[Go-diff] GO update 11/25/2008

Tue Nov 25 21:30:47 PST 2008

OBODIFF of gene_ontology_write.obo version 1.326 by 1.329

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0070162
* Populated new object GO:0070162 (macro)
  * Changed name of GO:0070162 from "<new term>" to "adiponectin secretion"
  * Set definition of GO:0070162 to "The regulated release of adiponectin, a protein hormone, by adipose tissue."
  * Added definition dbxref GOC:rl to GO:0070162
  * Copied GO:0070162 to GO:0001553 with type part_of
  * Copied GO:0070162 to GO:0046879 with type OBO_REL:is_a
  * Copied GO:0070162 to GO:0022602 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070162
* Deleted GO:0001953 --OBO_REL:is_a--> GO:0007162
* Added synonym "Rab GAP activity" to GO:0005097
* Added general dbxref GOC:pg to synonym Rab GAP activity of GO:0005097
* Changed synonym scope of GO:0005097 from "Related" to "Exact"
* Added synonym "Ran GAP activity" to GO:0005098
* Added general dbxref GOC:pg to synonym Ran GAP activity of GO:0005098
* Changed synonym scope of GO:0005098 from "Related" to "Exact"
* Added synonym "Ras GAP activity" to GO:0005099
* Added general dbxref GOC:pg to synonym Ras GAP activity of GO:0005099
* Changed synonym scope of GO:0005099 from "Related" to "Exact"
* Added synonym "Rho GAP activity" to GO:0005100
* Added general dbxref GOC:pg to synonym Rho GAP activity of GO:0005100
* Changed synonym scope of GO:0005100 from "Related" to "Exact"
* Added synonym "Sar GAP activity" to GO:0005101
* Added general dbxref GOC:pg to synonym Sar GAP activity of GO:0005101
* Changed synonym scope of GO:0005101 from "Related" to "Exact"
* Deleted GO:0005149 --OBO_REL:is_a--> GO:0005102
* Deleted GO:0005157 --OBO_REL:is_a--> GO:0005102
* Changed definition of GO:0005921 from "A cell-cell junction that is composed of an array of small channels that permit small molecules to pass from one cell to another. At gap junctions, the membranes of two adjacent cells are separated by a uniform narrow gap of about 2?4 nm that is spanned by channel-forming proteins called connexins, which form hexagonal tubes called connexons." to "A cell-cell junction that is composed of an array of small channels that permit small molecules to pass from one cell to another. At gap junctions, the membranes of two adjacent cells are separated by a uniform narrow gap of about 2-4 nm that is spanned by channel-forming proteins called connexins, which form hexagonal tubes called connexons."
* Changed definition of GO:0005926 from "A hemiadherens junction (HAJ) that forms one of a pair of HAJs in opposing cells that are separated by only 30-40nm, with a thin line of extracellular electron-dense material in between; found where muscles attach to epidermal cells directly (in insects)." to "A cell-substrate adherens junction, also known as a hemiadherens junction (HAJ) that forms one of a pair of junctions in opposing cells that are separated by only 30-40nm, with a thin line of extracellular electron-dense material in between; found where muscles attach to epidermal cells directly (in insects)."
* Changed definition of GO:0005927 from "Terminal anchorage site of skeletal muscle cells to tendons; a specialised type of contact between the cell and the extracellular matrix in skeletal muscle." to "A cell-substrate junction found at the terminal anchorage site of skeletal muscle cells to tendons."
* Changed definition of GO:0005928 from "An adherens junction found in the apical region of a cell, such as those found in cuticle-secreting epithelia, which connect the apical membrane to the cuticle." to "A cell-substrate adherens junction found in the apical region of a cell, such as those found in cuticle-secreting epithelia, which connect the apical membrane to the cuticle."
* Added synonym "apical cell-substrate adherens junction" to GO:0005928
* Added general dbxref GOC:mah to synonym apical cell-substrate adherens junction of GO:0005928
* Changed synonym scope of GO:0005928 from "Related" to "Exact"
* Changed name of GO:0005932 from "basal body" to "microtubule basal body"
* Added synonym "cellular glucose metabolic process" to GO:0006006
* Added general dbxref GOC:vw to synonym cellular glucose metabolic process of GO:0006006
* Changed synonym scope of GO:0006006 from "Related" to "Exact"
* Changed name of GO:0007045 from "hemi-adherens junction assembly" to "cell-substrate adherens junction assembly"
* Changed definition of GO:0007045 from "The formation of a hemi-adherens junction. Within proximal sheath cells, actin/myosin bundles are anchored to the plasma membrane at plaque-like structures termed hemi-adherens junctions, which in turn are closely associated with the gonadal basal lamina. It is proposed that hemi-adherens junctions function to anchor the myofilament apparatus within the basal plasma membrane of the sheath cell and to the exterior basal lamina." to "The aggregation, arrangement, and bonding together of a set of components to form a cell-substrate adherens junction."
* Deleted definition dbxref PMID:10419689 from GO:0007045
* Added definition dbxref GOC:mah to GO:0007045
* Added synonym "hemi-adherens junction assembly" to GO:0007045
* Added general dbxref GOC:mah to synonym hemi-adherens junction assembly of GO:0007045
* Deleted GO:0007317 --OBO_REL:is_a--> GO:0051128
* Changed definition of GO:0008021 from "Secretory organelles, some 50 nm in diameter, of presynaptic nerve terminals; accumulate high concentrations of neurotransmitters and secrete these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane." to "A secretory organelle, some 50 nm in diameter, of presynaptic nerve terminals; accumulates in high concentrations of neurotransmitters and is secreted these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane."
* Copied GO:0008021 to GO:0044456 with type OBO_REL:is_a
* Added synonym "ARF GAP activity" to GO:0008060
* Added general dbxref GOC:pg to synonym ARF GAP activity of GO:0008060
* Changed synonym scope of GO:0008060 from "Related" to "Exact"
* Changed definition of GO:0014803 from "The region between the inner and outer lipid bilayers of the longitudinal sarcoplasmic reticulum envelope. The longitudinal sarcoplasmic reticulum lumen is continuous with the lume contained within the terminal cisternae." to "The region between the inner and outer lipid bilayers of the longitudinal sarcoplasmic reticulum envelope. The longitudinal sarcoplasmic reticulum lumen is continuous with the lumen contained within the terminal cisternae."
* Added synonym "Ral GAP activity" to GO:0017123
* Added general dbxref GOC:pg to synonym Ral GAP activity of GO:0017123
* Changed synonym scope of GO:0017123 from "Related" to "Exact"
* Added synonym "nucleoside diphosphate-sugar hydrolase activity" to GO:0019144
* Added general dbxref GOC:vw to synonym nucleoside diphosphate-sugar hydrolase activity of GO:0019144
* Changed synonym scope of GO:0019144 from "Related" to "Broad"
* Deleted GO:0019959 --OBO_REL:is_a--> GO:0019955
* Added synonym "Rac GAP activity" to GO:0030675
* Added general dbxref GOC:pg to synonym Rac GAP activity of GO:0030675
* Changed synonym scope of GO:0030675 from "Related" to "Exact"
* Changed definition of GO:0031968 from "The outer, i.e. cytoplasm-facing, lipid bilayer of an organelle envelope." to "The outer, i.e. cytoplasm-facing in a cellular organelle, lipid bilayer of an organelle envelope."
* Added synonym "apical junction complex assembly" to GO:0043297
* Added general dbxref GOC:mah to synonym apical junction complex assembly of GO:0043297
* Changed synonym scope of GO:0043297 from "Related" to "Exact"
* Deleted GO:0045607 --OBO_REL:is_a--> GO:0051239
* Deleted GO:0046532 --OBO_REL:is_a--> GO:0051239
* Added synonym "Rap GAP activity" to GO:0046582
* Added general dbxref GOC:pg to synonym Rap GAP activity of GO:0046582
* Changed synonym scope of GO:0046582 from "Related" to "Exact"
* Deleted GO:0047631 --OBO_REL:is_a--> GO:0016462
* Copied GO:0047631 to GO:0019144 with type OBO_REL:is_a
* Deleted GO:0048522 --OBO_REL:is_a--> GO:0048523
* Deleted general dbxref GOC:tb from synonym oocyte nucleus localization during oocyte axis determination of GO:0051663
* Deleted general dbxref GOC:dph from synonym oocyte nucleus localization during oocyte axis determination of GO:0051663
* Changed synonym scope of GO:0051663 from "Related" to "Exact"
* Deleted GO:0070128 --part_of--> GO:0006413
* Changed definition of GO:0070161 from "A cell junction that mechanically attaches a cell (and its cytoskeleton) to  neighboring cells or to the extracellular matrix." to "A cell junction that mechanically attaches a cell (and its cytoskeleton) to neighboring cells or to the extracellular matrix."
* Deleted GO:0075307 --OBO_REL:is_a--> GO:0051094
* Deleted GO:0075308 --OBO_REL:is_a--> GO:0051093