[Go-diff] GO update 11/12/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Wed Nov 12 21:30:47 PST 2008 

OBODIFF of gene_ontology_write.obo version 1.307 by 1.309

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0070098
* Created object of type obo:TERM with id GO:0070099
* Created object of type obo:TERM with id GO:0070100
* Created object of type obo:TERM with id GO:0070101
* Created object of type obo:TERM with id GO:0070102
* Created object of type obo:TERM with id GO:0070103
* Created object of type obo:TERM with id GO:0070104
* Created object of type obo:TERM with id GO:0070105
* Created object of type obo:TERM with id GO:0070106
* Created object of type obo:TERM with id GO:0070107
* Created object of type obo:TERM with id GO:0070108
* Created object of type obo:TERM with id GO:0070109
* Created object of type obo:TERM with id GO:0070110
* Populated new object GO:0070098 (macro)
  * Changed name of GO:0070098 from "<new term>" to "chemokine-mediated signaling pathway"
  * Set definition of GO:0070098 to "A series of molecular signals generated as a consequence of a chemokine binding to a cell surface receptor."
  * Added definition dbxref GOC:mah to GO:0070098
  * Added synonym "chemokine-mediated signalling pathway" to GO:0070098
  * Added general dbxref GOC:mah to synonym chemokine-mediated signalling pathway of GO:0070098
  * Changed synonym scope of GO:0070098 from "Related" to "Exact"
  * Copied GO:0070098 to GO:0019221 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070098
* Populated new object GO:0070099 (macro)
  * Changed name of GO:0070099 from "<new term>" to "regulation of chemokine-mediated signaling pathway"
  * Set definition of GO:0070099 to "Any process that modulates the rate, frequency or extent of the series of molecular events generated as a consequence of a chemokine binding to a cell surface receptor."
  * Added definition dbxref GOC:mah to GO:0070099
  * Added synonym "regulation of chemokine-mediated signalling pathway" to GO:0070099
  * Added general dbxref GOC:mah to synonym regulation of chemokine-mediated signalling pathway of GO:0070099
  * Changed synonym scope of GO:0070099 from "Related" to "Exact"
  * Copied GO:0070099 to GO:0070098 with type regulates
  * Copied GO:0070099 to GO:0001959 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070099
* Populated new object GO:0070100 (macro)
  * Changed name of GO:0070100 from "<new term>" to "negative regulation of chemokine-mediated signaling pathway"
  * Set definition of GO:0070100 to "Any process that decreases the rate, frequency or extent of the series of molecular events generated as a consequence of a chemokine binding to a cell surface receptor."
  * Added definition dbxref GOC:mah to GO:0070100
  * Added synonym "negative regulation of chemokine-mediated signalling pathway" to GO:0070100
  * Added general dbxref GOC:mah to synonym negative regulation of chemokine-mediated signalling pathway of GO:0070100
  * Changed synonym scope of GO:0070100 from "Related" to "Exact"
  * Copied GO:0070100 to GO:0001960 with type OBO_REL:is_a
  * Copied GO:0070100 to GO:0070099 with type OBO_REL:is_a
  * Copied GO:0070100 to GO:0070098 with type negatively_regulates
  * Assigned namespace "biological_process" to GO:0070100
* Populated new object GO:0070101 (macro)
  * Changed name of GO:0070101 from "<new term>" to "positive regulation of chemokine-mediated signaling pathway"
  * Set definition of GO:0070101 to "Any process that increases the rate, frequency or extent of the series of molecular events generated as a consequence of a chemokine binding to a cell surface receptor."
  * Added definition dbxref GOC:mah to GO:0070101
  * Added synonym "positive regulation of chemokine-mediated signalling pathway" to GO:0070101
  * Added general dbxref GOC:mah to synonym positive regulation of chemokine-mediated signalling pathway of GO:0070101
  * Changed synonym scope of GO:0070101 from "Related" to "Exact"
  * Copied GO:0070101 to GO:0070099 with type OBO_REL:is_a
  * Copied GO:0070101 to GO:0070098 with type positively_regulates
  * Copied GO:0070101 to GO:0001961 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070101
* Populated new object GO:0070102 (macro)
  * Changed name of GO:0070102 from "<new term>" to "interleukin-6-mediated signaling pathway"
  * Set definition of GO:0070102 to "A series of molecular events generated as a consequence of interleukin-6 binding to a cell surface receptor."
  * Added definition dbxref GOC:add to GO:0070102
  * Added definition dbxref GOC:mah to GO:0070102
  * Added synonym "IL-6-mediated signaling pathway" to GO:0070102
  * Added synonym "interleukin-6-mediated signalling pathway" to GO:0070102
  * Added general dbxref GOC:mah to synonym interleukin-6-mediated signalling pathway of GO:0070102
  * Changed synonym scope of GO:0070102 from "Related" to "Exact"
  * Copied GO:0070102 to GO:0019221 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070102
* Populated new object GO:0070103 (macro)
  * Changed name of GO:0070103 from "<new term>" to "regulation of interleukin-6-mediated signaling pathway"
  * Set definition of GO:0070103 to "Any process that modulates the rate, frequency or extent of the series of molecular events generated as a consequence of interleukin-6-mediated binding to a cell surface receptor."
  * Added definition dbxref GOC:mah to GO:0070103
  * Added synonym "regulation of IL-6-mediated signaling pathway" to GO:0070103
  * Added general dbxref GOC:mah to synonym regulation of IL-6-mediated signaling pathway of GO:0070103
  * Changed synonym scope of GO:0070103 from "Related" to "Exact"
  * Added synonym "regulation of interleukin-6-mediated signalling pathway" to GO:0070103
  * Added general dbxref GOC:mah to synonym regulation of interleukin-6-mediated signalling pathway of GO:0070103
  * Changed synonym scope of GO:0070103 from "Related" to "Exact"
  * Copied GO:0070103 to GO:0001959 with type OBO_REL:is_a
  * Copied GO:0070103 to GO:0070102 with type regulates
  * Assigned namespace "biological_process" to GO:0070103
* Populated new object GO:0070104 (macro)
  * Changed name of GO:0070104 from "<new term>" to "negative regulation of interleukin-6-mediated signaling pathway"
  * Set definition of GO:0070104 to "Any process that decreases the rate, frequency or extent of the series of molecular events generated as a consequence of interleukin-6 binding to a cell surface receptor."
  * Added definition dbxref GOC:mah to GO:0070104
  * Added synonym "negative regulation of IL-6-mediated signaling pathway" to GO:0070104
  * Added general dbxref GOC:mah to synonym negative regulation of IL-6-mediated signaling pathway of GO:0070104
  * Changed synonym scope of GO:0070104 from "Related" to "Exact"
  * Added synonym "negative regulation of interleukin-6-mediated signalling pathway" to GO:0070104
  * Added general dbxref GOC:mah to synonym negative regulation of interleukin-6-mediated signalling pathway of GO:0070104
  * Changed synonym scope of GO:0070104 from "Related" to "Exact"
  * Copied GO:0070104 to GO:0001960 with type OBO_REL:is_a
  * Copied GO:0070104 to GO:0070103 with type OBO_REL:is_a
  * Copied GO:0070104 to GO:0070102 with type negatively_regulates
  * Assigned namespace "biological_process" to GO:0070104
* Populated new object GO:0070105 (macro)
  * Changed name of GO:0070105 from "<new term>" to "positive regulation of interleukin-6-mediated signaling pathway"
  * Set definition of GO:0070105 to "Any process that increases the rate, frequency or extent of the series of molecular events generated as a consequence of interleukin-6 binding to a cell surface receptor."
  * Added definition dbxref GOC:mah to GO:0070105
  * Added synonym "positive regulation of IL-6-mediated signaling pathway" to GO:0070105
  * Added general dbxref GOC:mah to synonym positive regulation of IL-6-mediated signaling pathway of GO:0070105
  * Changed synonym scope of GO:0070105 from "Related" to "Exact"
  * Added synonym "positive regulation of interleukin-6-mediated signalling pathway" to GO:0070105
  * Added general dbxref GOC:mah to synonym positive regulation of interleukin-6-mediated signalling pathway of GO:0070105
  * Changed synonym scope of GO:0070105 from "Related" to "Exact"
  * Copied GO:0070105 to GO:0070102 with type positively_regulates
  * Copied GO:0070105 to GO:0001961 with type OBO_REL:is_a
  * Copied GO:0070105 to GO:0070103 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070105
* Populated new object GO:0070106 (macro)
  * Changed name of GO:0070106 from "<new term>" to "interleukin-27-mediated signaling pathway"
  * Set definition of GO:0070106 to "A series of molecular events generated as a consequence of interleukin-27 binding to a cell surface receptor."
  * Added definition dbxref GOC:add to GO:0070106
  * Added definition dbxref GOC:mah to GO:0070106
  * Added synonym "IL-27-mediated signaling pathway" to GO:0070106
  * Added synonym "IL27RA/IL6ST signaling pathway" to GO:0070106
  * Added general dbxref GOC:add to synonym IL27RA/IL6ST signaling pathway of GO:0070106
  * Changed synonym scope of GO:0070106 from "Related" to "Exact"
  * Added synonym "interleukin-27-mediated signalling pathway" to GO:0070106
  * Added general dbxref GOC:mah to synonym interleukin-27-mediated signalling pathway of GO:0070106
  * Changed synonym scope of GO:0070106 from "Related" to "Exact"
  * Copied GO:0070106 to GO:0019221 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070106
* Populated new object GO:0070107 (macro)
  * Changed name of GO:0070107 from "<new term>" to "regulation of interleukin-27-mediated signaling pathway"
  * Set definition of GO:0070107 to "Any process that modulates the rate, frequency or extent of the series of molecular events generated as a consequence of interleukin-27-mediated binding to a cell surface receptor."
  * Added definition dbxref GOC:mah to GO:0070107
  * Added synonym "regulation of IL-27-mediated signaling pathway" to GO:0070107
  * Added general dbxref GOC:mah to synonym regulation of IL-27-mediated signaling pathway of GO:0070107
  * Changed synonym scope of GO:0070107 from "Related" to "Exact"
  * Added synonym "regulation of IL27RA/IL6ST signaling pathway" to GO:0070107
  * Added general dbxref GOC:add to synonym regulation of IL27RA/IL6ST signaling pathway of GO:0070107
  * Added synonym "regulation of interleukin-27-mediated signalling pathway" to GO:0070107
  * Added general dbxref GOC:mah to synonym regulation of interleukin-27-mediated signalling pathway of GO:0070107
  * Changed synonym scope of GO:0070107 from "Related" to "Exact"
  * Copied GO:0070107 to GO:0070106 with type regulates
  * Copied GO:0070107 to GO:0001959 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070107
* Populated new object GO:0070108 (macro)
  * Changed name of GO:0070108 from "<new term>" to "negative regulation of interleukin-27-mediated signaling pathway"
  * Set definition of GO:0070108 to "Any process that decreases the rate, frequency or extent of the series of molecular events generated as a consequence of interleukin-27 binding to a cell surface receptor."
  * Added definition dbxref GOC:mah to GO:0070108
  * Added synonym "negative regulation of IL-27-mediated signaling pathway" to GO:0070108
  * Added general dbxref GOC:mah to synonym negative regulation of IL-27-mediated signaling pathway of GO:0070108
  * Changed synonym scope of GO:0070108 from "Related" to "Exact"
  * Added synonym "negative regulation of IL27RA/IL6ST signaling pathway" to GO:0070108
  * Added general dbxref GOC:add to synonym negative regulation of IL27RA/IL6ST signaling pathway of GO:0070108
  * Changed synonym scope of GO:0070108 from "Related" to "Exact"
  * Added synonym "negative regulation of interleukin-27-mediated signalling pathway" to GO:0070108
  * Added general dbxref GOC:mah to synonym negative regulation of interleukin-27-mediated signalling pathway of GO:0070108
  * Changed synonym scope of GO:0070108 from "Related" to "Exact"
  * Copied GO:0070108 to GO:0070106 with type negatively_regulates
  * Copied GO:0070108 to GO:0001960 with type OBO_REL:is_a
  * Copied GO:0070108 to GO:0070107 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070108
* Populated new object GO:0070109 (macro)
  * Changed name of GO:0070109 from "<new term>" to "positive regulation of interleukin-27-mediated signaling pathway"
  * Set definition of GO:0070109 to "Any process that increases the rate, frequency or extent of the series of molecular events generated as a consequence of interleukin-27 binding to a cell surface receptor."
  * Added definition dbxref GOC:mah to GO:0070109
  * Added synonym "positive regulation of IL-27-mediated signaling pathway" to GO:0070109
  * Added general dbxref GOC:mah to synonym positive regulation of IL-27-mediated signaling pathway of GO:0070109
  * Changed synonym scope of GO:0070109 from "Related" to "Exact"
  * Added synonym "positive regulation of IL27RA/IL6ST signaling pathway" to GO:0070109
  * Added general dbxref GOC:add to synonym positive regulation of IL27RA/IL6ST signaling pathway of GO:0070109
  * Changed synonym scope of GO:0070109 from "Related" to "Exact"
  * Added synonym "positive regulation of interleukin-27-mediated signalling pathway" to GO:0070109
  * Added general dbxref GOC:mah to synonym positive regulation of interleukin-27-mediated signalling pathway of GO:0070109
  * Changed synonym scope of GO:0070109 from "Related" to "Exact"
  * Copied GO:0070109 to GO:0070107 with type OBO_REL:is_a
  * Copied GO:0070109 to GO:0070106 with type positively_regulates
  * Copied GO:0070109 to GO:0001961 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070109
* Populated new object GO:0070110 (macro)
  * Changed name of GO:0070110 from "<new term>" to "ciliary neurotrophic factor receptor complex"
  * Set definition of GO:0070110 to "A protein complex that acts as a receptor for the cytokine ciliary neurotrophic factor (CNTF). In humans the receptor complex is a hexamer composed of two molecules each of CNTF and CNTFR and one molecule each of gp130 and LIFR."
  * Added definition dbxref GOC:mah to GO:0070110
  * Added definition dbxref GOC:rl to GO:0070110
  * Added definition dbxref PMID:12707266 to GO:0070110
  * Copied GO:0070110 to GO:0043235 with type OBO_REL:is_a
  * Copied GO:0070110 to GO:0044459 with type OBO_REL:is_a
  * Copied GO:0070110 to GO:0005887 with type part_of
  * Assigned namespace "cellular_component" to GO:0070110
* Deleted GO:0001952 --OBO_REL:is_a--> GO:0030155
* Copied GO:0001952 to GO:0010810 with type OBO_REL:is_a
* Copied GO:0001953 to GO:0010812 with type OBO_REL:is_a
* Deleted GO:0001954 --OBO_REL:is_a--> GO:0045785
* Copied GO:0001954 to GO:0010811 with type OBO_REL:is_a
* Changed definition of GO:0005025 from "Combining with transforming growth factor beta to initiate a change in cell activity; upon ligand binding, catalyzes the phosphorylation of a type I TGF-beta receptor." to "Combining with a complex of transforming growth factor beta and a type II TGF-beta receptor to initiate a change in cell activity."
* Added definition dbxref Reactome:REACT_6945.1 to GO:0005025
* Changed definition of GO:0005026 from "Combining with transforming growth factor beta to initiate a change in cell activity; upon ligand binding, catalyzes the phosphorylation of a type I activin receptor." to "Combining with transforming growth factor beta to initiate a change in cell activity; upon ligand binding, binds to and catalyzes the phosphorylation of a type I TGF-beta receptor."
* Added definition dbxref Reactome:REACT_6872.1 to GO:0005026
* Copied GO:0010805 to GO:0051955 with type OBO_REL:is_a
* Copied GO:0010806 to GO:0051956 with type OBO_REL:is_a
* Copied GO:0010807 to GO:0046928 with type OBO_REL:is_a
* Copied GO:0010807 to GO:0017157 with type OBO_REL:is_a
* Changed name of GO:0019221 from "cytokine mediated signaling pathway" to "cytokine-mediated signaling pathway"
* Deleted general dbxref GOC:tb from synonym oocyte nucleus localization during oocyte axis determination of GO:0051663
* Deleted general dbxref GOC:dph from synonym oocyte nucleus localization during oocyte axis determination of GO:0051663
* Changed synonym scope of GO:0051663 from "Related" to "Exact"
* Copied GO:0060354 to GO:0048523 with type OBO_REL:is_a
* Copied GO:0075307 to GO:0043938 with type OBO_REL:is_a
* Copied GO:0075308 to GO:0043939 with type OBO_REL:is_a
* Copied GO:0075323 to GO:0043938 with type OBO_REL:is_a
* Copied GO:0075324 to GO:0043939 with type OBO_REL:is_a

More information about the Go-diff mailing list