[Go-diff] GO update 11/03/2008

Mon Nov 3 21:30:46 PST 2008

OBODIFF of gene_ontology_write.obo version 1.292 by 1.294

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010802
* Created object of type obo:TERM with id GO:0010803
* Created object of type obo:TERM with id GO:0010804
* Populated new object GO:0010802 (macro)
  * Changed name of GO:0010802 from "<new term>" to "respiratory gaseous exchange by respiratory system"
  * Set definition of GO:0010802 to "The process of gaseous exchange between an organism and its environment carried out by the organism's respiratory system. The respiratory system is an organ system responsible for respiratory gaseous exchange."
  * Added definition dbxref GOC:dph to GO:0010802
  * Added definition dbxref GOC:tb to GO:0010802
  * Copied GO:0010802 to GO:0003016 with type OBO_REL:is_a
  * Copied GO:0010802 to GO:0007585 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010802
* Populated new object GO:0010803 (macro)
  * Changed name of GO:0010803 from "<new term>" to "regulation of tumor necrosis factor-mediated signaling pathway"
  * Set definition of GO:0010803 to "Any process that modulates the rate or extent of the tumor necrosis factor-mediated signaling pathway. The tumor necrosis factor-mediated signaling pathway is the series of molecular signals generated as a consequence of tumor necrosis factor binding to a cell surface receptor."
  * Added definition dbxref GOC:dph to GO:0010803
  * Added definition dbxref GOC:tb to GO:0010803
  * Added synonym "regulation of TNF signaling" to GO:0010803
  * Added general dbxref GOC:tb to synonym regulation of TNF signaling of GO:0010803
  * Added general dbxref GOC:dph to synonym regulation of TNF signaling of GO:0010803
  * Changed synonym scope of GO:0010803 from "Related" to "Exact"
  * Added synonym "regulation of TNF-mediated signaling pathway" to GO:0010803
  * Added general dbxref GOC:tb to synonym regulation of TNF-mediated signaling pathway of GO:0010803
  * Added general dbxref GOC:dph to synonym regulation of TNF-mediated signaling pathway of GO:0010803
  * Changed synonym scope of GO:0010803 from "Related" to "Exact"
  * Copied GO:0010803 to GO:0033209 with type regulates
  * Copied GO:0010803 to GO:0001959 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010803
* Populated new object GO:0010804 (macro)
  * Changed name of GO:0010804 from "<new term>" to "negative regulation of regulation of tumor necrosis factor-mediated signaling pathway"
  * Set definition of GO:0010804 to "Any process that decreases the rate or extent of the tumor necrosis factor-mediated signaling pathway. The tumor necrosis factor-mediated signaling pathway is the series of molecular signals generated as a consequence of tumor necrosis factor binding to a cell surface receptor."
  * Added definition dbxref GOC:dph to GO:0010804
  * Added definition dbxref GOC:tb to GO:0010804
  * Added synonym "negative regulation of TNF signaling" to GO:0010804
  * Added general dbxref GOC:tb to synonym negative regulation of TNF signaling of GO:0010804
  * Added general dbxref GOC:dph to synonym negative regulation of TNF signaling of GO:0010804
  * Changed synonym scope of GO:0010804 from "Related" to "Exact"
  * Added synonym "negative regulation of TNF-mediated signaling pathway" to GO:0010804
  * Added general dbxref GOC:tb to synonym negative regulation of TNF-mediated signaling pathway of GO:0010804
  * Added general dbxref GOC:dph to synonym negative regulation of TNF-mediated signaling pathway of GO:0010804
  * Changed synonym scope of GO:0010804 from "Related" to "Exact"
  * Copied GO:0010804 to GO:0033209 with type negatively_regulates
  * Copied GO:0010804 to GO:0001960 with type OBO_REL:is_a
  * Copied GO:0010804 to GO:0010803 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010804
* Copied GO:0002086 to GO:0010802 with type part_of
* Changed name of GO:0002087 from "neurological control of breathing" to "regulation of respiratory gaseous exchange by neurological process"
* Added definition dbxref GOC:tb to GO:0002087
* Added synonym "neurological control of breathing" to GO:0002087
* Added general dbxref GOC:tb to synonym neurological control of breathing of GO:0002087
* Added general dbxref GOC:dph to synonym neurological control of breathing of GO:0002087
* Changed synonym scope of GO:0002087 from "Related" to "Exact"
* Deleted GO:0002087 --OBO_REL:is_a--> GO:0003016
* Copied GO:0002087 to GO:0043576 with type OBO_REL:is_a
* Copied GO:0002087 to GO:0010802 with type regulates
* Changed definition of GO:0009946 from "The establishment, maintenance and elaboration of the proximal/distal axis." to "The establishment, maintenance and elaboration of the proximal/distal axis. The proximal/distal axis is defined by a line that runs from main body (proximal end) of an organism outward (distal end)."
* Added definition dbxref GOC:dph to GO:0009946
* Added definition dbxref GOC:tb to GO:0009946
* Changed definition of GO:0009948 from "The establishment, maintenance and elaboration of the anterior/posterior axis." to "The establishment, maintenance and elaboration of the anterior/posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism."
* Added definition dbxref GOC:dph to GO:0009948
* Added definition dbxref GOC:tb to GO:0009948
* Changed definition of GO:0009950 from "The establishment, maintenance and elaboration of the dorsal/ventral axis." to "The establishment, maintenance and elaboration of the dorsal/ventral axis. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism."
* Added definition dbxref GOC:dph to GO:0009950
* Added definition dbxref GOC:tb to GO:0009950
* Changed definition of GO:0009952 from "The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis." to "The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism."
* Added definition dbxref GOC:tb to GO:0009952
* Changed definition of GO:0009953 from "The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation." to "The regionalization process by which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism."
* Added definition dbxref GOC:tb to GO:0009953
* Changed definition of GO:0009954 from "The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis." to "The regionalization process by which specific areas of cell differentiation are determined along a proximal/distal axis. The proximal/distal axis is defined by a line that runs from main body (proximal end) of an organism outward (distal end)."
* Changed definition of GO:0010076 from "Any process involved in maintaining the identity of a floral meristem. Identity is considered to be the aggregate of characteristics by which a structure is recognized." to "The process by which an organism retains a population of floral meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate."
* Added definition dbxref GOC:dph to GO:0010076
* Changed definition of GO:0010077 from "Any process involved in maintaining the identity of an inflorescence meristem. Identity is considered to be the aggregate of characteristics by which a structure is recognized." to "The process by which an organism retains a population of inflorescence meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate."
* Added definition dbxref GOC:dph to GO:0010077
* Changed definition of GO:0010078 from "Any process involved in maintaining the identity of a root meristem. Identity is considered to be the aggregate of characteristics by which a structure is recognized." to "The process by which an organism retains a population of root meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate."
* Added definition dbxref GOC:dph to GO:0010078
* Changed definition of GO:0010079 from "Any process involved in maintaining the identity of a vegetative meristem. Identity is considered to be the aggregate of characteristics by which a structure is recognized." to "The process by which an organism retains a population of vegetative meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate."
* Added definition dbxref GOC:dph to GO:0010079
* Changed definition of GO:0010492 from "Any process involved in maintaining the identity of the shoot apical meristem. Identity is considered to be the aggregate of characteristics by which a structure is recognized." to "The process by which an organism retains a population of shoot apical meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate."
* Added definition dbxref GOC:dph to GO:0010492
* Added definition dbxref GOC:tb to GO:0010492
* Changed definition of GO:0033563 from "The process by which the migration of an axon growth cone is directed to a specific target site along the dorsal-ventral body axis in response to a combination of attractive and repulsive cues." to "The process by which the migration of an axon growth cone is directed to a specific target site along the dorsal-ventral body axis in response to a combination of attractive and repulsive cues. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism."
* Added definition dbxref GOC:dph to GO:0033563
* Added definition dbxref GOC:tb to GO:0033563
* Changed definition of GO:0033564 from "The process by which the migration of an axon growth cone is directed to a specific target site along the anterior-posterior body axis in response to a combination of attractive and repulsive cues." to "The process by which the migration of an axon growth cone is directed to a specific target site along the anterior-posterior body axis in response to a combination of attractive and repulsive cues. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism."
* Added definition dbxref GOC:dph to GO:0033564
* Added definition dbxref GOC:tb to GO:0033564