[Go-diff] GO update 05/30/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Fri May 30 21:30:46 PDT 2008 

OBODIFF of gene_ontology_write.obo version 1.81 by 1.85

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010590
* Created object of type obo:TERM with id GO:0010591
* Created object of type obo:TERM with id GO:0010592
* Created object of type obo:TERM with id GO:0010593
* Created object of type obo:TERM with id GO:0010594
* Created object of type obo:TERM with id GO:0010595
* Created object of type obo:TERM with id GO:0010596
* Created object of type obo:TERM with id GO:0010597
* Created object of type obo:TERM with id GO:0010598
* Created object of type obo:TERM with id GO:0010599
* Created object of type obo:TERM with id GO:0010600
* Created object of type obo:TERM with id GO:0010601
* Created object of type obo:TERM with id GO:0010602
* Created object of type obo:TERM with id GO:0043913
* Populated new object GO:0010590 (macro)
  * Changed name of GO:0010590 from "<new term>" to "regulation of cell separation during cytokinesis"
  * Set definition of GO:0010590 to "Any process that modulates the rate, frequency or extent of the process of physically separating progeny cells during cytokinesis; this may involve enzymatic digestion of septum or cell wall components."
  * Added definition dbxref GOC:dph to GO:0010590
  * Added definition dbxref GOC:tb to GO:0010590
  * Copied GO:0010590 to GO:0000920 with type regulates
  * Copied GO:0010590 to GO:0032954 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010590
* Populated new object GO:0010591 (macro)
  * Changed name of GO:0010591 from "<new term>" to "regulation of lamellipodium biogenesis"
  * Set definition of GO:0010591 to "Any process that modulates the rate, frequency or extent of the formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell."
  * Added definition dbxref GOC:dph to GO:0010591
  * Added definition dbxref GOC:tb to GO:0010591
  * Copied GO:0010591 to GO:0030032 with type regulates
  * Copied GO:0010591 to GO:0031344 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010591
* Populated new object GO:0010592 (macro)
  * Changed name of GO:0010592 from "<new term>" to "positive regulation of lamellipodium biogenesis"
  * Set definition of GO:0010592 to "Any process that increases the rate, frequency or extent of the formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell."
  * Added definition dbxref GOC:dph to GO:0010592
  * Added definition dbxref GOC:tb to GO:0010592
  * Copied GO:0010592 to GO:0010591 with type OBO_REL:is_a
  * Copied GO:0010592 to GO:0030032 with type positively_regulates
  * Copied GO:0010592 to GO:0031346 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010592
* Populated new object GO:0010593 (macro)
  * Changed name of GO:0010593 from "<new term>" to "negative regulation of lamellipodium biogenesis"
  * Set definition of GO:0010593 to "Any process that decreases the rate, frequency or extent of the formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell."
  * Added definition dbxref GOC:dph to GO:0010593
  * Added definition dbxref GOC:tb to GO:0010593
  * Copied GO:0010593 to GO:0031345 with type OBO_REL:is_a
  * Copied GO:0010593 to GO:0030032 with type negatively_regulates
  * Copied GO:0010593 to GO:0010591 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010593
* Populated new object GO:0010594 (macro)
  * Changed name of GO:0010594 from "<new term>" to "regulation of endothelial cell migration"
  * Set definition of GO:0010594 to "Any process that modulates the rate, frequency, or extent of the orderly movement of endothelial cells into the extracellular matrix to form an endothelium."
  * Added definition dbxref GOC:dph to GO:0010594
  * Added definition dbxref GOC:tb to GO:0010594
  * Copied GO:0010594 to GO:0030334 with type OBO_REL:is_a
  * Copied GO:0010594 to GO:0043542 with type regulates
  * Assigned namespace "biological_process" to GO:0010594
* Populated new object GO:0010595 (macro)
  * Changed name of GO:0010595 from "<new term>" to "positive regulation of endothelial cell migration"
  * Set definition of GO:0010595 to "Any process that increases the rate, frequency, or extent of the orderly movement of endothelial cells into the extracellular matrix to form an endothelium."
  * Added definition dbxref GOC:dph to GO:0010595
  * Added definition dbxref GOC:tb to GO:0010595
  * Copied GO:0010595 to GO:0043542 with type positively_regulates
  * Copied GO:0010595 to GO:0030335 with type OBO_REL:is_a
  * Copied GO:0010595 to GO:0010594 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010595
* Populated new object GO:0010596 (macro)
  * Changed name of GO:0010596 from "<new term>" to "negative regulation of endothelial cell migration"
  * Set definition of GO:0010596 to "Any process that decreases the rate, frequency, or extent of the orderly movement of endothelial cells into the extracellular matrix to form an endothelium."
  * Added definition dbxref GOC:dph to GO:0010596
  * Added definition dbxref GOC:tb to GO:0010596
  * Copied GO:0010596 to GO:0043542 with type negatively_regulates
  * Copied GO:0010596 to GO:0010594 with type OBO_REL:is_a
  * Copied GO:0010596 to GO:0030336 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010596
* Populated new object GO:0010597 (macro)
  * Changed name of GO:0010597 from "<new term>" to "green leaf volatile biosynthetic process"
  * Set definition of GO:0010597 to "The biosynthesis of volatile molecules emitted from green plants, such as hexenal, hexenol and hexenyl acetate, from linoleic acid or linolenic acid."
  * Added definition dbxref PMID:17163883 to GO:0010597
  * Copied GO:0010597 to GO:0019372 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010597
* Populated new object GO:0010598 (macro)
  * Changed name of GO:0010598 from "<new term>" to "NAD(P)H dehydrogenase complex (plastoquinone)"
  * Set definition of GO:0010598 to "Complex that possesses NAD(P)H dehydrogenase (plastoquinone) activity. The complex is one of the components of the electron transport chain. It is involved in electron transport from an unidentified electron donor, possibly NADH, NADPH or ferredoxin(Fd) to the plastoquinone pool."
  * Added definition dbxref PMID:15608332 to GO:0010598
  * Copied GO:0010598 to GO:0044425 with type OBO_REL:is_a
  * Copied GO:0010598 to GO:0044424 with type OBO_REL:is_a
  * Copied GO:0010598 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0010598
* Populated new object GO:0010599 (macro)
  * Changed name of GO:0010599 from "<new term>" to "RNA interference, production of lsiRNA"
  * Set definition of GO:0010599 to "Cleavage of double-stranded RNA to form lsiRNA (long small interfering RNA), a class of siRNAs 30 to 40 nt in length. lsiRNAs are induced by pathogen infection or under specific growth conditions."
  * Added definition dbxref PMID:18003861 to GO:0010599
  * Copied GO:0010599 to GO:0016246 with type part_of
  * Copied GO:0010599 to GO:0031050 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010599
* Populated new object GO:0010600 (macro)
  * Changed name of GO:0010600 from "<new term>" to "regulation of auxin biosynthetic process"
  * Set definition of GO:0010600 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth."
  * Added definition dbxref PMID:18287041 to GO:0010600
  * Copied GO:0010600 to GO:0009851 with type regulates
  * Copied GO:0010600 to GO:0046885 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010600
* Populated new object GO:0010601 (macro)
  * Changed name of GO:0010601 from "<new term>" to "positive regulation of auxin biosynthetic process"
  * Set definition of GO:0010601 to "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth."
  * Added definition dbxref PMID:18287041 to GO:0010601
  * Copied GO:0010601 to GO:0046886 with type OBO_REL:is_a
  * Copied GO:0010601 to GO:0010600 with type OBO_REL:is_a
  * Copied GO:0010601 to GO:0009851 with type positively_regulates
  * Assigned namespace "biological_process" to GO:0010601
* Populated new object GO:0010602 (macro)
  * Changed name of GO:0010602 from "<new term>" to "regulation of 1-aminocyclopropane-1-carboxylate metabolic process"
  * Set definition of GO:0010602 to "Regulation of the chemical reactions and pathways involving 1-aminocyclopropane-1-carboxylate, the anion of 1-aminocyclopropane-1-carboxylic acid, a natural product found in plant tissues. It is a key intermediate in the biosynthesis of ethylene (ethene), a fruit-ripening hormone in plants."
  * Added definition dbxref PMID:18055613 to GO:0010602
  * Copied GO:0010602 to GO:0032350 with type OBO_REL:is_a
  * Copied GO:0010602 to GO:0018871 with type regulates
  * Assigned namespace "biological_process" to GO:0010602
* Populated new object GO:0043913 (macro)
  * Changed name of GO:0043913 from "<new term>" to "chromosome segregation-directing complex"
  * Set definition of GO:0043913 to "A trimeric protein complex which in E. coli is composed of the subunits MreB, MreC and MreD. The complex directs longitudinal cell wall synthesis, maintaining cell morphology."
  * Added definition dbxref GOC:jl to GO:0043913
  * Added definition dbxref PMID:15612918 to GO:0043913
  * Added general dbxref IMG:02994 to GO:0043913
  * Added GO:0043913 to category gosubset_prok
  * Added synonym "chromosome segregation directing complex" to GO:0043913
  * Changed synonym scope of GO:0043913 from "Related" to "Exact"
  * Added synonym "longitudinal peptidoglycan synthesis-directing complex" to GO:0043913
  * Changed synonym scope of GO:0043913 from "Related" to "Exact"
  * Added synonym "MreBCD complex" to GO:0043913
  * Changed synonym scope of GO:0043913 from "Related" to "Narrow"
  * Copied GO:0043913 to GO:0044425 with type OBO_REL:is_a
  * Copied GO:0043913 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0043913
* Copied GO:0000723 to GO:0060249 with type OBO_REL:is_a
* Copied GO:0001894 to GO:0060249 with type OBO_REL:is_a
* Changed name of GO:0010588 from "green leaf volatile biosynthetic process" to "cotyledon vascular tissue pattern formation"
* Changed definition of GO:0010588 from "The biosynthesis of volatile molecules emitted from green plants, such as hexenal, hexenol and hexenyl acetate, from linoleic acid or linolenic acid." to "Vascular tissue pattern formation as it occurs in the cotyledon of vascular plants."
* Deleted definition dbxref PMID:17163883 from GO:0010588
* Added definition dbxref PMID:10559439 to GO:0010588
* Deleted GO:0010588 --OBO_REL:is_a--> GO:0019372
* Copied GO:0010588 to GO:0010051 with type OBO_REL:is_a
* Changed name of GO:0010589 from "NAD(P)H dehydrogenase complex (plastoquinone)" to "leaf proximal/distal pattern formation"
* Changed definition of GO:0010589 from "Complex that possesses NAD(P)H dehydrogenase (plastoquinone) activity. The complex is one of the components of the electron transport chain. It is involved in electron transport from an unidentified electron donor, possibly NADH, NADPH or ferredoxin(Fd) to the plastoquinone pool." to "The regionalization process within a leaf by which specific areas of cell differentiation are determined along a proximal/distal axis."
* Deleted definition dbxref PMID:15608332 from GO:0010589
* Added definition dbxref PMID:18398054 to GO:0010589
* Deleted GO:0010589 --OBO_REL:is_a--> GO:0044424
* Deleted GO:0010589 --OBO_REL:is_a--> GO:0043234
* Deleted GO:0010589 --OBO_REL:is_a--> GO:0044425
* Copied GO:0010589 to GO:0009954 with type OBO_REL:is_a
* Copied GO:0019827 to GO:0060249 with type OBO_REL:is_a
* Deleted GO:0031344 --part_of--> GO:0051128
* Copied GO:0031566 to GO:0060249 with type OBO_REL:is_a
* Copied GO:0034331 to GO:0060249 with type OBO_REL:is_a
* Copied GO:0043055 to GO:0060249 with type OBO_REL:is_a
* Deleted GO:0043535 --OBO_REL:is_a--> GO:0030334
* Copied GO:0043535 to GO:0010594 with type OBO_REL:is_a
* Deleted GO:0043536 --OBO_REL:is_a--> GO:0030335
* Copied GO:0043536 to GO:0010595 with type OBO_REL:is_a
* Deleted GO:0043537 --OBO_REL:is_a--> GO:0030336
* Copied GO:0043537 to GO:0010596 with type OBO_REL:is_a
* Deleted GO:0044425 --OBO_REL:is_a--> GO:0044464
* Deleted GO:0045494 --OBO_REL:is_a--> GO:0019725
* Copied GO:0045494 to GO:0060249 with type OBO_REL:is_a
* Added synonym "muscle fiber maintenance" to GO:0046716
* Added general dbxref GOC:tb to synonym muscle fiber maintenance of GO:0046716
* Added general dbxref GOC:dph to synonym muscle fiber maintenance of GO:0046716
* Changed synonym scope of GO:0046716 from "Related" to "Exact"
* Copied GO:0046716 to GO:0060249 with type OBO_REL:is_a

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