[Go-diff] GO update 11/14/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Fri Nov 14 21:30:48 PST 2008 

OBODIFF of gene_ontology_write.obo version 1.310 by 1.313

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0070111
* Created object of type obo:TERM with id GO:0070112
* Created object of type obo:TERM with id GO:0070113
* Created object of type obo:TERM with id GO:0070114
* Created object of type obo:TERM with id GO:0070115
* Created object of type obo:TERM with id GO:0070116
* Created object of type obo:TERM with id GO:0070117
* Created object of type obo:TERM with id GO:0070118
* Created object of type obo:TERM with id GO:0070119
* Created object of type obo:TERM with id GO:0070120
* Created object of type obo:TERM with id GO:0070121
* Populated new object GO:0070111 (macro)
  * Changed name of GO:0070111 from "<new term>" to "organellar chromatophore"
  * Set definition of GO:0070111 to "A bacteroid-containing symbiosome in which the bacterial component is a genetically highly reduced cyanobacterium that is photosynthetically active and incapable of an independent existence outside its host. The chromatophore functions as a photosynthetic organelle, and has been found and characterized in the amoeba Paulinella chromatophora."
  * Added definition dbxref GOC:expert_mm to GO:0070111
  * Added definition dbxref PMID:18356055 to GO:0070111
  * Added synonym "Paulinella-type chromatophore" to GO:0070111
  * Changed synonym scope of GO:0070111 from "Related" to "Exact"
  * Copied GO:0070111 to GO:0043660 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070111
* Populated new object GO:0070112 (macro)
  * Changed name of GO:0070112 from "<new term>" to "organellar chromatophore membrane"
  * Set definition of GO:0070112 to "Either of the lipid bilayers that surround an organellar chromatophore."
  * Added definition dbxref GOC:mah to GO:0070112
  * Added GO:0070112 to category gosubset_prok
  * Added synonym "Paulinella-type chromatophore membrane" to GO:0070112
  * Added general dbxref GOC:mah to synonym Paulinella-type chromatophore membrane of GO:0070112
  * Changed synonym scope of GO:0070112 from "Related" to "Exact"
  * Copied GO:0070112 to GO:0030659 with type OBO_REL:is_a
  * Copied GO:0070112 to GO:0070111 with type part_of
  * Assigned namespace "cellular_component" to GO:0070112
* Populated new object GO:0070113 (macro)
  * Changed name of GO:0070113 from "<new term>" to "organellar chromatophore inner membrane"
  * Set definition of GO:0070113 to "The inner, i.e. lumen-facing, of the two lipid bilayers surrounding an organellar chromatophore."
  * Added definition dbxref GOC:mah to GO:0070113
  * Added synonym "Paulinella-type chromatophore inner membrane" to GO:0070113
  * Added general dbxref GOC:mah to synonym Paulinella-type chromatophore inner membrane of GO:0070113
  * Changed synonym scope of GO:0070113 from "Related" to "Exact"
  * Copied GO:0070113 to GO:0070112 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070113
* Populated new object GO:0070114 (macro)
  * Changed name of GO:0070114 from "<new term>" to "organellar chromatophore outer membrane"
  * Set definition of GO:0070114 to "The outer, i.e. cytoplasm-facing, of the two lipid bilayers surrounding an organellar chromatophore."
  * Added definition dbxref GOC:mah to GO:0070114
  * Added synonym "Paulinella-type chromatophore outer membrane" to GO:0070114
  * Added general dbxref GOC:mah to synonym Paulinella-type chromatophore outer membrane of GO:0070114
  * Changed synonym scope of GO:0070114 from "Related" to "Exact"
  * Copied GO:0070114 to GO:0043661 with type OBO_REL:is_a
  * Copied GO:0070114 to GO:0070112 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070114
* Populated new object GO:0070115 (macro)
  * Changed name of GO:0070115 from "<new term>" to "organellar chromatophore intermembrane space"
  * Set definition of GO:0070115 to "The region between the inner and outer lipid bilayers that surround an organellar chromatophore."
  * Added definition dbxref GOC:mah to GO:0070115
  * Added GO:0070115 to category gosubset_prok
  * Added synonym "Paulinella-type chromatophore intermembrane space" to GO:0070115
  * Added general dbxref GOC:mah to synonym Paulinella-type chromatophore intermembrane space of GO:0070115
  * Changed synonym scope of GO:0070115 from "Related" to "Exact"
  * Copied GO:0070115 to GO:0044433 with type OBO_REL:is_a
  * Copied GO:0070115 to GO:0070111 with type part_of
  * Assigned namespace "cellular_component" to GO:0070115
* Populated new object GO:0070116 (macro)
  * Changed name of GO:0070116 from "<new term>" to "organellar chromatophore thylakoid"
  * Set definition of GO:0070116 to "A thylakoid located in an organellar chromatophore."
  * Added definition dbxref GOC:mah to GO:0070116
  * Added GO:0070116 to category gosubset_prok
  * Added synonym "Paulinella-type chromatophore thylakoid" to GO:0070116
  * Added general dbxref GOC:mah to synonym Paulinella-type chromatophore thylakoid of GO:0070116
  * Changed synonym scope of GO:0070116 from "Related" to "Exact"
  * Copied GO:0070116 to GO:0009579 with type OBO_REL:is_a
  * Copied GO:0070116 to GO:0044433 with type OBO_REL:is_a
  * Copied GO:0070116 to GO:0070111 with type part_of
  * Assigned namespace "cellular_component" to GO:0070116
* Populated new object GO:0070117 (macro)
  * Changed name of GO:0070117 from "<new term>" to "organellar chromatophore thylakoid lumen"
  * Set definition of GO:0070117 to "The volume enclosed by an organellar chromatophore thylakoid membrane."
  * Added definition dbxref GOC:mah to GO:0070117
  * Added synonym "Paulinella-type chromatophore thylakoid lumen" to GO:0070117
  * Added general dbxref GOC:mah to synonym Paulinella-type chromatophore thylakoid lumen of GO:0070117
  * Changed synonym scope of GO:0070117 from "Related" to "Exact"
  * Copied GO:0070117 to GO:0044433 with type OBO_REL:is_a
  * Copied GO:0070117 to GO:0031977 with type OBO_REL:is_a
  * Copied GO:0070117 to GO:0070116 with type part_of
  * Assigned namespace "cellular_component" to GO:0070117
* Populated new object GO:0070118 (macro)
  * Changed name of GO:0070118 from "<new term>" to "organellar chromatophore thylakoid membrane"
  * Set definition of GO:0070118 to "The lipid bilayer membrane of any thylakoid within an organellar chromatophore."
  * Added definition dbxref GOC:mah to GO:0070118
  * Added synonym "Paulinella-type chromatophore thylakoid membrane" to GO:0070118
  * Added general dbxref GOC:mah to synonym Paulinella-type chromatophore thylakoid membrane of GO:0070118
  * Changed synonym scope of GO:0070118 from "Related" to "Exact"
  * Copied GO:0070118 to GO:0042651 with type OBO_REL:is_a
  * Copied GO:0070118 to GO:0070116 with type part_of
  * Copied GO:0070118 to GO:0044433 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070118
* Populated new object GO:0070119 (macro)
  * Changed name of GO:0070119 from "<new term>" to "ciliary neurotrophic factor binding"
  * Set definition of GO:0070119 to "Interacting selectively with the cytokine ciliary neurotrophic factor."
  * Added definition dbxref GOC:mah to GO:0070119
  * Added synonym "CNTF binding" to GO:0070119
  * Added general dbxref GOC:mah to synonym CNTF binding of GO:0070119
  * Changed synonym scope of GO:0070119 from "Related" to "Exact"
  * Copied GO:0070119 to GO:0019955 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070119
* Populated new object GO:0070120 (macro)
  * Changed name of GO:0070120 from "<new term>" to "ciliary neurotrophic factor-mediated signaling pathway"
  * Set definition of GO:0070120 to "A series of molecular signals generated as a consequence of ciliary neurotrophic factor binding to a cell surface receptor."
  * Added definition dbxref GOC:mah to GO:0070120
  * Added synonym "ciliary neurotrophic factor-mediated signalling pathway" to GO:0070120
  * Added general dbxref GOC:mah to synonym ciliary neurotrophic factor-mediated signalling pathway of GO:0070120
  * Changed synonym scope of GO:0070120 from "Related" to "Exact"
  * Added synonym "CNTF-mediated signaling pathway" to GO:0070120
  * Added general dbxref GOC:rl to synonym CNTF-mediated signaling pathway of GO:0070120
  * Changed synonym scope of GO:0070120 from "Related" to "Exact"
  * Copied GO:0070120 to GO:0019221 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070120
* Populated new object GO:0070121 (macro)
  * Changed name of GO:0070121 from "<new term>" to "Kupffer's vesicle development"
  * Added comment "This term was added by GO_REF:0000021."
  * Set definition of GO:0070121 to "The progression of the Kupffer's vesicle over time from its initial formation until its mature state. The Kupffer's vesicle is a small but distinctive epithelial sac containing fluid, located midventrally posterior to the yolk cell or its extension, and transiently present during most of the segmentation period."
  * Added definition dbxref GOC:dgh to GO:0070121
  * Added synonym "KV development" to GO:0070121
  * Added general dbxref GOC:dgh to synonym KV development of GO:0070121
  * Changed synonym scope of GO:0070121 from "Related" to "Exact"
  * Copied GO:0070121 to GO:0048856 with type OBO_REL:is_a
  * Copied GO:0070121 to GO:0021761 with type part_of
  * Assigned namespace "biological_process" to GO:0070121
* Deleted GO:0002112 --OBO_REL:is_a--> GO:0005125
* Copied GO:0002112 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0002296 --OBO_REL:is_a--> GO:0002360
* Copied GO:0002296 to GO:0002295 with type OBO_REL:is_a
* Deleted GO:0002297 --OBO_REL:is_a--> GO:0002360
* Copied GO:0002297 to GO:0002295 with type OBO_REL:is_a
* Deleted GO:0003774 --OBO_REL:is_a--> GO:0003674
* Copied GO:0003774 to GO:0017111 with type OBO_REL:is_a
* Deleted GO:0005104 --OBO_REL:is_a--> GO:0005125
* Copied GO:0005104 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0005126 --OBO_REL:is_a--> GO:0005125
* Copied GO:0005126 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0005149 --OBO_REL:is_a--> GO:0005125
* Copied GO:0005149 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0005153 --OBO_REL:is_a--> GO:0005125
* Copied GO:0005153 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0005157 --OBO_REL:is_a--> GO:0005125
* Copied GO:0005157 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0005161 --OBO_REL:is_a--> GO:0005125
* Copied GO:0005161 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0005165 --OBO_REL:is_a--> GO:0005125
* Copied GO:0005165 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0005171 --OBO_REL:is_a--> GO:0005125
* Copied GO:0005171 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0005172 --OBO_REL:is_a--> GO:0005125
* Copied GO:0005172 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0005173 --OBO_REL:is_a--> GO:0005125
* Copied GO:0005173 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0007286 --OBO_REL:is_a--> GO:0048468
* Copied GO:0007286 to GO:0007281 with type OBO_REL:is_a
* Deleted GO:0007400 --OBO_REL:is_a--> GO:0001709
* Copied GO:0007400 to GO:0048867 with type OBO_REL:is_a
* Deleted GO:0014016 --OBO_REL:is_a--> GO:0030154
* Copied GO:0014016 to GO:0048863 with type OBO_REL:is_a
* Deleted GO:0014017 --OBO_REL:is_a--> GO:0045165
* Copied GO:0014017 to GO:0048865 with type OBO_REL:is_a
* Deleted GO:0014018 --OBO_REL:is_a--> GO:0001708
* Copied GO:0014018 to GO:0048866 with type OBO_REL:is_a
* Deleted GO:0014019 --OBO_REL:is_a--> GO:0048468
* Copied GO:0014019 to GO:0048864 with type OBO_REL:is_a
* Changed name of GO:0016747 from "transferase activity, transferring groups other than amino-acyl groups" to "transferase activity, transferring acyl groups other than amino-acyl groups"
* Added synonym "transferase activity, transferring groups other than amino-acyl groups" to GO:0016747
* Added general dbxref EC:2.3.1 to synonym transferase activity, transferring groups other than amino-acyl groups of GO:0016747
* Changed synonym scope of GO:0016747 from "Related" to "Exact"
* Copied GO:0021701 to GO:0030182 with type OBO_REL:is_a
* Copied GO:0021702 to GO:0030182 with type OBO_REL:is_a
* Copied GO:0021707 to GO:0030182 with type OBO_REL:is_a
* Copied GO:0021708 to GO:0030182 with type OBO_REL:is_a
* Copied GO:0021709 to GO:0030182 with type OBO_REL:is_a
* Copied GO:0021710 to GO:0030182 with type OBO_REL:is_a
* Copied GO:0021711 to GO:0030182 with type OBO_REL:is_a
* Copied GO:0021712 to GO:0030182 with type OBO_REL:is_a
* Copied GO:0021755 to GO:0030182 with type OBO_REL:is_a
* Copied GO:0021852 to GO:0001764 with type OBO_REL:is_a
* Deleted GO:0021859 --OBO_REL:is_a--> GO:0021895
* Copied GO:0021859 to GO:0030182 with type OBO_REL:is_a
* Deleted GO:0030372 --OBO_REL:is_a--> GO:0005125
* Copied GO:0030372 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0032003 --OBO_REL:is_a--> GO:0005125
* Copied GO:0032003 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0032813 --OBO_REL:is_a--> GO:0005125
* Copied GO:0032813 to GO:0005102 with type OBO_REL:is_a
* Added synonym "adiponectin-mediated signalling pathway" to GO:0033211
* Changed synonym scope of GO:0033211 from "Related" to "Exact"
* Deleted GO:0042461 --OBO_REL:is_a--> GO:0048468
* Copied GO:0042461 to GO:0048666 with type OBO_REL:is_a
* Deleted GO:0042490 --OBO_REL:is_a--> GO:0030154
* Copied GO:0042490 to GO:0030182 with type OBO_REL:is_a
* Deleted GO:0042667 --OBO_REL:is_a--> GO:0001708
* Copied GO:0042667 to GO:0048665 with type OBO_REL:is_a
* Deleted GO:0042668 --OBO_REL:is_a--> GO:0001709
* Copied GO:0042668 to GO:0048664 with type OBO_REL:is_a
* Changed name of GO:0042716 from "chromatophore" to "plasma membrane-derived chromatophore"
* Changed name of GO:0042717 from "chromatophore membrane" to "plasma membrane-derived chromatophore membrane"
* Changed definition of GO:0042717 from "The lipid bilayer associated with a chromatophore; surrounds chromatophores that form complete vesicles." to "The lipid bilayer associated with a plasma membrane-derived chromatophore; surrounds chromatophores that form complete vesicles."
* Deleted GO:0043661 --OBO_REL:is_a--> GO:0044433
* Copied GO:0043661 to GO:0030659 with type OBO_REL:is_a
* Deleted GO:0043703 --OBO_REL:is_a--> GO:0001709
* Copied GO:0043703 to GO:0048664 with type OBO_REL:is_a
* Deleted GO:0043704 --OBO_REL:is_a--> GO:0001708
* Copied GO:0043704 to GO:0048665 with type OBO_REL:is_a
* Deleted GO:0045514 --OBO_REL:is_a--> GO:0005125
* Copied GO:0045514 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0045515 --OBO_REL:is_a--> GO:0005125
* Copied GO:0045515 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0045516 --OBO_REL:is_a--> GO:0005125
* Copied GO:0045516 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0045517 --OBO_REL:is_a--> GO:0005125
* Copied GO:0045517 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0045518 --OBO_REL:is_a--> GO:0005125
* Copied GO:0045518 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0045519 --OBO_REL:is_a--> GO:0005125
* Copied GO:0045519 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0045520 --OBO_REL:is_a--> GO:0005125
* Copied GO:0045520 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0045521 --OBO_REL:is_a--> GO:0005125
* Copied GO:0045521 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0045522 --OBO_REL:is_a--> GO:0005125
* Copied GO:0045522 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0045523 --OBO_REL:is_a--> GO:0005125
* Copied GO:0045523 to GO:0005102 with type OBO_REL:is_a
* Deleted GO:0046530 --OBO_REL:is_a--> GO:0030154
* Copied GO:0046530 to GO:0030182 with type OBO_REL:is_a
* Deleted GO:0046552 --OBO_REL:is_a--> GO:0045165
* Copied GO:0046552 to GO:0048663 with type OBO_REL:is_a
* Deleted general dbxref GOC:tb from synonym oocyte nucleus localization during oocyte axis determination of GO:0051663
* Deleted general dbxref GOC:dph from synonym oocyte nucleus localization during oocyte axis determination of GO:0051663
* Changed synonym scope of GO:0051663 from "Related" to "Exact"
* Deleted GO:0060119 --OBO_REL:is_a--> GO:0048468
* Copied GO:0060119 to GO:0048666 with type OBO_REL:is_a
* Deleted GO:0060120 --OBO_REL:is_a--> GO:0045165
* Copied GO:0060120 to GO:0048663 with type OBO_REL:is_a

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