[Go-diff] GO update 10/10/2008

Fri Oct 10 21:30:47 PDT 2008

OBODIFF of gene_ontology_write.obo version 1.260 by 1.263

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010772
* Created object of type obo:TERM with id GO:0010773
* Created object of type obo:TERM with id GO:0010774
* Created object of type obo:TERM with id GO:0010775
* Created object of type obo:TERM with id GO:0010776
* Created object of type obo:TERM with id GO:0010777
* Created object of type obo:TERM with id GO:0010778
* Created object of type obo:TERM with id GO:0010779
* Created object of type obo:TERM with id GO:0010780
* Created object of type obo:TERM with id GO:0010781
* Populated new object GO:0010772 (macro)
  * Changed name of GO:0010772 from "<new term>" to "meiotic DNA recombinase assembly involved in meiotic recombination"
  * Set definition of GO:0010772 to "The aggregation, arrangement and bonding together of strand exchange proteins (recombinases) to form higher order oligomers on single-stranded DNA resulting in meiotic recombination. Meiotic recombination is the cell cycle process whereby double strand breaks are formed and repaired through a double Holliday junction intermediate."
  * Added definition dbxref GOC:dph to GO:0010772
  * Added definition dbxref GOC:tb to GO:0010772
  * Copied GO:0010772 to GO:0007131 with type part_of
  * Copied GO:0010772 to GO:0000707 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010772
* Populated new object GO:0010773 (macro)
  * Changed name of GO:0010773 from "<new term>" to "meiotic DNA recombinase activity involved in meiotic gene conversion"
  * Set definition of GO:0010773 to "The aggregation, arrangement and bonding together of strand exchange proteins (recombinases) to form higher order oligomers on single-stranded DNA resulting in meiotic gene conversion. Meiotic gene conversion is the cell cycle process whereby genetic information is transferred from one helix to another."
  * Added definition dbxref GOC:dph to GO:0010773
  * Added definition dbxref GOC:tb to GO:0010773
  * Copied GO:0010773 to GO:0000707 with type OBO_REL:is_a
  * Copied GO:0010773 to GO:0006311 with type part_of
  * Assigned namespace "biological_process" to GO:0010773
* Populated new object GO:0010774 (macro)
  * Changed name of GO:0010774 from "<new term>" to "meiotic strand invasion involved in meiotic recombination"
  * Set definition of GO:0010774 to "The cell cycle process whereby double strand breaks are formed and repaired through a double Holliday junction intermediate resulting in meiotic recombination. Meiotic recombination is the cell cycle process whereby double strand breaks are formed and repaired through a double Holliday junction intermediate."
  * Added definition dbxref GOC:dph to GO:0010774
  * Added definition dbxref GOC:tb to GO:0010774
  * Copied GO:0010774 to GO:0007131 with type part_of
  * Copied GO:0010774 to GO:0000708 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010774
* Populated new object GO:0010775 (macro)
  * Changed name of GO:0010775 from "<new term>" to "meiotic strand invasion involved in meiotic gene conversion"
  * Set definition of GO:0010775 to "The cell cycle process whereby double strand breaks are formed and repaired through a double Holliday junction intermediate resulting in meiotic recombination."
  * Added definition dbxref GOC:dph to GO:0010775
  * Added definition dbxref GOC:tb to GO:0010775
  * Copied GO:0010775 to GO:0000708 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010775
* Populated new object GO:0010776 (macro)
  * Changed name of GO:0010776 from "<new term>" to "meiotic mismatch repair involved in meiotic gene conversion"
  * Set definition of GO:0010776 to "A system for the identification and correction of base-base mismatches, small insertion-deletion loops, and regions of heterology that are present in duplex DNA formed with strands from two recombining molecules resulting in meiotic gene conversion. Meiotic gene conversion is the cell cycle process whereby genetic information is transferred from one helix to another."
  * Added definition dbxref GOC:dph to GO:0010776
  * Added definition dbxref GOC:tb to GO:0010776
  * Copied GO:0010776 to GO:0006311 with type part_of
  * Copied GO:0010776 to GO:0000710 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010776
* Populated new object GO:0010777 (macro)
  * Changed name of GO:0010777 from "<new term>" to "meiotic mismatch repair involved in meiotic recombination"
  * Set definition of GO:0010777 to "A system for the identification and correction of base-base mismatches, small insertion-deletion loops, and regions of heterology that are present in duplex DNA formed with strands from two recombining molecules resulting in meiotic recombination. Meiotic recombination is the cell cycle process whereby double strand breaks are formed and repaired through a double Holliday junction intermediate."
  * Added definition dbxref GOC:dph to GO:0010777
  * Added definition dbxref GOC:tb to GO:0010777
  * Copied GO:0010777 to GO:0000710 with type OBO_REL:is_a
  * Copied GO:0010777 to GO:0007131 with type part_of
  * Assigned namespace "biological_process" to GO:0010777
* Populated new object GO:0010778 (macro)
  * Changed name of GO:0010778 from "<new term>" to "meiotic DNA repair synthesis involved in meiotic recombination"
  * Set definition of GO:0010778 to "The synthesis of DNA proceeding from the broken 3' single-strand DNA end that uses the homologous intact duplex as the template resulting in meiotic recombination. Meiotic recombination is the cell cycle process whereby double strand breaks are formed and repaired through a double Holliday junction intermediate."
  * Added definition dbxref GOC:dph to GO:0010778
  * Added definition dbxref GOC:tb to GO:0010778
  * Copied GO:0010778 to GO:0000711 with type OBO_REL:is_a
  * Copied GO:0010778 to GO:0007131 with type part_of
  * Assigned namespace "biological_process" to GO:0010778
* Populated new object GO:0010779 (macro)
  * Changed name of GO:0010779 from "<new term>" to "meiotic DNA repair synthesis involved in meiotic gene conversion"
  * Set definition of GO:0010779 to "The synthesis of DNA proceeding from the broken 3' single-strand DNA end that uses the homologous intact duplex as the template resulting in meiotic gene conversion. Meiotic gene conversion is the cell cycle process whereby genetic information is transferred from one helix to another."
  * Added definition dbxref GOC:dph to GO:0010779
  * Added definition dbxref GOC:tb to GO:0010779
  * Copied GO:0010779 to GO:0000711 with type OBO_REL:is_a
  * Copied GO:0010779 to GO:0006311 with type part_of
  * Assigned namespace "biological_process" to GO:0010779
* Populated new object GO:0010780 (macro)
  * Changed name of GO:0010780 from "<new term>" to "meiotic DNA double-strand break formation involved in meiotic recombination"
  * Set definition of GO:0010780 to "The cell cycle process whereby double-strand breaks are generated at defined hotspots throughout the genome during meiosis I resulting in meiotic recombination. Meiotic recombination is the cell cycle process whereby double strand breaks are formed and repaired through a double Holliday junction intermediate."
  * Added definition dbxref GOC:dph to GO:0010780
  * Added definition dbxref GOC:tb to GO:0010780
  * Copied GO:0010780 to GO:0042138 with type OBO_REL:is_a
  * Copied GO:0010780 to GO:0007131 with type part_of
  * Assigned namespace "biological_process" to GO:0010780
* Populated new object GO:0010781 (macro)
  * Changed name of GO:0010781 from "<new term>" to "meiotic DNA double-strand break formation involved in meiotic gene conversion"
  * Set definition of GO:0010781 to "The cell cycle process whereby double-strand breaks are generated at defined hotspots throughout the genome during meiosis I resulting in meiotic gene conversion. Meiotic gene conversion is the cell cycle process whereby genetic information is transferred from one helix to another."
  * Added definition dbxref GOC:dph to GO:0010781
  * Added definition dbxref GOC:tb to GO:0010781
  * Copied GO:0010781 to GO:0006311 with type part_of
  * Copied GO:0010781 to GO:0042138 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010781
* Deleted GO:0000707 --part_of--> GO:0007131
* Deleted GO:0000707 --part_of--> GO:0006311
* Copied GO:0000707 to GO:0007127 with type part_of
* Deleted GO:0000708 --part_of--> GO:0007131
* Deleted GO:0000708 --part_of--> GO:0006311
* Copied GO:0000708 to GO:0007127 with type part_of
* Deleted GO:0000710 --part_of--> GO:0006311
* Deleted GO:0000710 --part_of--> GO:0007131
* Copied GO:0000710 to GO:0007127 with type part_of
* Deleted GO:0000711 --part_of--> GO:0007131
* Deleted GO:0000711 --part_of--> GO:0006311
* Copied GO:0000711 to GO:0007127 with type part_of
* Deleted GO:0000712 --part_of--> GO:0045143
* Deleted GO:0033115 --OBO_REL:is_a--> GO:0009843
* Deleted GO:0033115 --part_of--> GO:0055035
* Copied GO:0033115 to GO:0055035 with type OBO_REL:is_a
* Deleted GO:0042138 --part_of--> GO:0007131
* Deleted GO:0042138 --part_of--> GO:0006311
* Copied GO:0042138 to GO:0007127 with type part_of
* Changed definition of GO:0048029 from "Interacting selectively with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H?[CHOH]n?C(=O)[CHOH]m?H with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides." to "Interacting selectively with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides."
* Deleted GO:0075066 --part_of--> GO:0075065