduces the rate or extent of cell proliferation in response to cell density."
* Added definition dbxref GOC:dph to GO:0060244
* Copied GO:0060244 to GO:0008285 with type OBO_REL:is_a
* Copied GO:0060244 to GO:0060242 with type part_of
* Assigned namespace "biological_process" to GO:0060244
* Populated new object GO:0060245 (macro)
* Changed name of GO:0060245 from "<new term>" to "detection of cell density"
* Set definition of GO:0060245 to "The series of events in which information about the density of cells in a population is received and converted into a molecular signal."
* Added definition dbxref GOC:dph to GO:0060245
* Copied GO:0060245 to GO:0009595 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060245
* Populated new object GO:0060246 (macro)
* Changed name of GO:0060246 from "<new term>" to "detection of cell density by contact stimulus"
* Set definition of GO:0060246 to "The series of events in which information about the density of cells in a population is received by direct cell-cell contact and is converted into a molecular signal."
* Added definition dbxref GOC:dph to GO:0060246
* Copied GO:0060246 to GO:0060245 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060246
* Populated new object GO:0060247 (macro)
* Changed name of GO:0060247 from "<new term>" to "detection of cell density by secreted molecule"
* Set definition of GO:0060247 to "The series of events in which information about the density of cells in a population is received by the detection of a secreted molecule and is converted into a molecular signal."
* Added definition dbxref GOC:dph to GO:0060247
* Copied GO:0060247 to GO:0060245 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060247
* Populated new object GO:0060248 (macro)
* Changed name of GO:0060248 from "<new term>" to "detection of cell density by contact stimulus involved in contact inhibition"
* Set definition of GO:0060248 to "The series of events in which information about the density of cells in a population is received by direct cell-cell contact and is converted into a molecular signal, resulting in the cessation of cell growth or proliferation."
* Added definition dbxref GOC:dph to GO:0060248
* Copied GO:0060248 to GO:0060242 with type part_of
* Copied GO:0060248 to GO:0060246 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060248
* Populated new object GO:0060249 (macro)
* Changed name of GO:0060249 from "<new term>" to "anatomical structure homeostasis"
* Set definition of GO:0060249 to "A homeostatic process involved in the maintenance of an internal equilibrium within a defined anatomical structure of an organism, including control of cellular proliferation and death and control of metabolic function. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome."
* Added definition dbxref GOC:dph to GO:0060249
* Added synonym "anatomical structure maintenance" to GO:0060249
* Added general dbxref GOC:dph to synonym anatomical structure maintenance of GO:0060249
* Changed synonym scope of GO:0060249 from "Related" to "Exact"
* Copied GO:0060249 to GO:0042592 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060249
* Populated new object GO:0060250 (macro)
* Changed name of GO:0060250 from "<new term>" to "germ-line stem-cell niche maintenance"
* Set definition of GO:0060250 to "A homeostatic process involved in the maintenance of an internal equilibrium within the germ-line stem-cell niche. This includes control of cellular proliferation and death and control of metabolic function that allows the niche to continue to function. A gem-line stem-cell niche is an anatomical structure that regulates how germ-line stem-cells are used and saves them from depletion."
* Added definition dbxref GOC:dph to GO:0060250
* Added synonym "maintenance of germ line stem cell niche" to GO:0060250
* Added general dbxref GOC:dph to synonym maintenance of germ line stem cell niche of GO:0060250
* Changed synonym scope of GO:0060250 from "Related" to "Exact"
* Added synonym "maintenance of germ line stem-cell niche" to GO:0060250
* Added general dbxref GOC:dph to synonym maintenance of germ line stem-cell niche of GO:0060250
* Changed synonym scope of GO:0060250 from "Related" to "Exact"
* Added synonym "maintenance of germ-line stem cell niche" to GO:0060250
* Added general dbxref GOC:dph to synonym maintenance of germ-line stem cell niche of GO:0060250
* Changed synonym scope of GO:0060250 from "Related" to "Exact"
* Added synonym "maintenance of germ-line stem-cell niche" to GO:0060250
* Added general dbxref GOC:dph to synonym maintenance of germ-line stem-cell niche of GO:0060250
* Changed synonym scope of GO:0060250 from "Related" to "Exact"
* Copied GO:0060250 to GO:0060249 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060250
* Populated new object GO:0060251 (macro)
* Changed name of GO:0060251 from "<new term>" to "regulation of glial cell proliferation"
* Set definition of GO:0060251 to "Any process that modulates the frequency, rate or extent of glial cell proliferation."
* Added definition dbxref GOC:dph to GO:0060251
* Added definition dbxref GOC:tb to GO:0060251
* Copied GO:0060251 to GO:0042127 with type OBO_REL:is_a
* Copied GO:0060251 to GO:0014009 with type regulates
* Assigned namespace "biological_process" to GO:0060251
* Populated new object GO:0060252 (macro)
* Changed name of GO:0060252 from "<new term>" to "positive regulation of glial cell proliferation"
* Set definition of GO:0060252 to "Any process that activates or increases the rate or extent of glial cell proliferation."
* Added definition dbxref GOC:dph to GO:0060252
* Added definition dbxref GOC:sl to GO:0060252
* Added definition dbxref GOC:tb to GO:0060252
* Copied GO:0060252 to GO:0008284 with type OBO_REL:is_a
* Copied GO:0060252 to GO:0014009 with type positively_regulates
* Copied GO:0060252 to GO:0060251 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060252
* Populated new object GO:0060253 (macro)
* Changed name of GO:0060253 from "<new term>" to "negative regulation of glial cell proliferation"
* Set definition of GO:0060253 to "Any process that stops or decreases the rate or extent of glial cell proliferation."
* Added definition dbxref GOC:dph to GO:0060253
* Added definition dbxref GOC:sl to GO:0060253
* Added definition dbxref GOC:tb to GO:0060253
* Copied GO:0060253 to GO:0060251 with type OBO_REL:is_a
* Copied GO:0060253 to GO:0014009 with type negatively_regulates
* Copied GO:0060253 to GO:0008285 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060253
* Populated new object GO:0060254 (macro)
* Changed name of GO:0060254 from "<new term>" to "regulation of N-terminal protein palmitoylation"
* Set definition of GO:0060254 to "Any process that modulates the rate frequency or extent of the covalent or non-covalent attachment of a palmitoyl moiety to the N-terminal amino acid residue of a protein."
* Added definition dbxref GOC:dph to GO:0060254
* Added definition dbxref GOC:tb to GO:0060254
* Copied GO:0060254 to GO:0010556 with type OBO_REL:is_a
* Copied GO:0060254 to GO:0050746 with type OBO_REL:is_a
* Copied GO:0060254 to GO:0006500 with type regulates
* Assigned namespace "biological_process" to GO:0060254
* Populated new object GO:0060255 (macro)
* Changed name of GO:0060255 from "<new term>" to "regulation of macromolecule metabolic process"
* Set definition of GO:0060255 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass."
* Added definition dbxref GOC:dph to GO:0060255
* Added definition dbxref GOC:tb to GO:0060255
* Copied GO:0060255 to GO:0043170 with type regulates
* Copied GO:0060255 to GO:0019222 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0060255
* Deleted GO:0000967 --OBO_REL:is_a--> GO:0000966
* Copied GO:0000967 to GO:0034471 with type OBO_REL:is_a
* Changed definition of GO:0004629 from "Catalysis of the reaction: a phosphatidylcholine + H2O = 1,2-diacylglycerol + choline phosphate." to "Catalysis of the reaction: a phospholipid + H2O = 1,2-diacylglycerol + a phosphatidate."
* Deleted definition dbxref Oxford Dictionary of Biochemistry and Molecular Biology (ISBN:0198506732) from GO:0004629
* Added definition dbxref EC:3.1.4.4 to GO:0004629
* Added definition dbxref GOC:mah to GO:0004629
* Deleted general dbxref EC:3.1.4.3 from GO:0004629
* Deleted general dbxref MetaCyc:PHOSPHOLIPASE-C-RXN from GO:0004629
* Deleted general dbxref Reactome:11457 from GO:0004629
* Deleted synonym "alpha-toxin" from GO:0004629
* Deleted synonym "Clostridium oedematiens beta- and gamma-toxins activity" from GO:0004629
* Deleted synonym "Clostridium welchii alpha-toxin activity" from GO:0004629
* Deleted synonym "heat-labile hemolysin" from GO:0004629
* Changed synonym scope of GO:0004629 from "Exact" to "Related"
* Deleted synonym "lipophosphodiesterase I activity" from GO:0004629
* Deleted synonym "phosphatidylcholine cholinephosphohydrolase activity" from GO:0004629
* Deleted synonym "phospholipase C, acting on phosphatidylcholine" from GO:0004629
* Changed definition of GO:0005796 from "The volume enclosed by the membranes of any cisterna of the Golgi apparatus." to "The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks."
* Deleted GO:0005813 --OBO_REL:is_a--> GO:0044430
* Deleted GO:0005816 --OBO_REL:is_a--> GO:0044430
* Deleted GO:0006364 --OBO_REL:is_a--> GO:0006396
* Copied GO:0006364 to GO:0034470 with type OBO_REL:is_a
* Deleted GO:0008033 --OBO_REL:is_a--> GO:0006396
* Copied GO:0008033 to GO:0034470 with type OBO_REL:is_a
* Deleted GO:0009306 --OBO_REL:is_a--> GO:0045184
* Copied GO:0010556 to GO:0060255 with type OBO_REL:is_a
* Changed name of GO:0010588 from "cotyledon vascular tissue pattern formation" to "green leaf volatile biosynthetic process"
* Changed definition of GO:0010588 from "Vascular tissue pattern formation as it occurs in the cotyledon of vascular plants." to "The biosynthesis of volatile molecules emitted from green plants, such as hexenal, hexenol and hexenyl acetate, from linoleic acid or linolenic acid."
* Deleted definition dbxref PMID:10559439 from GO:0010588
* Added definition dbxref PMID:17163883 to GO:0010588
* Deleted GO:0010588 --OBO_REL:is_a--> GO:0010051
* Copied GO:0010588 to GO:0019372 with type OBO_REL:is_a
* Changed name of GO:0010589 from "leaf proximal/distal pattern formation" to "NAD(P)H dehydrogenase complex (plastoquinone)"
* Changed definition of GO:0010589 from "The regionalization process within a leaf by which specific areas of cell differentiation are determined along a proximal/distal axis." to "Complex that possesses NAD(P)H dehydrogenase (plastoquinone) activity. The complex is one of the components of the electron transport chain. It is involved in electron transport from an unidentified electron donor, possibly NADH, NADPH or ferredoxin(Fd) to the plastoquinone pool."
* Deleted definition dbxref PMID:18398054 from GO:0010589
* Added definition dbxref PMID:15608332 to GO:0010589
* Added synonym "plastid NAD(P)H dehydrogenase complex" to GO:0010589
* Changed synonym scope of GO:0010589 from "Related" to "Exact"
* Deleted GO:0010589 --OBO_REL:is_a--> GO:0009954
* Copied GO:0010589 to GO:0044425 with type OBO_REL:is_a
* Copied GO:0010589 to GO:0044424 with type OBO_REL:is_a
* Copied GO:0010589 to GO:0043234 with type OBO_REL:is_a
* Deleted GO:0010590 --OBO_REL:is_a--> GO:0031050
* Deleted GO:0010590 --part_of--> GO:0016246
* Destroyed object GO:0010590
* Deleted GO:0010591 --regulates--> GO:0009851
* Deleted GO:0010591 --OBO_REL:is_a--> GO:0046885
* Deleted GO:0010592 --OBO_REL:is_a--> GO:0010591
* Destroyed object GO:0010591
* Deleted GO:0010592 --positively_regulates--> GO:0009851
* Deleted GO:0010592 --OBO_REL:is_a--> GO:0046886
* Deleted GO:0010592 --OBO_REL:is_a--> GO:0010591
* Destroyed object GO:0010592
* Deleted GO:0010593 --regulates--> GO:0018871
* Deleted GO:0010593 --OBO_REL:is_a--> GO:0032350
* Destroyed object GO:0010593
* Deleted GO:0016180 --OBO_REL:is_a--> GO:0006396
* Copied GO:0016180 to GO:0034470 with type OBO_REL:is_a
* Changed name of GO:0022618 from "protein-RNA complex assembly" to "ribonucleoprotein complex assembly"
* Deleted synonym "ribonucleoprotein complex assembly" from GO:0022618
* Added synonym "protein-RNA complex assembly" to GO:0022618
* Changed synonym scope of GO:0022618 from "Related" to "Exact"
* Deleted GO:0031053 --OBO_REL:is_a--> GO:0006396
* Copied GO:0031053 to GO:0034470 with type OBO_REL:is_a
* Deleted GO:0031054 --OBO_REL:is_a--> GO:0006396
* Copied GO:0031054 to GO:0034470 with type OBO_REL:is_a
* Deleted GO:0031125 --OBO_REL:is_a--> GO:0031123
* Copied GO:0031125 to GO:0043628 with type OBO_REL:is_a
* Deleted GO:0031126 --OBO_REL:is_a--> GO:0031123
* Copied GO:0031126 to GO:0043628 with type OBO_REL:is_a
* Deleted GO:0031985 --OBO_REL:is_a--> GO:0005795
* Copied GO:0031985 to GO:0044431 with type OBO_REL:is_a
* Copied GO:0031985 to GO:0005795 with type part_of
* Changed name of GO:0032040 from "small subunit processome" to "small-subunit processome"
* Added synonym "small subunit processome" to GO:0032040
* Changed synonym scope of GO:0032040 from "Related" to "Exact"
* Changed name of GO:0035084 from "flagellum axoneme biogenesis" to "flagellar axoneme biogenesis"
* Added synonym "flagellum axoneme biogenesis" to GO:0035084
* Deleted GO:0042780 --OBO_REL:is_a--> GO:0031123
* Copied GO:0042780 to GO:0043628 with type OBO_REL:is_a
* Deleted GO:0043144 --OBO_REL:is_a--> GO:0006396
* Copied GO:0043144 to GO:0034470 with type OBO_REL:is_a
* Added synonym "ncRNA 3' end processing" to GO:0043628
* Changed synonym scope of GO:0043628 from "Related" to "Exact"
* Copied GO:0043628 to GO:0034470 with type OBO_REL:is_a
* Deleted GO:0043903 --regulates--> GO:0051704
* Changed name of GO:0045197 from "establishment and/or maintenance of epithelial cell polarity" to "establishment and/or maintenance of epithelial cell apical/basal polarity"
* Changed name of GO:0045198 from "establishment of epithelial cell polarity" to "establishment of epithelial cell apical/basal polarity"
* Changed name of GO:0045199 from "maintenance of epithelial cell polarity" to "maintenance of epithelial cell apical/basal polarity"
* Added synonym "adipogenesis" to GO:0045444
* Changed synonym scope of GO:0045444 from "Related" to "Exact"
* Deleted GO:0045898 --OBO_REL:is_a--> GO:0019222
* Copied GO:0045898 to GO:0060255 with type OBO_REL:is_a
* Deleted GO:0050746 --OBO_REL:is_a--> GO:0032268
* Copied GO:0050746 to GO:0060255 with type OBO_REL:is_a
* Deleted GO:0051246 --OBO_REL:is_a--> GO:0019222
* Copied GO:0051246 to GO:0060255 with type OBO_REL:is_a
* Deleted GO:0060205 --OBO_REL:is_a--> GO:0043233
* Copied GO:0060205 to GO:0031983 with type OBO_REL:is_a
More information about the Go-diff
mailing list