[Go-diff] GO update 10/17/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Fri Oct 17 21:30:46 PDT 2008 

OBODIFF of gene_ontology_write.obo version 1.279 by 1.281

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010791
* Created object of type obo:TERM with id GO:0010792
* Created object of type obo:TERM with id GO:0070076
* Created object of type obo:TERM with id GO:0070077
* Created object of type obo:TERM with id GO:0070078
* Created object of type obo:TERM with id GO:0070079
* Created object of type obo:TERM with id GO:0070080
* Created object of type obo:TERM with id GO:0070081
* Created object of type obo:TERM with id GO:0070082
* Created object of type obo:TERM with id GO:0070083
* Created object of type obo:TERM with id GO:0070084
* Populated new object GO:0010791 (macro)
  * Changed name of GO:0010791 from "<new term>" to "DNA double-strand break processing involved in repair via synthesis-dependent strand annealing"
  * Set definition of GO:0010791 to "The 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang that results in the repair of a double strand break via synthesis-dependent strand annealing."
  * Added definition dbxref GOC:dph to GO:0010791
  * Added definition dbxref GOC:tb to GO:0010791
  * Copied GO:0010791 to GO:0045003 with type part_of
  * Copied GO:0010791 to GO:0000729 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010791
* Populated new object GO:0010792 (macro)
  * Changed name of GO:0010792 from "<new term>" to "DNA double-strand break processing involved in repair via single-strand annealing"
  * Set definition of GO:0010792 to "The 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang that results in the repair of a double strand break via single-strand annealing."
  * Added definition dbxref GOC:dph to GO:0010792
  * Added definition dbxref GOC:tb to GO:0010792
  * Copied GO:0010792 to GO:0045002 with type part_of
  * Copied GO:0010792 to GO:0000729 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010792
* Populated new object GO:0070076 (macro)
  * Changed name of GO:0070076 from "<new term>" to "histone lysine demethylation"
  * Set definition of GO:0070076 to "The modification of a histone by the removal of a methyl group from a lysine residue."
  * Added definition dbxref GOC:mah to GO:0070076
  * Added synonym "H3K4 demethylation (me1 me2 and me3)" to GO:0070076
  * Copied GO:0070076 to GO:0016577 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070076
* Populated new object GO:0070077 (macro)
  * Changed name of GO:0070077 from "<new term>" to "histone arginine demethylation"
  * Set definition of GO:0070077 to "The modification of a histone by the removal of a methyl group from an arginine residue."
  * Added definition dbxref GOC:mah to GO:0070077
  * Added synonym "H3K4 demethylation (me1 me2 and me3)" to GO:0070077
  * Copied GO:0070077 to GO:0016577 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070077
* Populated new object GO:0070078 (macro)
  * Changed name of GO:0070078 from "<new term>" to "histone H3-R2 demethylation"
  * Set definition of GO:0070078 to "The modification of histone H3 by the removal of a methyl group from arginine at position 2 of the histone."
  * Added definition dbxref GOC:vk to GO:0070078
  * Added synonym "H3K4 demethylation (me1 me2 and me3)" to GO:0070078
  * Copied GO:0070078 to GO:0070077 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070078
* Populated new object GO:0070079 (macro)
  * Changed name of GO:0070079 from "<new term>" to "histone H3-R3 demethylation"
  * Set definition of GO:0070079 to "The modification of histone H3 by the removal of a methyl group from arginine at position 3 of the histone."
  * Added definition dbxref GOC:vk to GO:0070079
  * Added synonym "H3K4 demethylation (me1 me2 and me3)" to GO:0070079
  * Copied GO:0070079 to GO:0070077 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070079
* Populated new object GO:0070080 (macro)
  * Changed name of GO:0070080 from "<new term>" to "titin Z domain binding"
  * Set definition of GO:0070080 to "Interacting selectively with the titin Z domain, which recognises and binds to the C-terminal calmodulin-like domain of alpha-actinin-2 (Act-EF34), adopts a helical structure, and binds in a groove formed by the two planes between the helix pairs of Act-EF34."
  * Added definition dbxref GOC:mah to GO:0070080
  * Added definition dbxref InterPro:IPR015129 to GO:0070080
  * Added synonym "Z repeat domain binding" to GO:0070080
  * Changed synonym scope of GO:0070080 from "Related" to "Exact"
  * Copied GO:0070080 to GO:0019904 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070080
* Populated new object GO:0070081 (macro)
  * Changed name of GO:0070081 from "<new term>" to "clathrin sculpted monoamine transport vesicle"
  * Set definition of GO:0070081 to "A clathrin sculpted lipid bilayer membrane-enclosed vesicle after clathrin release and containing monoamines."
  * Added definition dbxref GOC:mg2 to GO:0070081
  * Copied GO:0070081 to GO:0060198 with type OBO_REL:is_a
  * Copied GO:0070081 to GO:0030133 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070081
* Populated new object GO:0070082 (macro)
  * Changed name of GO:0070082 from "<new term>" to "clathrin sculpted monoamine transport vesicle lumen"
  * Set definition of GO:0070082 to "The volume enclosed by the membrane of the clathrin sculpted monoamine transport vesicle."
  * Added definition dbxref GOC:mg2 to GO:0070082
  * Copied GO:0070082 to GO:0070081 with type part_of
  * Copied GO:0070082 to GO:0060205 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070082
* Populated new object GO:0070083 (macro)
  * Changed name of GO:0070083 from "<new term>" to "clathrin sculpted monoamine transport vesicle membrane"
  * Set definition of GO:0070083 to "The lipid bilayer surrounding a clathrin sculpted monoamine transport vesicle."
  * Added definition dbxref GOC:mg2 to GO:0070083
  * Copied GO:0070083 to GO:0030658 with type OBO_REL:is_a
  * Copied GO:0070083 to GO:0030665 with type OBO_REL:is_a
  * Copied GO:0070083 to GO:0070081 with type part_of
  * Assigned namespace "cellular_component" to GO:0070083
* Populated new object GO:0070084 (macro)
  * Changed name of GO:0070084 from "<new term>" to "protein initiator methionine removal"
  * Set definition of GO:0070084 to "The post-translational protein modification process by which the translation-initiating methionine or formylmethionine residue is removed from a protein."
  * Added definition dbxref GOC:imk to GO:0070084
  * Added definition dbxref GOC:mah to GO:0070084
  * Added synonym "removal of initiator methionine from protein" to GO:0070084
  * Changed synonym scope of GO:0070084 from "Related" to "Exact"
  * Copied GO:0070084 to GO:0043687 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070084
* Deleted GO:0000729 --part_of--> GO:0045003
* Deleted GO:0000729 --part_of--> GO:0045002
* Copied GO:0000729 to GO:0006302 with type part_of
* Added synonym "transglycosidase activity" to GO:0016757
* Changed synonym scope of GO:0016757 from "Related" to "Exact"
* Added synonym "glycosidase activity" to GO:0016798
* Changed synonym scope of GO:0016798 from "Related" to "Exact"
* Deleted GO:0033169 --OBO_REL:is_a--> GO:0016577
* Copied GO:0033169 to GO:0070076 with type OBO_REL:is_a
* Deleted GO:0034720 --OBO_REL:is_a--> GO:0016577
* Copied GO:0034720 to GO:0070076 with type OBO_REL:is_a
* Deleted GO:0034721 --OBO_REL:is_a--> GO:0016577
* Copied GO:0034721 to GO:0070076 with type OBO_REL:is_a
* Changed definition of GO:0060198 from "A clathrin sculpted lipid bilayer membrane enclosed vesicle after clathrin release." to "A clathrin sculpted lipid bilayer membrane-enclosed vesicle after clathrin release."
* Changed definition of GO:0060199 from "A clathrin sculpted lipid bilayer membrane enclosed vesicle after clathrin release and containing glutamate." to "A clathrin sculpted lipid bilayer membrane-enclosed vesicle after clathrin release and containing glutamate."
* Changed definition of GO:0060200 from "A clathrin sculpted lipid bilayer membrane enclosed vesicle after clathrin release and containing acetylcholine." to "A clathrin sculpted lipid bilayer membrane-enclosed vesicle after clathrin release and containing acetylcholine."

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