[Go-diff] GO update 10/01/2008

Wed Oct 1 21:30:47 PDT 2008

OBODIFF of gene_ontology_write.obo version 1.243 by 1.245

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0070054
* Created object of type obo:TERM with id GO:0070055
* Created object of type obo:TERM with id GO:0070056
* Created object of type obo:TERM with id GO:0070057
* Populated new object GO:0070054 (macro)
  * Changed name of GO:0070054 from "<new term>" to "mRNA splicing, via endonucleolytic cleavage and ligation"
  * Added comment "Note that while typically associated with tRNA splicing, splicing via endonucleolytic cleavages and subsequent ligation of the free exon ends is known to be used for some non-tRNA substrates, e.g. HAC1 (YFL031W) in S. cerevisiae and an intron in the 23S rRNA of the Archaeal species Desulfurococcus mobilis."
  * Set definition of GO:0070054 to "Splicing of mRNA substrates via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons."
  * Added definition dbxref GOC:krc to GO:0070054
  * Added definition dbxref GOC:mah to GO:0070054
  * Added GO:0070054 to category gosubset_prok
  * Copied GO:0070054 to GO:0008033 with type OBO_REL:is_a
  * Copied GO:0070054 to GO:0000394 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070054
* Populated new object GO:0070055 (macro)
  * Changed name of GO:0070055 from "<new term>" to "HAC1-type intron splice site recognition and cleavage"
  * Set definition of GO:0070055 to "The process by which the tertiary structure of a HAC1 type intron is recognized, and the endonucleolytic cleavage of the RNA at both the 5' and 3' splice sites occurs."
  * Added definition dbxref GOC:krc to GO:0070055
  * Added definition dbxref GOC:mah to GO:0070055
  * Added definition dbxref PMID:10357823 to GO:0070055
  * Added GO:0070055 to category gosubset_prok
  * Copied GO:0070055 to GO:0006396 with type OBO_REL:is_a
  * Copied GO:0070055 to GO:0070054 with type part_of
  * Assigned namespace "biological_process" to GO:0070055
* Populated new object GO:0070056 (macro)
  * Changed name of GO:0070056 from "<new term>" to "prospore membrane leading edge"
  * Set definition of GO:0070056 to "The region of the prospore membrane that extends to surround the spore nucleus; coated with specific proteins that are thought to play a role in prospore membrane organization."
  * Added definition dbxref GOC:mah to GO:0070056
  * Added definition dbxref PMID:14702385 to GO:0070056
  * Added synonym "forespore membrane leading edge" to GO:0070056
  * Changed synonym scope of GO:0070056 from "Related" to "Exact"
  * Copied GO:0070056 to GO:0044425 with type OBO_REL:is_a
  * Copied GO:0070056 to GO:0005628 with type part_of
  * Assigned namespace "cellular_component" to GO:0070056
* Populated new object GO:0070057 (macro)
  * Changed name of GO:0070057 from "<new term>" to "prospore membrane spindle pole body attachment site"
  * Set definition of GO:0070057 to "The region of the prospore membrane to which the spindle pole body (SPB) is anchored; the prospore membrane extends from the SPB attachment site to surround the spore nucleus."
  * Added definition dbxref GOC:mah to GO:0070057
  * Added definition dbxref PMID:14702385 to GO:0070057
  * Added synonym "forespore membrane SPB attachment site" to GO:0070057
  * Changed synonym scope of GO:0070057 from "Related" to "Exact"
  * Added synonym "forespore membrane spindle pole body attachment site" to GO:0070057
  * Changed synonym scope of GO:0070057 from "Related" to "Exact"
  * Added synonym "prospore membrane SPB attachment site" to GO:0070057
  * Changed synonym scope of GO:0070057 from "Related" to "Exact"
  * Copied GO:0070057 to GO:0044425 with type OBO_REL:is_a
  * Copied GO:0070057 to GO:0005628 with type part_of
  * Assigned namespace "cellular_component" to GO:0070057
* Changed definition of GO:0000379 from "The process of recognition of the tertiary structure of a tRNA type intron and the endonucleolytic cleavage of the RNA at both the 5' and 3' splice sites." to "The process by which the tertiary structure of a tRNA type intron is recognized, and the endonucleolytic cleavage of the RNA at both the 5' and 3' splice sites occurs."
* Added definition dbxref GOC:mah to GO:0000379
* Deleted GO:0000379 --part_of--> GO:0000394
* Copied GO:0000379 to GO:0006388 with type part_of
* Changed name of GO:0006388 from "tRNA splicing" to "tRNA splicing, via endonucleolytic cleavage and ligation"
* Deleted GO:0007276 --OBO_REL:is_a--> GO:0019953
* Copied GO:0007276 to GO:0019953 with type part_of
* Copied GO:0007276 to GO:0022414 with type OBO_REL:is_a
* Copied GO:0010702 to GO:0051239 with type OBO_REL:is_a
* Copied GO:0010710 to GO:0060255 with type OBO_REL:is_a
* Deleted GO:0010712 --OBO_REL:is_a--> GO:0051246
* Copied GO:0010712 to GO:0060255 with type OBO_REL:is_a
* Copied GO:0010712 to GO:0044246 with type OBO_REL:is_a
* Deleted GO:0010713 --negatively_regulates--> GO:0010712
* Deleted GO:0010713 --OBO_REL:is_a--> GO:0051248
* Copied GO:0010713 to GO:0010712 with type OBO_REL:is_a
* Copied GO:0010713 to GO:0032963 with type negatively_regulates
* Copied GO:0010713 to GO:0044252 with type OBO_REL:is_a
* Copied GO:0010713 to GO:0010605 with type OBO_REL:is_a
* Deleted GO:0010714 --OBO_REL:is_a--> GO:0051247
* Deleted GO:0010714 --positively_regulates--> GO:0010712
* Copied GO:0010714 to GO:0032963 with type positively_regulates
* Copied GO:0010714 to GO:0010712 with type OBO_REL:is_a
* Copied GO:0010714 to GO:0044253 with type OBO_REL:is_a
* Copied GO:0010714 to GO:0010604 with type OBO_REL:is_a
* Deleted GO:0010754 --negatively_regulates--> GO:0009968
* Copied GO:0010754 to GO:0009968 with type OBO_REL:is_a
* Deleted GO:0030574 --OBO_REL:is_a--> GO:0044254
* Copied GO:0030574 to GO:0044243 with type OBO_REL:is_a
* Changed name of GO:0031252 from "leading edge" to "cell leading edge"
* Added synonym "leading edge of cell" to GO:0031252
* Changed synonym scope of GO:0031252 from "Related" to "Exact"
* Deleted GO:0032963 --OBO_REL:is_a--> GO:0019538
* Copied GO:0032963 to GO:0044259 with type OBO_REL:is_a
* Deleted GO:0032967 --OBO_REL:is_a--> GO:0045727
* Copied GO:0032967 to GO:0010557 with type OBO_REL:is_a
* Copied GO:0044259 to GO:0044236 with type OBO_REL:is_a